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Chromosome position in bases. (Clicks here zoom in 3x)
p14
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Reference Assembly Fix Patch Sequence Alignments
p14
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Reference Assembly Alternate Haplotype Sequence Alignments
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Assembly from Fragments
BAC End Pairs
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BAC End Pairs
BU ORChID
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ORChID Predicted DNA Cleavage Sites from ENCODE/Boston Univ (Tullius lab)
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Chromosome Bands Localized by FISH Mapping Clones
deCODE Recomb
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deCODE Recombination maps, 10Kb bin size, October 2010
ENCODE Pilot
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Clones Placed on Cytogenetic Map Using FISH
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GRC Incident Database
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Genome Reference Consortium Map Contigs
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Contigs New to GRCh37/(hg19), Not Carried Forward from NCBI Build 36(hg18)
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Regions of Exceptionally High Depth of Aligned Short Reads
INSDC
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Accession at INSDC - International Nucleotide Sequence Database Collaboration
liftOver & ReMap
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UCSC LiftOver and NCBI ReMap: Genome alignments to convert annotations to hg38
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Locus Reference Genomic (LRG) / RefSeqGene Sequences Mapped to Feb. 2009 (GRCh37/hg19) Assembly
Map Contigs
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Physical Map Contigs
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Mappability or Uniqueness of Reference Genome from ENCODE
Problematic Regions
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Problematic Regions for NGS or Sanger sequencing or very variable regions
Recomb Rate
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Recombination Rate from deCODE, Marshfield, or Genethon Maps (deCODE default)
RefSeq Acc
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RefSeq Accession
Restr Enzymes
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Restriction Enzymes from REBASE
Short Match
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Perfect Matches to Short Sequence ()
STS Markers
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STS Markers on Genetic (blue) and Radiation Hybrid (black) Maps
updated
GENCODE V47lift37
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GENCODE V47lift37
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NCBI RefSeq
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Genes Archive
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Previous versions of GENCODE/UCSC Genes (knownGene)
UCSC Genes 2013
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GENCODE V45lift37
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GENCODE V45lift37
CCDS
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CRISPR/Cas9 -NGG Targets, whole genome
Ensembl Genes
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Ensembl Genes
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EvoFold Predictions of RNA Secondary Structure
Exoniphy
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Exoniphy Human/Mouse/Rat/Dog
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GENCODE Versions
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Container of all new and previous GENCODE releases
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GENCODE V28lift37
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GENCODE lifted annotations from V28lift37 (Ensembl 92)
GENCODE V31lift37
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GENCODE lifted annotations from V31lift37 (Ensembl 97)
GENCODE V33lift37
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GENCODE lifted annotations from V33lift37 (Ensembl 99)
GENCODE V34lift37
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GENCODE lifted annotations from V34lift37 (Ensembl 100)
GENCODE V35lift37
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GENCODE lifted annotations from V35lift37 (Ensembl 101)
GENCODE V36lift37
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GENCODE lifted annotations from V36lift37 (Ensembl 102)
GENCODE V37lift37
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GENCODE lifted annotations from V37lift37 (Ensembl 103)
GENCODE V38lift37
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GENCODE lifted annotations from V38lift37 (Ensembl 104)
GENCODE V39lift37
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GENCODE lifted annotations from V39lift37 (Ensembl 105)
GENCODE V40lift37
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GENCODE lifted annotations from V40lift37 (Ensembl 106)
GENCODE V41lift37
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GENCODE lifted annotations from V41lift37 (Ensembl 107)
GENCODE V42lift37
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GENCODE lifted annotations from V42lift37 (Ensembl 108)
GENCODE V43lift37
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GENCODE lifted annotations from V43lift37 (Ensembl 109)
GENCODE V44lift37
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GENCODE lifted annotations from V44lift37 (Ensembl 110)
GENCODE V45lift37
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GENCODE lifted annotations from V45lift37 (Ensembl 111)
GENCODE V46lift37
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GENCODE lifted annotations from V46lift37 (Ensembl 112)
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GENCODE V47lift37
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GENCODE lifted annotations from V47lift37 (Ensembl 113)
H-Inv 7.0
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HGNC
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IKMC Genes Mapped
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International Knockout Mouse Consortium Genes Mapped to Human Genome
lincRNAs
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Human Body Map lincRNAs and TUCP Transcripts
lincRNA Transcripts
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lincRNA and TUCP transcripts
lincRNA RNA-Seq Reads
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LRG Transcripts
