Human methylome studies SRP223612 Track Settings

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Whole Genome Bisulfite sequencing: Allele-specific DNA methylation is increased in cancers and its dense mapping in normal plus neoplastic cells increases the yield of disease-associated regulatory SNPs [Bladder Cell Line, Blood, Bone Marrow, Brain, Breast (Primary Tissue), Breast Cell Line, Cell Line, Liver, Lymph Node, Placenta, Placenta, Maternal]

Track collection: Human methylome studies

All tracks in this collection (425)

Common	Common methbase tracks for the hg38 assembly
DRP001914	Omics catalogue of lung adenocarcinoma cell lines [H1299 Lung Adenocarcinoma Cell Lines; BSseq;, H1437 Lung Adenocarcinoma Cell Lines; BSseq;, H1703 Lung Adenocarcinoma Cell Lines; BSseq;, H2126 Lung Adenocarcinoma Cell Lines; BSseq;, H2228 Lung Adenocarcinoma Cell Lines; BSseq;, H2347 Lung Adenocarcinoma Cell Lines; BSseq;]
DRP003407	Software updates in the Illumina HiSeq platform affect whole-genome bisulfite sequencing [EpiLC, IMR-90, Spermatogonia]
DRP004736	Generation of human oogonia from induced pluripotent stem cells in vitro [Aggregate Cultured PGCLC, PGCLC, iMeLC, iPSC]
DRP006124	DNA methylome analyses and expression analysis for malignant glioma harbouring H3F3A gene mutation [Glioma]
DRP007001	Development of long-read whole genome methylation sequencing method using the enzymatic base conversion and the nanopore sequencing [BT-474, MDA-MB-231]
DRP007963	Whole genome bisulfite sequencing of colorectal cancer [Metastatic Cancerous Tissue Obtained, Primary Cancerous Tissue]
DRP008243	Transcriptome and methylome analyses of trophoblast stem-like cells derived from primed human embryonic stem cells [TSLprimed]
DRP012061	Epigenetic regulation by nitrosative stress as a potential mechanism of long COVID [Small Airway Epithelial Cell]
ERP004221	Genome-wide methylome profiling of normal breast and breast tumors [Breast Cancer, E-MTAB-2014:BT089, E-MTAB-2014:BT126, E-MTAB-2014:BT198, E-MTAB-2014:normal Breast]
ERP005229	Whole-genome Bisulfite Sequencing for Methylation Analysis of human monocytes [M55900]
ERP008742	Germ_cell_methylation_dynamics [056202C0-C771-11E6-Bf9C-68B59976A384, 056B78A0-C771-11E6-Bf9C-68B59976A384, 05727D80-C771-11E6-Bf9C-68B59976A384, 0Ec6Eaf0-5Fb7-11E6-B4F3-68B59976A384, 0Ee5Bd90-5Fb7-11E6-B4F3-68B59976A384, 11____EB2_B_-sc-2176524, 12____EB2_BS_-sc-2176525, 25Ab5C60-5Fb7-11E6-9477-68B599768938, 2Fe8D220-5Fb7-11E6-B4F6-68B59976A384, 2Ff491F0-5Fb7-11E6-B4F7-68B59976A384, 2Ffde0C0-5Fb7-11E6-B4F7-68B59976A384, 3F12Cf30-5Fb7-11E6-9477-68B599768938, 3F2015A0-5Fb7-11E6-9477-68B599768938, 47Ad1C40-5Fb7-11E6-B4F7-68B59976A384, 6Fc872F0-1B75-11E6-B065-68B59976A384, 6Ffc7B40-1B75-11E6-B065-68B59976A384, 83494700-1B75-11E6-B769-68B599768938, 835Db960-1B75-11E6-B769-68B599768938, 9____EB1_BS_-sc-2176522, A3_mPGCLC1-sc-2383193, C3_mPGCLC2-sc-2383195, D2_mPGCLC1-sc-2383188, D3_mPGCLC2-sc-2383196, Df89Bf70-C770-11E6-Bf9C-68B59976A384, Dfc31Ef0-C770-11E6-Bf9C-68B59976A384, Dfca9900-C770-11E6-Bf9C-68B59976A384, E3_mPGCLC2-sc-2383197, F1_hPGCLC1-sc-2383182, F28250B0-C770-11E6-83A1-68B599768938, F2895590-C770-11E6-83A1-68B599768938, F2978660-C770-11E6-83A1-68B599768938, F2_mPGCLC1-sc-2383190, F3_mPGCLC2-sc-2383198, G2_mPGCLC1-sc-2383191, G3_mPGCLC2-sc-2383199, H3_mPGCLC2-sc-2383200, PBAT20150318_S1-sc-2268397, PBAT20150318_S2-sc-2268398, PBAT20150318_S22-sc-2268418, PBAT20150318_S5-sc-2268401, PBAT20150318_S6-sc-2268402, hES1-sc-2351342, hES2-sc-2351343, hES3-sc-2351344, hKSR2-sc-2351346, hKSR3-sc-2351347]
