Manage Custom Tracks
 
Genome: Human    Assembly: Feb. 2009 (GRCh37/hg19)    [hg19]
Name Description Type Doc Items Pos Error
mutex exonsUser Supplied Trackgtf 706chr1:   
mult exon skipUser Supplied Trackgtf 3326chr1:   
intron retUser Supplied Trackgtf 15766chr1:   
exon skipUser Supplied Trackgtf 22514chr1:   
alt 5pUser Supplied Trackgtf 12734chr1:   
alt 3pUser Supplied Trackgtf 10934chr1:   
StringTie TranscriptomeUser Supplied Trackgtf 36386chr1:   
bb huESC_fj074 ih1 rd1 xpe 2m covhuESC_fj074 mapalgo2_pe_nofilt_tophat100100 rnaseq pairedEnd Only mappings coverage minus strand (including one hit for each multihit read) (duplicates removed down to 1)bigWig     Show
bb huESC_fj074 ih1 rd1 xpe 1p covhuESC_fj074 mapalgo2_pe_nofilt_tophat100100 rnaseq pairedEnd Only mappings coverage plus strand (including one hit for each multihit read) (duplicates removed down to 1)bigWig     Show
bb huESC_fj095 ih1 rd1 xpe 2m covhuESC_fj095 mapalgo2_pe_nofilt_tophat100100 rnaseq pairedEnd Only mappings coverage minus strand (including one hit for each multihit read) (duplicates removed down to 1)bigWig     Show
bb huESC_fj095 ih1 rd1 xpe 1p covhuESC_fj095 mapalgo2_pe_nofilt_tophat100100 rnaseq pairedEnd Only mappings coverage plus strand (including one hit for each multihit read) (duplicates removed down to 1)bigWig     Show
bb huESC_fj096 ih1 rd1 xpe 2m covhuESC_fj096 mapalgo2_pe_nofilt_tophat100100 rnaseq pairedEnd Only mappings coverage minus strand (including one hit for each multihit read) (duplicates removed down to 1)bigWig     Show
bb huESC_fj096 ih1 rd1 xpe 1p covhuESC_fj096 mapalgo2_pe_nofilt_tophat100100 rnaseq pairedEnd Only mappings coverage plus strand (including one hit for each multihit read) (duplicates removed down to 1)bigWig     Show
bb hEBw1_fj101 ih1 rd1 xpe 2m covhEBw1_fj101 mapalgo2_pe_nofilt_tophat100100 rnaseq pairedEnd Only mappings coverage minus strand (including one hit for each multihit read) (duplicates removed down to 1)bigWig     Show
bb hEBw1_fj101 ih1 rd1 xpe 1p covhEBw1_fj101 mapalgo2_pe_nofilt_tophat100100 rnaseq pairedEnd Only mappings coverage plus strand (including one hit for each multihit read) (duplicates removed down to 1)bigWig     Show
bb hEBw1_fj102 ih1 rd1 xpe 2m covhEBw1_fj102 mapalgo2_pe_nofilt_tophat100100 rnaseq pairedEnd Only mappings coverage minus strand (including one hit for each multihit read) (duplicates removed down to 1)bigWig     Show
bb hEBw1_fj102 ih1 rd1 xpe 1p covhEBw1_fj102 mapalgo2_pe_nofilt_tophat100100 rnaseq pairedEnd Only mappings coverage plus strand (including one hit for each multihit read) (duplicates removed down to 1)bigWig     Show
bb hEBw2_fj103 ih1 rd1 xpe 2m covhEBw2_fj103 mapalgo2_pe_nofilt_tophat100100 rnaseq pairedEnd Only mappings coverage minus strand (including one hit for each multihit read) (duplicates removed down to 1)bigWig     Show
bb hEBw2_fj103 ih1 rd1 xpe 1p covhEBw2_fj103 mapalgo2_pe_nofilt_tophat100100 rnaseq pairedEnd Only mappings coverage plus strand (including one hit for each multihit read) (duplicates removed down to 1)bigWig     Show
bb hEBw2_fj104 ih1 rd1 xpe 2m covhEBw2_fj104 mapalgo2_pe_nofilt_tophat100100 rnaseq pairedEnd Only mappings coverage minus strand (including one hit for each multihit read) (duplicates removed down to 1)bigWig     Show
bb hEBw2_fj104 ih1 rd1 xpe 1p covhEBw2_fj104 mapalgo2_pe_nofilt_tophat100100 rnaseq pairedEnd Only mappings coverage plus strand (including one hit for each multihit read) (duplicates removed down to 1)bigWig     Show