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Locus Reference Genomic (LRG) / RefSeqGene Fixed Transcript Annotations
MGC/ORFeome Genes
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MGC/ORFeome Full ORF mRNA Clones
ORFeome Clones
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ORFeome Collaboration Gene Clones
MGC Genes
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Mammalian Gene Collection Full ORF mRNAs
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Previous Version of UCSC Genes
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Pfam in UCSC Gene
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Pfam Domains in UCSC Genes
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Gene Prediction Archive
SIB Genes
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Swiss Institute of Bioinformatics Gene Predictions from mRNA and ESTs
SGP Genes
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SGP Gene Predictions Using Mouse/Human Homology
N-SCAN
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N-SCAN Gene Predictions
Genscan Genes
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Geneid Genes
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Geneid Gene Predictions
AUGUSTUS
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AUGUSTUS ab initio gene predictions v3.1
AceView Genes
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AceView Gene Models With Alt-Splicing
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Retroposed Genes V5, Including Pseudogenes
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C/D and H/ACA Box snoRNAs, scaRNAs, and microRNAs from snoRNABase and miRBase
TransMap V5
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TransMap Alignments Version 5
TransMap ESTs
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TransMap EST Mappings Version 5
TransMap RNA
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TransMap GenBank RNA Mappings Version 5
TransMap RefGene
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TransMap RefSeq Gene Mappings Version 5
TransMap Ensembl
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TransMap Ensembl and GENCODE Mappings Version 5
tRNA Genes
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Transfer RNA Genes Identified with tRNAscan-SE
UCSC Alt Events
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Alternative Splicing, Alternative Promoter and Similar Events in UCSC Genes
UniProt
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UniProt SwissProt/TrEMBL Protein Annotations
Vega Genes
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Vega Annotations
Yale Pseudo60
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Yale Pseudogenes based on Ensembl Release 60
OMIM
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Online Mendelian Inheritance in Man
OMIM Cyto Loci
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OMIM Cytogenetic Loci Phenotypes - Gene Unknown
OMIM Genes
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OMIM Gene Phenotypes - Dark Green Can Be Disease-causing
OMIM Alleles
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OMIM Allelic Variant Phenotypes
Publications
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Publications: Sequences in Scientific Articles
AbSplice Scores
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Aberrant Splicing Prediction Scores
CADD 1.6
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CADD 1.6 Score for all single-basepair mutations and selected insertions/deletions
Overlaps
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Revel: Positions with >1 score due to overlapping transcripts (mouseover for details)
CADD 1.6 Ins
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CADD 1.6 Score: Insertions - label is length of insertion
CADD 1.6 Del
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CADD 1.6 Score: Deletions - label is length of deletion
CADD 1.6
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CADD 1.6 Score for all possible single-basepair mutations (zoom in for scores)
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CADD 1.7
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CADD 1.7 Score for all single-basepair mutations and selected insertions/deletions
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CADD 1.7 Ins
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CADD 1.7 Score: Insertions - label is length of insertion
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CADD 1.7 Del
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CADD 1.7 Score: Deletions - label is length of deletion
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CADD 1.7
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CADD 1.7 Score for all possible single-basepair mutations (zoom in for scores)
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ClinGen
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ClinGen curation activities (Dosage Sensitivity and Gene-Disease Validity)
ClinGen CNVs
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Clinical Genome Resource (ClinGen) CNVs
ClinVar Variants
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ClinVar Variants
Constraint scores
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Human constraint scores
MTR All Data
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MTR - Missense Tolerance Ratio Scores all annotations
MTR Scores
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MTR - Missense Tolerance Ratio Scores by base
MetaDome All Data
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MetaDome - Tolerance Landscape score all annotations
MetaDome
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MetaDome - Tolerance Landscape score
HMC
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HMC - Homologous Missense Constraint Score on PFAM domains
JARVIS
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JARVIS: score to prioritize non-coding regions for disease relevance
Coriell CNVs
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Coriell Cell Line Copy Number Variants
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COSMIC
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Catalogue of Somatic Mutations in Cancer V101
COSMIC Regions
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Catalogue of Somatic Mutations in Cancer V82
COVID Data
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Container of SARS-CoV-2 data
COVID Rare Harmful Var
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Rare variants underlying COVID-19 severity and susceptibility from the COVID Human Genetics Effort
COVID GWAS v3