ERP009555	Effects of HIST1H2ac knockdown on the DNA methylation landscape of breast cancer cell line MCF-7 [MCF-7]
ERP010942	We present the first genome-scale analysis of the effect of CpG methylation on DNA-binding of TFs. [Embryonic Cell, Embryonic Cell Deficient In Tet1, Tet2 And Tet3, GP5D Cell, LHSAR Cell, LHSAR Cell With HOXB13 Transduced, LoVo Cell, VCap Cell]
ERP011276	5Aza and TSA treatment of MCF7 cells (BS-seq) [MCF-7]
ERP014223	DNA methylation profiling of human naive embryonic stem cells [Embryonic Stem Cell, Pluripotent Stem Cell]
ERP018009	Base resolution maps of mutations, 5-methylcytosine and 5-hydroxymethylcytosine, and transcriptome of blood, tumour and margin samples from a glioblastoma multiforme patient [Brain]
ERP106410	An integrated genomic analysis of L1 retrotransposon mosaicism in the brain [Hippocampus.NeuN+.WGBS.CTRL-36]
ERP107813	Bisulfite-seq of synovial biopsies from rheumatoid arthritis patients [Synovial Membrane]
ERP109610	Bisulphite-seq to investigate the proto CpG island methylator phenotype of sessile serrated adenoma/polyps [Colon]
ERP109664	Bisulphite-seq to investigate the proto CpG island methylator phenotype of sessile serrated adenoma/polyps, dataset 2 [Colon]
ERP109780	Whole-genome fingerprint of the DNA methylome during chemically induced differentiation of the AML cell line HL-60/S4 [HL60/S4]
ERP110208	Whole genome methylation analysis of sperm and blood from young and old men. [Blood_Old, Blood_Young, Sperm_Old, Sperm_Young]
ERP110315	Single molecule sequencing and assembly of flow sorted Y chromosome from HG02982 [Lymphoblastoid Cell Line]
ERP114912	Genome-wide Analysis of the Nucleosome Landscape in Individuals with Coffin-Siris Syndrome [C001, C002, C003, C004, K001, K004, K012, K017]
ERP117337	Whole genome DNA methylation analysis of sperm DNA from normozoospermic and oligoasthenoteratozoospermic men [P4_NC002_SP_tWGBS_1, P4_NC004_SP_tWGBS_1, P4_NC005_SP_tWGBS_1, P4_NC007_SP_tWGBS_1, P4_NC008_SP_tWGBS_1, P4_OAT001_SP_tWGBS_1, P4_OAT002_SP_tWGBS_1, P4_OAT003_SP_tWGBS_1, P4_OAT005_SP_tWGBS_1, P4_OAT007_SP_tWGBS_1, P4_OAT015_SP_tWGBS_1, P4_OAT017_SP_tWGBS_1, P4_OAT018_SP_tWGBS_1, P4_OAT019_SP_tWGBS_1, P4_OAT020_SP_tWGBS_1, P4_OAT021_SP_tWGBS_1]
ERP122363	No evidence for intervention-associated DNA methylation changes in monocytes of patients with posttraumatic stress disorder or anorexia nervosa [AS-222872-LR-34031, AS-222873-LR-34032, AS-222875-LR-34033, AS-222876-LR-34034, AS-222877-LR-34035, AS-241990-LR-35191, K002000217_85588, K002000217_85589, K002000217_85590, K002000217_85591]
ERP122802	Whole genome DNA methylation analysis of human testicular germ cells [P4_CTR1_TGC_tWGBS_1, P4_CTR2_TGC_tWGBS_1, P4_CTR3_TGC_tWGBS_1, P4_CTR4_TGC_tWGBS_1, P4_CZ1_TGC_tWGBS_1, P4_CZ2_TGC_tWGBS_1, P4_CZ3_TGC_tWGBS_1, P4_CZ4_TGC_tWGBS_1]
ERP123063	Whole genome DNA methylation analysis of human embryonic stem cells [P4_H1_ESC_tWGBS_1, P4_H9_ESC_tWGBS_1]
