Manage Custom Tracks

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Manage Custom Tracks

Genome: Human Assembly: Feb. 2009 (GRCh37/hg19) [hg19]

Name	Description	Type	Doc	Items	Pos
KP6_SEs	User Supplied Track	bed		758	chr19:
FLAM76_SE	User Supplied Track	bed		767	chr17:
MK_UTMC2_SEs	UTMC2_H3K27ac_SEs	bed		619	chr1:
MK_SKMM2_SEs	SKMM2_H3K27ac_SEs	bed		360	chr1:
MK_M1286PE7_SEs	M1286PE7_H3K27ac_SEs	bed		746	chr1:
MK_M1286PE2_SEs	M1286PE2_H3K27ac_SEs	bed		814	chr1:
MK_KAS6_SEs	KAS6_H3K27ac_SEs	bed		751	chr1:
MK_FLAM76_SEs	FLAM76_H3K27ac_SEs	bed		1063	chr1:
KHM11_SE	User Supplied Track	bed		615	chr14:
KAS6_SE	User Supplied Track	bed		455	chr15:
XG2_SE	User Supplied Track	bed		591	chr8:
MM_M1_SE	User Supplied Track	bed		245	chr8:
L363_SE	User Supplied Track	bed		406	chr8:
KMS11_SE	User Supplied Track	bed		903	chr5:
KMS12BM_SE	User Supplied Track	bed		722	chr5:
UTMC2_SE	User Supplied Track	bed		299	chr3:
SKMM2_SE	User Supplied Track	bed		278	chr11:
MC1286PE7_SE	User Supplied Track	bed		588	chr7:
MC1286PE2_SE	User Supplied Track	bed		703	chr5:
KARPAS_620_SE	User Supplied Track	bed		479	chr8:
JIM3_SE	User Supplied Track	bed		299	chr3:
EJM_SE	User Supplied Track	bed		480	chr5:
ANBL6.5XIL6_SE	User Supplied Track	bed		676	chr18:
ANBL6_IL6_SE	User Supplied Track	bed		763	chr15:
H929_SE	User Supplied Track	bed		701	chr8:
AMU_MM1_SE	User Supplied Track	bed		833	chr14:
XG2.H3K27ac.GH1321	HomerTagDir.XG2.H3K27ac.GH1321.sam Total Tags = 3.15e+07, normalized to 1.00e+07	bedGraph		53904097	chr1:
WJL2014.356.MM_M1.H3K27Ac	HomerTagDir.WJL2014.356.MM_M1.H3K27Ac.sam Total Tags = 2.04e+07, normalized to 1.00e+07	bedGraph		30017385	chr1:
WJL2014.353.L363.H3K27Ac	HomerTagDir.WJL2014.353.L363.H3K27Ac.sam Total Tags = 1.88e+07, normalized to 1.00e+07	bedGraph		27365106	chr1:
WJL2014.200.KMS11.H3K27Ac	HomerTagDir.WJL2014.200.KMS11.H3K27Ac.sam Total Tags = 1.60e+07, normalized to 1.00e+07	bedGraph		13646784	chr1:
WJL2014.197.KMS12BM.H3K27Ac	HomerTagDir.WJL2014.197.KMS12BM.H3K27Ac.sam Total Tags = 1.64e+07, normalized to 1.00e+07	bedGraph		11102469	chr1:
UTMC2.H3K27ac.TTAGGC	HomerTagDir.UTMC2.H3K27ac.TTAGGC.sam Total Tags = 9.52e+06, normalized to 1.00e+07	bedGraph		11677347	chr1:
SKMM2.H3K27ac.CGATGT	HomerTagDir.SKMM2.H3K27ac.CGATGT.sam Total Tags = 1.06e+07, normalized to 1.00e+07	bedGraph		16515359	chr1:
MC1286PE7.H3K27ac.GCCAAT	HomerTagDir.MC1286PE7.H3K27ac.GCCAAT.sam Total Tags = 6.38e+06, normalized to 1.00e+07	bedGraph		7729484	chr1:
MC1286PE2.H3K27ac.ACAGTG	HomerTagDir.MC1286PE2.H3K27ac.ACAGTG.sam Total Tags = 6.93e+06, normalized to 1.00e+07	bedGraph		9233302	chr1:
KP6.H3K27ac.GH722	HomerTagDir.KP6.H3K27ac.GH722.sam Total Tags = 3.36e+07, normalized to 1.00e+07	bedGraph		47729455	chr1:
KHM11.H3K27ac.GH725	HomerTagDir.KHM11.H3K27ac.GH725.sam Total Tags = 2.68e+07, normalized to 1.00e+07	bedGraph		38744185	chr1:
KAS6.H3K27ac.TGACCA	HomerTagDir.KAS6.H3K27ac.TGACCA.sam Total Tags = 1.01e+07, normalized to 1.00e+07	bedGraph		13690934	chr1:
KARPAS-620.H3K27ac.GH1319	HomerTagDir.KARPAS-620.H3K27ac.GH1319.sam Total Tags = 2.48e+07, normalized to 1.00e+07	bedGraph		41231023	chr1:
JIM3.H3K27ac.GH1313	HomerTagDir.JIM3.H3K27ac.GH1313.sam Total Tags = 3.41e+07, normalized to 1.00e+07	bedGraph		59574460	chr1:
H929.H3K27ac.GH1307	HomerTagDir.H929.H3K27ac.GH1307.sam Total Tags = 2.99e+07, normalized to 1.00e+07	bedGraph		41895649	chr1:
FLAM76.H3K27ac.ATCACG	HomerTagDir.FLAM76.H3K27ac.ATCACG.sam Total Tags = 1.02e+07, normalized to 1.00e+07	bedGraph		14919127	chr1:
EJM.H3K27ac.GH1310	HomerTagDir.EJM.H3K27ac.GH1310.sam Total Tags = 3.31e+07, normalized to 1.00e+07	bedGraph		50787899	chr1:
ANBL6.5XIL6.H3K27ac.GH728	HomerTagDir.ANBL6.5XIL6.H3K27ac.GH728.sam Total Tags = 3.10e+07, normalized to 1.00e+07	bedGraph		42769989	chr1:
ANBL6-IL6.H3K27ac.GH731	HomerTagDir.ANBL6-IL6.H3K27ac.GH731.sam Total Tags = 3.77e+07, normalized to 1.00e+07	bedGraph		47938661	chr1:
AMU-MM1.H3K27ac.GH1316	HomerTagDir.AMU-MM1.H3K27ac.GH1316.sam Total Tags = 1.53e+07, normalized to 1.00e+07	bedGraph		22670902	chr1:
U266_SE_YIN	User Supplied Track	bed		780	chr7:
RPMI8226_SE_YIN	User Supplied Track	bed		295	chr5:
OPM2_SE_YIN	User Supplied Track	bed		816	chr17:
LP1_SE_YIN	User Supplied Track	bed		510	chr5:
KMS_12_BM_SE_YIN	User Supplied Track	bed		289	chr19:
MOLP8_SE_YIN	User Supplied Track	bed		349	chr1:
MOLP2_SE_YIN	User Supplied Track	bed		514	chr6:
MM.1S_SE_YIN	User Supplied Track	bed		854	chr6:
H929_SE_YIN	User Supplied Track	bed		757	chr20:
EJM_SE_YIN	User Supplied Track	bed		526	chr5:
KMS_12_BM.K27ac.YL	KMS.K27ac_cDNA1551_R1 Total Tags = 1.09e+07, normalized to 1.00e+07	bedGraph		6857200	chr1:
EJM.K27ac.YL	EJM_K27ac_cDNA1736_R1.hg19 Total Tags = 6.95e+06, normalized to 1.00e+07	bedGraph		5696070	chr1:
U266.K27ac.YL	U266.K27ac Total Tags = 1.44e+07, normalized to 1.00e+07	bedGraph		5794006	chr1:
RPMI8226.K27ac.YL	RPMI8226.K27ac Total Tags = 1.36e+07, normalized to 1.00e+07	bedGraph		5203379	chr1:
OPM2.K27ac.YL	OPM2.K27ac Total Tags = 1.12e+07, normalized to 1.00e+07	bedGraph		6178506	chr1:
MOLP8.K27ac.YL	MOLP8.K27ac_cDNA1733_R1 Total Tags = 7.96e+06, normalized to 1.00e+07	bedGraph		6261608	chr1:
MOLP2.K27ac.YL	MOLP2.K27ac_cDNA1739_R1 Total Tags = 5.58e+06, normalized to 1.00e+07	bedGraph		5743330	chr1:
MM1S.K27ac.YL	MM1S.K27ac Total Tags = 1.57e+07, normalized to 1.00e+07	bedGraph		5769906	chr1:
LP1.K27ac.YL	LP1_K27ac_cDNA1880_R1.hg19 Total Tags = 2.81e+07, normalized to 1.00e+07	bedGraph		6703773	chr1:
H929.K27ac.YL	H929.K27ac Total Tags = 1.56e+07, normalized to 1.00e+07	bedGraph		4530547	chr1:
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Managing Custom Tracks

This section provides a brief description of the columns in custom track management table. For more details about managing custom tracks, see the Genome Browser User's Guide.

Name - a hyperlink to the update page where you can edit your track data.
Description - the value of the "description" attribute from the track line, if present. If no description is included in the input file, this field contains the track name.
Type - the track type, determined by the Browser based on the format of the data.
Doc - displays "Y" (Yes) if a description page has been uploaded for the track; otherwise the field is blank.
Items - the number of data items in the custom track file. An item count is not displayed for tracks lacking individual items (e.g. wiggle format data).
Pos - the default chromosomal position defined by the track file in either the browser line "position" attribute or the first data line. Clicking this link opens the Genome Browser or Table Browser at the specified position (note: only the chromosome name is shown in this column). The Pos column remains blank if the track lacks individual items (e.g. wiggle format data) and the browser line "position" attribute hasn't been set.