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COVID GWAS v4
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COVID risk variants from GWAS meta-analyses by the COVID-19 Host Genetics Initiative (Rel 4, Oct 2020)
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DECIPHER
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DECIPHER
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DECIPHER Population CNVs
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DECIPHER: Population CNVs
DECIPHER SNVs
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DECIPHER SNVs (not updated anymore - use the hg38 track)
DECIPHER CNVs
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DECIPHER CNVs (not updated anymore - use the hg38 track)
Deleteriousness Predictions
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Variant Deleteriousness / Variant Impact Prediction Scores
BayesDel
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BayesDel - deleteriousness meta-score
Development Delay
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Copy Number Variation Morbidity Map of Developmental Delay
Dosage Sensitivity
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pHaplo and pTriplo dosage sensitivity map from Collins et al 2022
GAD View
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Genetic Association Studies of Complex Diseases and Disorders
GenCC
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GenCC: The Gene Curation Coalition Annotations
Gene Interactions
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Protein Interactions from Curated Databases and Text-Mining
GeneReviews
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GeneReviews
GWAS Catalog
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NHGRI-EBI Catalog of Published Genome-Wide Association Studies
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Haploinsufficiency predictions for genes from DECIPHER
HGMD public
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Human Gene Mutation Database - Public Version Dec 2024
Lens Patents
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Lens PatSeq Patent Document Sequences
LOVD Variants
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LOVD: Leiden Open Variation Database Public Variants
MGI Mouse QTL
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MGI Mouse Quantitative Trait Loci Coarsely Mapped to Human
Orphanet
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Orphadata: Aggregated Data From Orphanet
PanelApp
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Genomics England PanelApp Diagnostics
Polygenic Risk Scores
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Polygenic Risk Scores
PRS eMERGE
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REVEL Scores
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REVEL Pathogenicity Score for single-base coding mutations (zoom for exact score)
RGD Human QTL
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Human Quantitative Trait Locus from RGD
RGD Rat QTL
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Rat Quantitative Trait Locus from RGD Coarsely Mapped to Human
SNPedia
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SNPedia
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SpliceAI
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SpliceAI: Splice Variant Prediction Score
SpliceAI indels (masked)
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SpliceAI Indels (masked)
SpliceAI SNVs (masked)
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SpliceAI SNVs (unmasked)
UniProt Variants
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UniProt/SwissProt Amino Acid Substitutions
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Variants in Papers
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Genetic Variants mentioned in scientific publications
Mastermind Variants
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Genomenon Mastermind Variants extracted from full text publications
Avada Variants
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Avada Variants extracted from full text publications
Web Sequences
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DNA Sequences in Web Pages Indexed by Bing.com / Microsoft Research
CGAP SAGE
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CGAP Long SAGE
Gene Bounds
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Gene Boundaries as Defined by RNA and Spliced EST Clusters
H-Inv
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H-Invitational Genes mRNA Alignments
Human ESTs
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Human ESTs Including Unspliced
Human mRNAs
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Human mRNAs from GenBank
Human RNA Editing
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Human RNA Editing from the DAtabase of RNa EDiting
Other ESTs
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Non-Human ESTs from GenBank
Other mRNAs
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Non-Human mRNAs from GenBank
Poly(A)
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Poly(A) Sites, Both Reported and Predicted
PolyA-Seq
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Poly(A)-sequencing from Merck Research Laboratories
SIB Alt-Splicing
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Alternative Splicing Graph from Swiss Institute of Bioinformatics
Spliced ESTs
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Human ESTs That Have Been Spliced
UniGene
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UniGene Alignments
GTEx Gene V8
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Gene Expression in 54 tissues from GTEx RNA-seq of 17382 samples, 948 donors (V8, Aug 2019)
Allen Brain
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Allen Brain Atlas Probes
Burge RNA-seq
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Burge Lab RNA-seq Aligned by GEM Mapper
CSHL Small RNA-seq
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Small RNA-seq from ENCODE/Cold Spring Harbor Lab
ENC Exon Array
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ENCODE Exon Array
UW Affy Exon
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Affymetrix Exon Array from ENCODE/University of Washington
Duke Affy Exon
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Affymetrix Exon Array from ENCODE/Duke
ENC ProtGeno
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ENCODE Proteogenomics
UNC/BSU ProtGeno
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Proteogenomics Hg19 Mapping from ENCODE/Univ. North Carolina/Boise State Univ.