ERP129475	DNA Methylation signature in mononuclear cells and proinflammatory cytokines in Meniere Disease [Mononuclear]
ERP130693	Performance comparison and in-silico harmonisation of commercial platforms for DNA methylome analysis by targeted bisulfite sequencing [Hela-1, RT112-CP, Ref-gDNA-1000-2]
ERP135121	Whole Genome Bisulfite Sequencing (WGBS) of the SH-SY5Y human neuroblastoma cell line [Bone Marrow]
ERP139499	Whole genome bisulfite sequencing of liver samples of five mammals (human, rhesus macaque, mouse, rat and dog) [Liver]
ERP144942	Validation of differentially methylated DNA regions in colorectal precancerous lesions. [Colon]
SRP000941	UCSD Human Reference Epigenome Mapping Project [Adipose, Adipose Tissue, Adrenal Gland, Aorta, Bladder, Esophagus, Gastric, Generic Sample From, IMR90 Cells, Left Ventricle, Liver, Lung, Ovary, Pancreas, Psoas Muscle, Right Atrium, Right Ventricle, Sigmoid Colon, Small Intestine, Spleen, Thymus]
SRP000996	BI Human Reference Epigenome Mapping Project [Adult CD14, Adult CD3, Adult CD56, CD184+ Endoderm Cultured Cells, CD19, CD34 Primary Cells, Fetal Adrenal, Fetal Heart, Fetal Muscle, Leg, Fetal Muscle, Trunk, Fetal Placenta, Fetal Spinal Cord, Fetal Stomach, Fetal Thymus, Generic Sample From, IMR90 Cells]
SRP001371	University of Washington Human Reference Epigenome Mapping Project [Fetal Intestine, Large, Fetal Intestine, Small]
SRP001720	Dynamic Changes in the Human Methylome During Differentiation [Embryonic Stem Cells, Fibroblasts Derived, Newborn Foreskin Fibroblasts]
SRP003529	Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells
SRP006728	Genome-wide DNA methylation mapping in breast cancer cells (HCC1954) and normal breast cells (HMEC) [Breast Cancer Cells]
SRP006774	Increased methylation variation in epigenetic domains across cancer types [Adenoma Sample 2, Cancer Sample 1, Cancer Sample 2, Cancer Sample 3, Normal Sample 1, Normal Sample 2, Normal Sample 3]
SRP007400	Sperm methylation profiles reveal features of epigenetic inheritance and evolution in primates [Sperm]
SRP007820	The DNA methylomes of a newborn and a centenarian [CD4+T Cells, Mononuclear Cells]
SRP008144	Directional DNA methylation changes and complex intermediate states accompany lineage specificity in the adult hematopoietic compartment [B Cell, CD133HSC, HSPC, Neutrohphil]
SRP008337	Role of DNMT3B in the regulation of early neural and neural crest specifiers [H9 Cells]
SRP011746	Ultra-low-input, tagmentation-based whole genome bisulfite sequencing [GM20847: Gujarati Indian]
SRP011945	Base Resolution Analysis of 5-Hydroxymethylcytosine in the Mammalian Genome [E14Tg2A, H1]
SRP012161	Evolutionary Significance of DNA Methylation in Human and Chimpanzee Brains [Prefrontal Cortex]
SRP012412	GSE59395: Genome-wide map of regulatory interactions in the human genome [A549, Adrenal Gland, Body Of Pancreas, Esophagus Muscularis Mucosa, Esophagus Squamous Epithelium, Fibroblast Of Arm, GM12878, Gastroesophageal Sphincter, HeLa-S3, Heart Left Ventricle, HepG2, Hepatocyte, K562, Lower Leg Skin, Mammary Epithelial Cell, Motor Neuron, OCI-LY7, Ovary, Prostate Gland, Right Lobe Of Liver, SK-N-SH, Smooth Muscle Cell, Spleen, Stomach, Suprapubic Skin, Testis, Thyroid Gland, Tibial Nerve, Transverse Colon, Upper Lobe Of Left Lung]
