Manage Custom Tracks

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Manage Custom Tracks

Genome: Human Assembly: Feb. 2009 (GRCh37/hg19) [hg19]

Name	Description	Type	Doc	Items	Pos
MCF7_shGATA3_K27ac	MCF7_shGATA3_K27ac	bedGraph		28722726	chr1:
MCF7_oeJUN_K27ac	MCF7_oeJUN_K27ac	bedGraph		38254279	chr1:
MCF7_both_K27ac	MCF7_both_K27ac	bedGraph		29285159	chr1:
MCF7_ctrl_K27ac	MCF7_ctrl_K27ac	bedGraph		33495753	chr1:
TamR_shJUN_BRG1	TamR_shJUN_BRG1	bedGraph		12530970	chr1:
TamR_shCtrl_BRG1	TamR_shCtrl_BRG1	bedGraph		10395679	chr1:
TamR_shJUN_ARID1B	TamR_shJUN_ARID1B	bedGraph		21917669	chr1:
TamR_shCtrl_ARID1B	TamR_shCtrl_ARID1B	bedGraph		11830682	chr1:
TamR_shJUN_P300	TamR_shJUN_P300	bedGraph		29546462	chr1:
TamR_shCtrl_P300	TamR_shCtrl_P300	bedGraph		21544867	chr1:
TamR_shJun_FOXA1	TamR_shJun_FOXA1	bedGraph		6897343	chr1:
TamR_shCtrl_FOXA1	TamR_shCtrl_FOXA1	bedGraph		27856958	chr1:
MCF7_shGATA3_FOXA1	MCF7_shGATA3_FOXA1	bedGraph		10119673	chr1:
MCF7_shCtrl_FOXA1	MCF7_shCtrl_FOXA1	bedGraph		25176156	chr1:
TamR_shJun_K27ac	TamR_shJun_K27ac	bedGraph		16091599	chr1:
TamR_shJun_ER	TamR_shJun_ER	bedGraph		12838062	chr1:
TamR_shCtrl_K27ac	TamR_shCtrl_K27ac	bedGraph		25262601	chr1:
TamR_shCtrl_ER	TamR_shCtrl_ER	bedGraph		28431537	chr1:
MCF7_shGATA3_ER	MCF7_shGATA3_ER	bedGraph		14633853	chr1:
MCF7_shCtrl_K27ac	MCF7_shCtrl_K27ac	bedGraph		19651452	chr1:
MCF7_shCtrl_ER	MCF7_shCtrl_ER	bedGraph		21900574	chr1:
TamR_Jun	TamR_Jun	bedGraph		14681103	chr1:
TamR_GATA3	TamR_GATA3	bedGraph		29200787	chr1:
MCF7_Jun	MCF7_Jun	bedGraph		17430886	chr1:
MCF7_GATA3	MCF7_GATA3	bedGraph		29864709	chr1:
GATA3_Veh_rep1	GATA3_Veh_rep1	bedGraph		48307465	chr1:
GATA3_E2_rep1	GATA3_E2_rep1	bedGraph		38666554	chr1:
TamR_P300	TamR_P300	bedGraph		22498605	chr1:
MCF7_P300	MCF7_P300	bedGraph		20739088	chr1:
MCF7_K27ac_Full	MCF7_K27ac_Full	bedGraph		30195664	chr1:
MCF7_K4me1_Full	MCF7_K4me1_Full	bedGraph		29957757	chr1:
TamR_K4me1_Full	TamR_K4me1_Full	bedGraph		27640552	chr1:
TamR_K27ac_Full	TamR_K27ac_Full	bedGraph		25379377	chr1:
GROseq_TamR_Veh + strand	TamR_Veh Total Tags = 2.31e+07, normalized to 1.00e+07 + strand	bedGraph		10523630	chr1:
GROseq_TamR_Veh - strand	TamR_Veh Total Tags = 2.31e+07, normalized to 1.00e+07 - strand	bedGraph		10126239	chr1:
GROseq_MCF7_Veh + strand	MCF7_Veh Total Tags = 1.53e+07, normalized to 1.00e+07 + strand	bedGraph		7224656	chr1:
GROseq_MCF7_Veh - strand	MCF7_Veh Total Tags = 1.53e+07, normalized to 1.00e+07 - strand	bedGraph		6926203	chr1:
GROseq_TamR_Tam + strand	TamR_Tam Total Tags = 1.42e+07, normalized to 1.00e+07 + strand	bedGraph		7532678	chr1:
GROseq_TamR_Tam - strand	TamR_Tam Total Tags = 1.42e+07, normalized to 1.00e+07 - strand	bedGraph		7202869	chr1:
GROseq_MCF7_E2 + strand	MCF7_E2 Total Tags = 1.02e+07, normalized to 1.00e+07 + strand	bedGraph		5656499	chr1:
GROseq_MCF7_E2 - strand	MCF7_E2 Total Tags = 1.02e+07, normalized to 1.00e+07 - strand	bedGraph		5317304	chr1:
TamR_ER_Full	TamR_ER_Full	bedGraph		34341967	chr1:
MCF7_ER_Full	MCF7_ER_Full	bedGraph		51388271	chr1:
PNAS_TamR_FOXA1	PNAS_TamR_FOXA1	bedGraph		34765688	chr1:
PNAS_MCF7_FOXA1	PNAS_MCF7_FOXA1	bedGraph		41136536	chr1:
Jason_TamR_FOXA1	Jason_TamR_FOXA1	bedGraph		22943985	chr1:
Jason_MCF7_FOXA1	Jason_MCF7_FOXA1	bedGraph		30782052	chr1:
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Managing Custom Tracks

This section provides a brief description of the columns in custom track management table. For more details about managing custom tracks, see the Genome Browser User's Guide.

Name - a hyperlink to the update page where you can edit your track data.
Description - the value of the "description" attribute from the track line, if present. If no description is included in the input file, this field contains the track name.
Type - the track type, determined by the Browser based on the format of the data.
Doc - displays "Y" (Yes) if a description page has been uploaded for the track; otherwise the field is blank.
Items - the number of data items in the custom track file. An item count is not displayed for tracks lacking individual items (e.g. wiggle format data).
Pos - the default chromosomal position defined by the track file in either the browser line "position" attribute or the first data line. Clicking this link opens the Genome Browser or Table Browser at the specified position (note: only the chromosome name is shown in this column). The Pos column remains blank if the track lacks individual items (e.g. wiggle format data) and the browser line "position" attribute hasn't been set.