UNC/BSU ProtGenc
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Proteogenomics Hg19 and GENCODE Mapping from ENCODE/Univ. North Carolina/Boise State Univ.
ENC RNA-seq
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ENCODE RNA-seq
SYDH RNA-seq
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HAIB RNA-seq
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GIS RNA-seq
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RNA-seq from ENCODE/Genome Institute of Singapore
CSHL Long RNA-seq
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Caltech RNA-seq
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RNA-seq from ENCODE/Caltech
EPDnew Promoters
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Promoters from EPDnew human version 006
Affy Archive
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Affymetrix Archive
Affy U133Plus2
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Alignments of Affymetrix Consensus/Exemplars from HG-U133 Plus 2.0
Affy U133
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Alignments of Affymetrix Consensus/Exemplars from HG-U133
Affy U95
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Alignments of Affymetrix Consensus/Exemplars from HG-U95
Affy RNA Loc
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RNA Subcellular Localization by Tiling Microarray from ENCODE Affymetrix/CSHL
Affy GNF1H
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Alignments of Affymetrix Consensus/Exemplars from GNF1H
Affy Exon Array
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Affymetrix Human Exon Array Probes and Probesets
GIS RNA PET
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RNA Sub-cellular Localization by Paired-end diTag Sequencing from ENCODE/GIS
GNF Atlas 2
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GNF Expression Atlas 2
GTEx Gene
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Gene Expression in 53 tissues from GTEx RNA-seq of 8555 samples (570 donors)
GTEx Transcript
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Transcript Expression in 53 tissues from GTEx RNA-seq of 8555 samples/570 donors
GWIPS-viz Riboseq
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Ribosome Profiling from GWIPS-viz
Illumina WG-6
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Alignments of Illumina WG-6 3.0 Probe Set
PeptideAtlas
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Peptide sequences identified from MS spectra of 971 samples by PeptideAtlas
qPCR Primers
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Human (hg19) Whole Transcriptome qPCR Primers
RIKEN CAGE Loc
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RNA Subcellular CAGE Localization from ENCODE/RIKEN
Sestan Brain
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Sestan Lab Human Brain Atlas Microarrays
ENCODE Regulation
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Integrated Regulation from ENCODE
Txn Fac ChIP V2
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Transcription Factor ChIP-seq from ENCODE (V2)
Txn Factor ChIP
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Transcription Factor ChIP-seq Clusters (161 factors) from ENCODE with Factorbook Motifs
Txn Factr ChIP E3
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Transcription Factor ChIP-seq Clusters (338 factors, 130 cell types) from ENCODE 3
DNase Clusters
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DNaseI Hypersensitivity Clusters in 125 cell types from ENCODE (V3)
Layered H3K27Ac
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H3K27Ac Mark (Often Found Near Active Regulatory Elements) on 7 cell lines from ENCODE
Layered H3K4Me3
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H3K4Me3 Mark (Often Found Near Promoters) on 7 cell lines from ENCODE
Layered H3K4Me1
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H3K4Me1 Mark (Often Found Near Regulatory Elements) on 7 cell lines from ENCODE
Transcription
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Transcription Levels Assayed by RNA-seq on 9 Cell Lines from ENCODE
CD34 DnaseI
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Eur. Inst. Oncology/J. C. Venter Inst. Nuclease Accessible Sites
CpG Islands
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CpG Islands (Islands < 300 Bases are Light Green)
Unmasked CpG
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CpG Islands on All Sequence (Islands < 300 Bases are Light Green)
CpG Islands
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CpG Islands (Islands < 300 Bases are Light Green)
ENC Chromatin
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ENCODE Chromatin Interactions
UW 5C Downloads Chromatin Interactions by 5C from ENCODE/University of Washington
UMass 5C
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Chromatin Interactions by 5C from ENCODE/Dekker Univ. Mass.