SRP012499	Epigenetic alterations of a DNMT3B-mutant ICF patient at base-pair resolution [EBV Immortalized B Cells]
SRP012560	GSE34399: Replication Timing by Repli-seq from ENCODE/University of Washington [H1-hESC, Skeletal Muscle Myoblast]
SRP013816	SINE transcription by RNA polymerase III is suppressed by histone methylation but not DNA methylation [HeLa Cervical Carcinoma Cells]
SRP014634	Examination of four human tissue samples by MethylC-seq [Placenta]
SRP014898	Human Sperm Epigenomes and Transcriptomes Reveal Novel Features of Enhancers, Sex Chromosomes, piRNAs, Gametogenesis, and Inherited Small RNAs (Bisulfite-Seq) [Sperm]
SRP015704	Genome-wide mapping of nucleosome positioning and DNA methylation within Individual DNA molecules [Glioblastoma, Lung Fiboblast Cells]
SRP015742	GSE40832: Whole Genome Bisulfite Sequencing by ENCODE/HAIB [Inner Cell Mass, Mesoderm]
SRP019232	Whole genome bisulfite-seq of two healthy males. [Hair Follicle, Peripheral Blood Lymphocyte]
SRP021039	Selective demethylation and altered gene expression are associated with ICF Syndrome in human induced pluripotent stem cells and mesenchymal stem cells [Induced Pluripotent Stem Cell]
SRP021479	Genome-wide DNA methylation aberrations in human atherosclerosis (sequencing) [Carotid Tissue]
SRP021846	Age-related methylation changes are associated with altered transcriptional circuitry [Methyl-seq] [Skin (Epidermal Suction Blister Samples)]
SRP022041	Buccals are likely to be a more informative surrogate tissue than blood for epigenome-wide association studies [Bisulfite-Seq] [Normal Buccal Cells]
SRP022149	Genome-wide parent-of-origin DNA methylation analysis [Methyl-seq] [Normal Brain Tissue, Normal Liver Tissue, Normal Placenta Tissue]
SRP022160	Whole-genome analysis of 5-hydroxymethylcytosines and 5-methylcytosines at base resolution in human brain [Brain Prefrontal Cortex]
SRP022182	Homo sapiens Epigenomics [Generic Sample From]
SRP026048	Global epigenomic reconfiguration during mammalian brain development [Brain (Cerebral Cortex), Brain (Dorsal Prefrontal Cortex), Brain (Frontal Cortex), Brain (Middle Frontal Gyrus), Embryonic Stem Cells]
SRP026604	Genome-wide methylation maps for Proliferating and Senescent cells [IMR-90]
SRP028577	Large-scale hypomethylated blocks associated with Epstein-Barr virus-induced B-cell immortalization [Bisulfite-seq] [Activated B-cells, Activated B-cells_day 16, Activated B-cells_week 3, EBV Transformed B-cells, EBV Transformed B-cells_16 Days Post Infection, EBV Transformed B-cells_3 Weeks Post Infection, Resting B-cells]
SRP028600	Charting a dynamic DNA methylation landscape of the human genome [Colon Primary Tumor, Frontal Cortex Alzheimer, Frontal Cortex Normal, HepG2 Cell Line, IMR90 Immortalized Fibroblast Cell Line]
SRP028804	The DNA methylation landscape of human early embryos [Liver]
SRP029519	Induction of sarcomas by mutant IDH2 [10T Isogenic Cell Line With IDH2 Mutation]
SRP032354	whole-genome bisulfite sequencing (BS-seq) of HEK293 cells (HEK293-CT) and HEK293 cells stably over-expressing the BAHD1 gene (HEK-BAHD1) [Embryonic Semi-Differentiated Kidley Cells, Modified HEK293 Cell Overexpressing BAHD1]
SRP033201	Homo sapiens Genome sequencing [Generic Sample From]