bb hEBw3_fj105 ih1 rd1 xpe 2m covhEBw3_fj105 mapalgo2_pe_nofilt_tophat100100 rnaseq pairedEnd Only mappings coverage minus strand (including one hit for each multihit read) (duplicates removed down to 1)bigWig     Show
bb hEBw3_fj105 ih1 rd1 xpe 1p covhEBw3_fj105 mapalgo2_pe_nofilt_tophat100100 rnaseq pairedEnd Only mappings coverage plus strand (including one hit for each multihit read) (duplicates removed down to 1)bigWig     Show
bb hEBw3_fj106 ih1 rd1 xpe 2m covhEBw3_fj106 mapalgo2_pe_nofilt_tophat100100 rnaseq pairedEnd Only mappings coverage minus strand (including one hit for each multihit read) (duplicates removed down to 1)bigWig     Show
bb hEBw3_fj106 ih1 rd1 xpe 1p covhEBw3_fj106 mapalgo2_pe_nofilt_tophat100100 rnaseq pairedEnd Only mappings coverage plus strand (including one hit for each multihit read) (duplicates removed down to 1)bigWig     Show
bb hEBw4_fj107 ih1 rd1 xpe 2m covhEBw4_fj107 mapalgo2_pe_nofilt_tophat100100 rnaseq pairedEnd Only mappings coverage minus strand (including one hit for each multihit read) (duplicates removed down to 1)bigWig     Show
bb hEBw4_fj107 ih1 rd1 xpe 1p covhEBw4_fj107 mapalgo2_pe_nofilt_tophat100100 rnaseq pairedEnd Only mappings coverage plus strand (including one hit for each multihit read) (duplicates removed down to 1)bigWig     Show
bb hEBw4_fj108 ih1 rd1 xpe 2m covhEBw4_fj108 mapalgo2_pe_nofilt_tophat100100 rnaseq pairedEnd Only mappings coverage minus strand (including one hit for each multihit read) (duplicates removed down to 1)bigWig     Show
bb hEBw4_fj108 ih1 rd1 xpe 1p covhEBw4_fj108 mapalgo2_pe_nofilt_tophat100100 rnaseq pairedEnd Only mappings coverage plus strand (including one hit for each multihit read) (duplicates removed down to 1)bigWig     Show
bb hEBw5_fj075 ih1 rd1 xpe 2m covhEBw5_fj075 mapalgo2_pe_nofilt_tophat100100 rnaseq pairedEnd Only mappings coverage minus strand (including one hit for each multihit read) (duplicates removed down to 1)bigWig     Show
bb hEBw5_fj075 ih1 rd1 xpe 1p covhEBw5_fj075 mapalgo2_pe_nofilt_tophat100100 rnaseq pairedEnd Only mappings coverage plus strand (including one hit for each multihit read) (duplicates removed down to 1)bigWig     Show
bb hEBw5_fj076 ih1 rd1 xpe 2m covhEBw5_fj076 mapalgo2_pe_nofilt_tophat100100 rnaseq pairedEnd Only mappings coverage minus strand (including one hit for each multihit read) (duplicates removed down to 1)bigWig     Show
bb hEBw5_fj076 ih1 rd1 xpe 1p covhEBw5_fj076 mapalgo2_pe_nofilt_tophat100100 rnaseq pairedEnd Only mappings coverage plus strand (including one hit for each multihit read) (duplicates removed down to 1)bigWig     Show
bb hEBw5_fj077 ih1 rd1 xpe 2m covhEBw5_fj077 mapalgo2_pe_nofilt_tophat100100 rnaseq pairedEnd Only mappings coverage minus strand (including one hit for each multihit read) (duplicates removed down to 1)bigWig     Show
bb hEBw5_fj077 ih1 rd1 xpe 1p covhEBw5_fj077 mapalgo2_pe_nofilt_tophat100100 rnaseq pairedEnd Only mappings coverage plus strand (including one hit for each multihit read) (duplicates removed down to 1)bigWig     Show
bb hEBw5_fj193 ih1 rd1 xpe 2m covhEBw5_fj193 mapalgo2_pe_nofilt_tophat100100 rnaseq pairedEnd Only mappings coverage minus strand (including one hit for each multihit read) (duplicates removed down to 1)bigWig     Show
bb hEBw5_fj193 ih1 rd1 xpe 1p covhEBw5_fj193 mapalgo2_pe_nofilt_tophat100100 rnaseq pairedEnd Only mappings coverage plus strand (including one hit for each multihit read) (duplicates removed down to 1)bigWig     Show