GIS ChIA-PET
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Chromatin Interaction Analysis Paired-End Tags (ChIA-PET) from ENCODE/GIS-Ruan
ENC DNA Methyl
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ENCODE DNA Methylation
HAIB Methyl450
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CpG Methylation by Methyl 450K Bead Arrays from ENCODE/HAIB
HAIB Methyl RRBS
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DNA Methylation by Reduced Representation Bisulfite Seq from ENCODE/HudsonAlpha
ENC DNase/FAIRE
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ENCODE Open Chromatin by DNaseI HS and FAIRE
UW DNaseI HS
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DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
UW DNaseI DGF
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DNaseI Digital Genomic Footprinting from ENCODE/University of Washington
UNC FAIRE
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Open Chromatin by FAIRE from ENCODE/OpenChrom(UNC Chapel Hill)
Duke DNaseI HS
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Open Chromatin by DNaseI HS from ENCODE/OpenChrom(Duke University)
Open Chrom Synth
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DNaseI/FAIRE/ChIP Synthesis from ENCODE/OpenChrom(Duke/UNC/UTA)
Uniform DNaseI HS
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DNaseI Hypersensitivity Uniform Peaks from ENCODE/Analysis
Master DNaseI HS
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DNaseI Hypersensitive Site Master List (125 cell types) from ENCODE/Analysis
ENC Histone
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ENCODE Histone Modification
UW Histone
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Histone Modifications by ChIP-seq from ENCODE/University of Washington
SYDH Histone
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Histone Modifications by ChIP-seq from ENCODE/Stanford/Yale/USC/Harvard
Broad Histone
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Histone Modifications by ChIP-seq from ENCODE/Broad Institute
Broad ChromHMM
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Chromatin State Segmentation by HMM from ENCODE/Broad
ENC RNA Binding
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ENCODE RNA Binding Proteins
SUNY RIP-seq
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RIP-seq from ENCODE/SUNY Albany
SUNY RIP Tiling
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RNA Binding Protein Associated RNA by Tiling Array from ENCODE/SUNY Albany
SUNY RIP GeneST
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RNA Binding Protein Associated RNA by RIP-chip GeneST from ENCODE/SUNY Albany
ENC TF Binding
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ENCODE Transcription Factor Binding
Uniform TFBS
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Transcription Factor ChIP-seq Uniform Peaks from ENCODE/Analysis
ENCODE 3 TFBS
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Transcription Factor ChIP-seq Peaks (338 factors in 130 cell types) from ENCODE 3
UW CTCF Binding
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CTCF Binding Sites by ChIP-seq from ENCODE/University of Washington
UTA TFBS
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Open Chromatin TFBS by ChIP-seq from ENCODE/Open Chrom(UT Austin)
UChicago TFBS
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Transcription Factor Binding Sites by Epitope-Tag from ENCODE/UChicago
SYDH TFBS
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Transcription Factor Binding Sites by ChIP-seq from ENCODE/Stanford/Yale/USC/Harvard
HAIB TFBS
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Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
FANTOM5
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FANTOM5: Mapped transcription start sites (TSS) and their usage
TSS activity (TPM)
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FANTOM5: TSS activity per sample (TPM)
TSS activity - read counts
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FANTOM5: TSS activity per sample read counts
FANTOM CAT
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FANTOM5: atlas of human long non-coding RNAs with accurate 5' ends
Max counts of CAGE reads
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FANTOM5: Max counts of CAGE reads
Total counts of CAGE reads
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FANTOM5: Total counts of CAGE reads
TSS peaks
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FANTOM5: DPI peak, robust set
Enhancer - promoter correlations distances organ
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FANTOM5: Enhancer - promoter correlations distances organ
Enhancer - promoter correlations distances cell type
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FANTOM5: Enhancer - promoter correlations distances cell type