SRP033252	Genome-wide profiling of the functional DNA methylation landscape at base-pair resolution in human cancer types [BS-seq] [Blood (B-cells), Brain, Brain (Grey Matter), Brain (White Matter), Breast, Colon, Liver, Lung, Placenta, Prostate]
SRP033283	The RON receptor tyrosine kinase promotes metastasis by triggering epigenetic reprogramming through the thymine glycosylase MBD4 (Bisulfite-Seq) [Breast Cancer Cell Line]
SRP033491	China_type_2_diebetes_family [Sample From]
SRP033504	Epigenome analysis of human epidermal samples with aging and sun exposure [Dermis]
SRP035642	The relationship between DNA methylation, genetic and expression inter-individual variation in untransformed human fibroblasts [Whole genome bisulfite sequencing] [GM02316, GM02317, GM02456, GM02555]
SRP037971	Genome wide profiling of MBD2 binding [MCF-7 WT]
SRP038103	Genome-wide methylation maps for untreated and Aza treated AML3 cells [AML3]
SRP041025	WGBS data of pediatric B-cell acute leukemias [Bone Marrow / Peripheral Blood]
SRP041718	Genome-wide DNA hypomethylation and RNA:DNA hybrid accumulation in Aicardi-Goutières syndrome [Primary Fibroblast]
SRP041720	Genome-wide profiling of the DNA methylation landscape at base-pair resolution in human neurological disorders (Bisulfite-Seq) [Brain Grey Matter]
SRP041822	Methylation QTLs are associated with coordinated changes in transcription factor binding, histone modifications, and gene expression levels [Bisulfite-Seq] [Lymphoblastoid Cell Line]
SRP041828	Comparison of nucleosome occupancy and chromatin states between normal and cancer cell lines [HMEC, MCF7, PC3, PrEC]
SRP041984	Epigenetic and transcriptional aberrations in human pluripotent stem cells reflect differences in reprogramming mechanisms [Fibroblast, Pluripotent]
SRP043461	The effects of the global loss of DNA methylation on the functional cancer epigenome (Bisulfite-seq) [DKO1, HCT116]
SRP045269	Global loss of DNA methylation uncovers intronic enhancers in genes [Colorectal Cancer Cell Line]
SRP045902	Resetting Transcription Factor Control Circuitry Towards Ground State Pluripotency In Human [H9]
SRP047086	A public-private-academic consortium, Genome-in-a-Bottle (GIAB), hosted by NIST to develop reference materials and standards for clinical sequencing [B-Lymphocyte]
SRP048761	Dissecting neural differentiation regulatory networks through epigenetic footprinting [ES-derived Neural Progenitor Cells]
SRP048844	Genome-wide profiling of DNA methylation at single-base resolution based on MeDIP-bisulfite high-throughput sequencing and ridge regression (MethyC + MeDIP) [Ovarian Epithelial]
SRP048896	Genome-wide profiling of the DNA methylation landscape at base-pair resolution in human acute myeloid leukemia cell lines. [AML]
SRP049651	Large-scale epigenetic reprogramming is punctuated late during the evolution of pancreatic cancer progression [BS-Seq] [Liver Metastasis, Lung Metastasis, Normal Pancreas, Patient A38, Peritoneal Metastasis, Primary Tumor]
SRP049710	Loss of 5-hydroxymethylcytosine is linked to gene body hypermethylation in kidney cancer [Matched Normal, Tumor]
SRP049782	Targeted disruption of DNMT1, 3A and 3B in human embryonic stem cells [WGBS] [ES]