bb hEBw5_fj194 ih1 rd1 xpe 2m covhEBw5_fj194 mapalgo2_pe_nofilt_tophat100100 rnaseq pairedEnd Only mappings coverage minus strand (including one hit for each multihit read) (duplicates removed down to 1)bigWig     Show
bb hEBw5_fj194 ih1 rd1 xpe 1p covhEBw5_fj194 mapalgo2_pe_nofilt_tophat100100 rnaseq pairedEnd Only mappings coverage plus strand (including one hit for each multihit read) (duplicates removed down to 1)bigWig     Show
bb hEBw6_fj109 ih1 rd1 xpe 2m covhEBw6_fj109 mapalgo2_pe_nofilt_tophat100100 rnaseq pairedEnd Only mappings coverage minus strand (including one hit for each multihit read) (duplicates removed down to 1)bigWig     Show
bb hEBw6_fj109 ih1 rd1 xpe 1p covhEBw6_fj109 mapalgo2_pe_nofilt_tophat100100 rnaseq pairedEnd Only mappings coverage plus strand (including one hit for each multihit read) (duplicates removed down to 1)bigWig     Show
bb hEBw6_fj110 ih1 rd1 xpe 2m covhEBw6_fj110 mapalgo2_pe_nofilt_tophat100100 rnaseq pairedEnd Only mappings coverage minus strand (including one hit for each multihit read) (duplicates removed down to 1)bigWig     Show
bb hEBw6_fj110 ih1 rd1 xpe 1p covhEBw6_fj110 mapalgo2_pe_nofilt_tophat100100 rnaseq pairedEnd Only mappings coverage plus strand (including one hit for each multihit read) (duplicates removed down to 1)bigWig     Show
bb hEBw7_fj111 ih1 rd1 xpe 2m covhEBw7_fj111 mapalgo2_pe_nofilt_tophat100100 rnaseq pairedEnd Only mappings coverage minus strand (including one hit for each multihit read) (duplicates removed down to 1)bigWig     Show
bb hEBw7_fj111 ih1 rd1 xpe 1p covhEBw7_fj111 mapalgo2_pe_nofilt_tophat100100 rnaseq pairedEnd Only mappings coverage plus strand (including one hit for each multihit read) (duplicates removed down to 1)bigWig     Show
bb hEBw7_fj112 ih1 rd1 xpe 2m covhEBw7_fj112 mapalgo2_pe_nofilt_tophat100100 rnaseq pairedEnd Only mappings coverage minus strand (including one hit for each multihit read) (duplicates removed down to 1)bigWig     Show
bb hEBw7_fj112 ih1 rd1 xpe 1p covhEBw7_fj112 mapalgo2_pe_nofilt_tophat100100 rnaseq pairedEnd Only mappings coverage plus strand (including one hit for each multihit read) (duplicates removed down to 1)bigWig     Show
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Managing Custom Tracks
 

This section provides a brief description of the columns in custom track management table. For more details about managing custom tracks, see the Genome Browser User's Guide.

  • Name - a hyperlink to the update page where you can edit your track data.
  • Description - the value of the "description" attribute from the track line, if present. If no description is included in the input file, this field contains the track name.
  • Type - the track type, determined by the Browser based on the format of the data.
  • Doc - displays "Y" (Yes) if a description page has been uploaded for the track; otherwise the field is blank.
  • Items - the number of data items in the custom track file. An item count is not displayed for tracks lacking individual items (e.g. wiggle format data).
  • Pos - the default chromosomal position defined by the track file in either the browser line "position" attribute or the first data line. Clicking this link opens the Genome Browser or Table Browser at the specified position (note: only the chromosome name is shown in this column). The Pos column remains blank if the track lacks individual items (e.g. wiggle format data) and the browser line "position" attribute hasn't been set.