FANTOM-NET Enhancers
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FANTOM5: FANTOM-NET Enhancers
Enhancers
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FANTOM5: Enhancers
FSU Repli-chip
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Replication Timing by Repli-chip from ENCODE/FSU
GeneHancer
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GeneHancer Regulatory Elements and Gene Interactions
Genome Segments
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Genome Segmentations from ENCODE
GTEx Combined eQTL
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Combined Expression QTLs from 44 Tissues from GTEx (midpoint release, V6)
GTEx Tissue eQTL
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Expression QTLs in 44 tissues from GTEx (midpoint release, V6)
JASPAR Transcription Factors
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JASPAR Transcription Factor Binding Site Database
NKI Nuc Lamina
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NKI Nuclear Lamina Associated Domains (LaminB1 DamID)
NKI LADs (Tig3)
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NKI LADs (Lamina Associated Domains, Tig3 cells)
LaminB1 (Tig3)
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NKI LaminB1 DamID Map (log2-ratio scores, Tig3 cells)
ORegAnno
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Regulatory elements from ORegAnno
Rao 2014 Hi-C
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Hi-C on 7 cell lines from Rao 2014
ReMap ChIP-seq
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ReMap Atlas of Regulatory Regions
Stanf Nucleosome
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Nucleosome Position by MNase-seq from ENCODE/Stanford/BYU
SUNY SwitchGear
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RNA Binding Protein Associated RNA by SwitchGear from ENCODE/SUNY Albany
SwitchGear TSS
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SwitchGear Genomics Transcription Start Sites
TFBS Conserved
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HMR Conserved Transcription Factor Binding Sites
TS miRNA Targets
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TargetScan predicted microRNA target sites
TS miRNA v7.2
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Predicted microRNA Target Sites from TargetScanHuman 7.2 (March 2018)
TS miRNA sites
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TargetScan miRNA Regulatory Sites (Release 5.1, April 2009)
UCSF Brain Methyl
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UCSF Brain DNA Methylation
UMMS Brain Hist
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Brain Histone H3K4me3 ChIP-Seq from Univ. Mass. Medical School (Akbarian/Weng)
UW Repli-seq
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Replication Timing by Repli-seq from ENCODE/University of Washington
VISTA Enhancers
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VISTA Enhancers
Conservation
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Vertebrate Multiz Alignment & Conservation (100 Species)
Cons 46-Way
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Vertebrate Multiz Alignment & Conservation (46 Species)
Cons Indels MmCf
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Indel-based Conservation for Human hg19, Mouse mm8 and Dog canFam2
Evo Cpg
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Weizmann Evolutionary CpG Islands
GERP
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GERP Scores for Mammalian Alignments
phastBias gBGC
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phastBias gBGC predictions
Primate Chain/Net
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Primate Genomes, Chain and Net Alignments
Placental Chain/Net
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Non-primate Placental Mammal Genomes, Chain and Net Alignments
Vertebrate Chain/Net
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Non-placental Vertebrate Genomes, Chain and Net Alignments
CHM13 alignments
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CHM13 (GCA_009914755.4) v1_nfLO liftOver alignments
5% Lowest S
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Selective Sweep Scan (S): 5% Smallest S scores
Cand. Gene Flow
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Candidate Regions for Gene Flow from Neandertal to Non-African Modern Humans
H-C Coding Diffs
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Neandertal Alleles in Human/Chimp Coding Non-synonymous Differences in Human Lineage
Neandertal Methyl
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Neandertal Reconstructed DNA Methylation Map
Neandertal Mito
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Neandertal Mitochondrial Sequence (Vi33.16, 2008)
Neandertal Seq