SRP049936	DNA methylation in mammalian placentas [Cerebrum, Cordblood, Extraembryonic Membrane, Placenta, Trophoblasts]
SRP049985	Whole Genome Bisulfite Sequencing (WGBS) of cKIT+ sorted cells from 57-137 day old fetal testes and ovaries. [cKIT+ FACS Sort]
SRP050499	The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ Cells [Brain, Gonadal Somatic Cells, Heart, Primordial Germ Cells]
SRP051366	Bacterial Infection Remodels the DNA Methylation Landscape of Human Dendritic Cells (Bisulfite-Seq) [Monocyte-derived Dendritic Cells]
SRP051367	Bacterial Infection Remodels the DNA Methylation Landscape of Human Dendritic Cells (TAB-Seq) [Monocyte-derived Dendritic Cells]
SRP052842	Pleiotropic Analysis of Lung Cancer and Blood Triglycerides [Purified AT2 Cells]
SRP055494	BLUEPRINT methylome of the HapMap cell line GM18507 (Coriell cell line NA18507) [Modified B Cell (Lymphoblastoid)]
SRP056911	DNA methylation in the placentas of typically developing and autistic children [Placenta]
SRP057098	A Unique Gene Regulatory Network Resets the Human Germline Epigenome for Development [Gonad]
SRP057450	A novel bivalent chromatin state exists at enhancers [HCT116]
SRP058102	Analysis of DNA Methylation in replication and cell cycle arrest. [Primary Dermal Fibroblasts]
SRP059289	Conversion of Human Gastric Epithelial Cells to Multipotent Endodermal Progenitors using Defined Small Molecules [DNA methylation] [Gastric Epthelial Cells Isolated, Hepatoctes Induced By Differentiation Of hiMEPs, hiMEPs Derived]
SRP059313	UPF : Methylation_primates [Blood]
SRP059433	Gender Differences in Global but not Targeted Demethylation in iPSC Reprogramming [BS Seq AIDKO MEF1, BS Seq D21 iPSC Clone3, BS Seq D29 AIDKO iPSC Clone1, BS Seq D29 AIDKO iPSC Clone2, BS Seq D29 MALE iPSC Clone1, BS Seq D29 MALE iPSC Clone2, BS Seq D29 MALE iPSC Clone3, BS Seq D29 iPSC Clone3, BS Seq D6 SSEA1 Positive 1, BS Seq D6 SSEA1 Positive 2, BS Seq D6 SSEA1 Positive 3, BS Seq D6 Thy1 Positive 1, BS Seq D6 Thy1 Positive 2, BS Seq D6 Thy1 Positive 3, BS Seq D60 AIDKO iPSC Clone1, BS Seq D60 MALE iPSC Clone1, BS Seq D60 MALE iPSC Clone2, BS Seq D60 MALE iPSC Clone3, BS Seq D60 iPSC Clone2, BS Seq D60 iPSC Clone3, BS Seq ESC 1, BS Seq ESC 2, BS Seq ESC 3, BS Seq MALE MEF 1, BS Seq MALE MEF 2, BS Seq MALE MEF 3, BS Seq MEF 1, BS Seq MEF 2, BS Seq MEF 3, BS Seq P29 iPSC Clone1, Fibroblast, Reprogramming Fibroblast]
SRP059772	Whole genome analysis of the methylome and hydroxymethylome in normal and malignant lung and liver [oxBS-Seq and BS-Seq] [Liver, Lung]
SRP065930	HX1 [Blood]
SRP067779	Novel contribution of acetylated histone variant H2A.Z in activation of neo-enhancers in prostate cancer [NOMe-seq]
SRP068579	Reversion to naïve human pluripotency creates a new methylation landscape devoid of blastocyst or germline memory [5iLAF SSEA4 Negative UCLA1 EpiLC Day 0, 5iLAF SSEA4 Negative UCLA1 EpiLC Day 16, 5iLAF SSEA4+ Subpopulation UCLA1 hESCs, 5iLAF SSEA4- Subpopulation UCLA1 hESCs, 5iLAF SSEA4- Subpopulation UCLA20n hESCs, Primed SSEA4+ UCLA1 hESCs, Primed UCLA1 EpiLC Day 0, Primed UCLA1 EpiLC Day 16]
SRP071771	Identification of methylation haplotype blocks aids in deconvolution of heterogeneous tissue samples and tissue-of-origin mapping from plasma DNA [WGBS] [Liver, Skeletal Muscle]
