SGP Genes Track Settings

JavaScript is disabled in your web browser

You must have JavaScript enabled in your web browser to use the Genome Browser

SGP Gene Predictions Using Mouse/Human Homology (All Genes and Gene Predictions tracks)

Display mode: Duplicate track

Color track by codons: Help on codon coloring

Show codon numbering:

Show only transcripts with these accessions:

Display data as a density graph:

Data schema/format description and download

Assembly: Mouse July 2007 (NCBI37/mm9)
Data last updated at UCSC: 2007-10-01

Description

This track shows gene predictions from the SGP2 homology-based gene prediction program developed by Roderic Guigó's "Computational Biology of RNA Processing" group, which is part of the Centre de Regulació Genòmica (CRG) in Barcelona, Catalunya, Spain. To predict genes in a genomic query, SGP2 combines geneid predictions with tblastx comparisons of the genome of the target species against genomic sequences of other species (reference genomes) deemed to be at an appropriate evolutionary distance from the target.

Credits

Thanks to the "Computational Biology of RNA Processing" group for providing these data.