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Neandertal Sequence Reads
S SNPs
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SNPS Used for Selective Sweep Scan (S)
Sel Swp Scan (S)
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Selective Sweep Scan (S) on Neandertal vs. Human Polymorphisms (Z-Score +- Variance)
Denisova Methyl
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Denisova Reconstructed DNA Methylation Map
Denisova Seq
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Denisova High-Coverage Sequence Reads
Denisova Variants
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Variant Calls from High-Coverage Genome Sequence of an Archaic Denisovan Individual
Mod Hum Variants
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Variant Calls from 11 Modern Human Genome Sequences
Modern Derived
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Modern Human Derived, Denisova Ancestral
dbSNP 155
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Short Genetic Variants from dbSNP release 155
1000G Archive
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1000 Genomes Archive
1000G Ph3 Vars
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1000 Genomes Phase 3 Integrated Variant Calls: SNVs, Indels, SVs
1000G Ph3 Accsbl
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1000 Genomes Project Phase 3 Paired-end Accessible Regions
1000G Ph1 Vars
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1000 Genomes Phase 1 Integrated Variant Calls: SNVs, Indels, SVs
1000G Ph1 Accsbl
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1000 Genomes Project Phase 1 Paired-end Accessible Regions
Array Probesets
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Microarray Probesets
dbSNP Archive
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dbSNP Track Archive
Mult. SNPs(138)
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Simple Nucleotide Polymorphisms (dbSNP 138) That Map to Multiple Genomic Loci
Flagged SNPs(138)
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Simple Nucleotide Polymorphisms (dbSNP 138) Flagged as Clinically Assoc
Common SNPs(138)
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Simple Nucleotide Polymorphisms (dbSNP 138) Found in >= 1% of Samples
All SNPs(138)
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Simple Nucleotide Polymorphisms (dbSNP 138)
Flagged SNPs(141)
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Simple Nucleotide Polymorphisms (dbSNP 141) Flagged by dbSNP as Clinically Assoc
Common SNPs(141)
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Simple Nucleotide Polymorphisms (dbSNP 141) Found in >= 1% of Samples
All SNPs(141)
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Simple Nucleotide Polymorphisms (dbSNP 141)
Mult. SNPs(142)
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Simple Nucleotide Polymorphisms (dbSNP 142) That Map to Multiple Genomic Loci
Flagged SNPs(142)
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Simple Nucleotide Polymorphisms (dbSNP 142) Flagged by dbSNP as Clinically Assoc
Common SNPs(142)
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Simple Nucleotide Polymorphisms (dbSNP 142) Found in >= 1% of Samples
All SNPs(142)
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Simple Nucleotide Polymorphisms (dbSNP 142)
Mult. SNPs(144)
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Simple Nucleotide Polymorphisms (dbSNP 144) That Map to Multiple Genomic Loci
Flagged SNPs(144)
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Simple Nucleotide Polymorphisms (dbSNP 144) Flagged by dbSNP as Clinically Assoc
Common SNPs(144)
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Simple Nucleotide Polymorphisms (dbSNP 144) Found in >= 1% of Samples
All SNPs(144)
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Simple Nucleotide Polymorphisms (dbSNP 144)
Mult. SNPs(146)
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Simple Nucleotide Polymorphisms (dbSNP 146) That Map to Multiple Genomic Loci
Flagged SNPs(146)
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Simple Nucleotide Polymorphisms (dbSNP 146) Flagged by dbSNP as Clinically Assoc
Common SNPs(146)
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Simple Nucleotide Polymorphisms (dbSNP 146) Found in >= 1% of Samples
All SNPs(146)
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Simple Nucleotide Polymorphisms (dbSNP 146)
Mult. SNPs(147)
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Simple Nucleotide Polymorphisms (dbSNP 147) That Map to Multiple Genomic Loci
Flagged SNPs(147)
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Simple Nucleotide Polymorphisms (dbSNP 147) Flagged by dbSNP as Clinically Assoc
Common SNPs(147)
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Simple Nucleotide Polymorphisms (dbSNP 147) Found in >= 1% of Samples