SRP071891	Functional Haploid Human Oocytes Generated from Polar Body Genomes (Bisulfite-Seq) [IVF Derived Embryonic Stem Cell, Polar Body Nuclear Transfer]
SRP072071	study of brain methylation [Brain, Pre-Frontal Cortex]
SRP072075	Epigenomic analysis of lymphocytes and fibroblasts [Foreskin Fibroblasts, Sorted CD4+ T Cells]
SRP072078	epigenomic analysis of lung and liver [Liver, Lung]
SRP072141	stem cell epigenomics [H1 Stem Cells]
SRP074177	Nucleation of DNA Repair Factors by FOXA1 Links DNA Demethylation to Transcriptional Pioneering [MCF-7 Cells (siFOXA1- Transfected), MCF-7 Cells (siNS- Transfected)]
SRP074598	Single Cell DNA Methylome Sequencing of Human Preimplantation Embryos [Heart, ICM, Sperm, TE, Villus]
SRP074852	DNMT and HDAC inhibitors globally induce cryptic TSSs encoded in long terminal repeats [NCI-H1299-EGFP/NEO]
SRP075292	Cumulative Impact of Polychlorinated Biphenyl and Large Chromosomal Duplications on DNA Methylation, Chromatin, and Expression of Autism Candidate Genes. [Brain, Neuroblastoma Cell Line]
SRP075562	ZBTB33 (Kaiso) Differentially Regulates Cell Cycle Through cyclin D1 and cyclin E1 in a Cell Specific Manner [BiSulfite-seq] [HeLa]
SRP075876	Cerebral Organoids Recapitulate Epigenomic Signatures of the Human Fetal Brain [Embryonic Stem Cell Line, Middle Frontal Gyrus]
SRP075910	Global delay in nascent strand DNA methylation [HCT116, HUES64 WT]
SRP076893	“Same Difference”: Comprehensive evaluation of four DNA methylation measurement platforms [Lung Fibroblast]
SRP080340	Evidence That Three Classes of Methylomes Specific for Stem, Somatic and Transformed Cells Are Set by Three Independent Mechanisms (Methyl-Seq) [Basophilic Erythroblasts]
SRP080893	Active and senescent human hematopoietic stem and progenitor cell whole genome bisulfite sequencing [DNA]
SRP082156	Cancer Associated Fibroblasts are defined by a core set of epigenome changes that contribute to the tumor phenotype [WGBS] [Cancer Associated Fibroblast, Normal Prostate Fibroblast]
SRP085035	Molecular Criteria for Defining the Naive Human Pluripotent State [methylation profiling] [Naive Embryonic Stem Cells, Primed Embryonic Stem Cells]
SRP089722	Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling [WGBS] [Primary Prostate Epithelial Cells (PrEC), Prostate Cancer Cell Line (LNCaP)]
SRP090105	The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis [WGBS_Hs] [Retina]
SRP092113	Splinted Ligation Adapter Tagging, a novel library preparation for whole genome bisulphite sequencing [ALL Cell Line, Lymphoblastoid Cell Line]
SRP092462	HUES8 TET1/2/3 TKO hESCs [Embryonic Stem Cells]
SRP093254	Whole Genome Bisulfite Sequencing of HUES8 WT and HUES8 TET1/2/3 TKO hESCs [HUES8 hESCs]
SRP093764	Epigenetic resetting of human pluripotency [ESC]
SRP094554	A Molecular signature for Delayed Graft Function [BS-Seq] [Kidney]
SRP094721	Epigenomic landscapes of hESC-derived neural rosettes [Neural Stem Cells]
SRP094960	Genomic profiling of human spermatogonial stem cells [WGBS] [Spermatogonial Stem Cells]
SRP095006	Genome-wide determination of on-target and off-target characteristics for RNA-guided DNA Methylation by dCas9 methyltransferases (CRISPRme) [WGBS] [Embryonic Kidney Cell Line]