All SNPs(147)
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Simple Nucleotide Polymorphisms (dbSNP 147)
Mult. SNPs(150)
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Simple Nucleotide Polymorphisms (dbSNP 150) That Map to Multiple Genomic Loci
Flagged SNPs(150)
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Simple Nucleotide Polymorphisms (dbSNP 150) Flagged by dbSNP as Clinically Assoc
Common SNPs(150)
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Simple Nucleotide Polymorphisms (dbSNP 150) Found in >= 1% of Samples
All SNPs(150)
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Simple Nucleotide Polymorphisms (dbSNP 150)
Mult. SNPs(151)
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Simple Nucleotide Polymorphisms (dbSNP 151) That Map to Multiple Genomic Loci
Flagged SNPs(151)
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Simple Nucleotide Polymorphisms (dbSNP 151) Flagged by dbSNP as Clinically Assoc
All SNPs(151)
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Simple Nucleotide Polymorphisms (dbSNP 151)
Common SNPs(151)
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Simple Nucleotide Polymorphisms (dbSNP 151) Found in >= 1% of Samples
dbSNP 153
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Short Genetic Variants from dbSNP release 153
dbVar Common Struct Var
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NCBI Curated Common Structural Variants from dbVar
dbVar Conflict SV
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NCBI dbVar Curated Conflict Variants
dbVar Common SV
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NCBI dbVar Curated Common Structural Variants
DGV Struct Var
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Database of Genomic Variants: Structural Variation (CNV, Inversion, In/del)
EVS Variants
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NHLBI GO Exome Sequencing Project (ESP) - Variants from 6,503 Exomes
ExAC
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Exome Aggregation Consortium (ExAC) Variants and Calling Regions
Genome In a Bottle
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Genome In a Bottle Structural Variants and Trios
Genome Variants
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Personal Genome Variants
GIS DNA PET
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ENCODE Genome Institute of Singapore DNA Paired-End Ditags
gnomAD
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Genome Aggregation Database (gnomAD) - Variants, Coverage, and Constraint
gnomAD Structural Variants
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Genome Aggregation Database (gnomAD) - Structural Variants
gnomAD pext
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gnomAD Proportion Expression Across Transcript Scores (pext)
gnomAD Genomes Variants
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Genome Aggregation Database (gnomAD) Genome Variants v2.1.1
gnomAD Exomes Variants
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Genome Aggregation Database (gnomAD) Exome Variants v2.1.1
gnomAD Coverage
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Genome Aggregation Database (gnomAD) - Genome and Exome Sample Coverage
gnomAD Constraint Metrics
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Genome Aggregation Database (gnomAD) - Predicted Constraint Metrics (pLI and Z-scores)
HAIB Genotype
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Genotype (CNV and SNP) by Illumina 1MDuo and CBS from ENCODE/HudsonAlpha
HapMap SNPs
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HapMap SNPs (rel27, merged Phase II + Phase III genotypes)
HGDP Allele Freq
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Human Genome Diversity Project SNP Population Allele Frequencies
Platinum Genomes
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Platinum genome variants
RepeatMasker
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Repeating Elements by RepeatMasker
Interrupted Rpts
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Fragments of Interrupted Repeats Joined by RepeatMasker ID
Microsatellite
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Microsatellites - Di-nucleotide and Tri-nucleotide Repeats
NumtS Sequence
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Human NumtS mitochondrial sequence
Segmental Dups
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Duplications of >1000 Bases of Non-RepeatMasked Sequence
Self Alignment
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Human Chained Self Alignments
Simple Repeats
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Simple Tandem Repeats by TRF
WM + SDust
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Genomic Intervals Masked by WindowMasker + SDust