SRP096028	Dental Pulp Stem Cells Model Early Life and Imprinted DNA Methylation Patterns. [Dental Pulp Stem Cells, LUHMES]
SRP097759	S-adenosylhomocysteine hydrolase participates in DNA methylation inheritance [HEK293]
SRP098648	Comprehensive evaluation of genome-wide 5-hydroxymethylcytosine profiling approaches in human DNA [BiSulfite-seq] [Adult Brain Frontal Lobe, LNCaP Clone]
SRP099603	Enrichment methods provide a feasible approach to comprehensive and adequately powered investigations of the methylome [Postmortem Brain Tissue]
SRP100067	Epigenome-wide analysis of DNA methylation in lung tissue shows concordance with blood studies and identifies tobacco smoke-inducible enhancers
SRP101887	Neuronal brain region-specific DNA methylation and chromatin accessibility are associated with neuropsychiatric trait heritability [Bisulfite-Seq] [Bulk Tissue, NeuN Neg, NeuN Pos]
SRP102997	Genome-wide nucleosome occupancy and DNA methylation profiling in endometriosis cells [hTERT Immortalized Endometriosis Cells]
SRP103077	Mapping DNA methylation and CTCF/cohesin occupancy on nascent chromatin and DNMT-targeted nascent chromatin [Embryonic Stem Cells]
SRP103794	Methylation DNA mediated KLF4 binding activity in glioblastoma cells [Glioblastoma Cells]
SRP103839	Single-cell Multi-omics Sequencing and Analyses of Human Colorectal Cancer [CRC, HeLa Contaminant]
SRP103943	DNA epigenome editing using CRISPR-Cas SunTag-directed DNMT3A [WGBS] [Epithelial HEK 293T Cells]
SRP104141	NicE-seq: high resolution open chromatin profiling [HCT116]
SRP104305	5hmC dynamically correlated with enhancer''s activities during hES-to-Pancreatic endoderm cell differentiation (Bisulfite-Seq) [ES Cells]
SRP104789	Culture of Human embryonic stem cells in different media [Embryonic Stem Cells]
SRP106910	Human memory CD8 T-cell effector-potential is epigenetically preserved during in vivo homeostasis [HuTCM, HuTEM, HuTN, HuTSCM, TCMD204, TEMD203, TND201, TSD202]
SRP107857	TRIM28-Regulated Transposon Repression Is Required for Human Germline Competency and Not Primed or Naive Human Pluripotency [Naive Embryonic Stem Cell, Primed Embryonic Stem Cell]
SRP107883	Archaic and modern bone DNA methylation maps from the Neanderthal, Denisovan, modern human and chimpanzee [Bone]
SRP113417	Chromatin and Transcriptional Dynamics in Adult Germline Stem Cells and Mammalian Spermatogenesis [Mature Sperm, Sperm, Spermatids, Spermatocytes, Spermatogonia, Spermatogonia (Thy1+)]
SRP115074	Lack of Repressive Capacity of Human Promoter DNA Methylation identified through Genome-Wide Epigenomic Manipulation [Brest Cancer Cell Line]
SRP116948	Whole genome bisulphite sequencing using the Illumina X system [Bisulfite-Seq] [EBV-transformed Lymphoblastoid Cell Line, Fetal Lung Fibroblast]
SRP117084	Transcription elongation regulates genome 3D structure [Monocyte Derived Macrophages (MDM)]
SRP117159	Homo sapiens cultivar:PLC/PRF/5 Raw sequence reads [Liver]
SRP119706	DNA hypermethylation encroachment at CpG island borders in cancer is predisposed by H3K4 monomethylation [WGBS_Hs] [Adjacent Benign Normal Prostate, Prostate Tumor]
SRP124518	UBE3A-mediated regulation of imprinted genes and epigenome-wide marks in human neurons [Chromosome Duplication Model Of Dup15q Syndrome, Neuronal Cell Line]
SRP125826	Intervals of unmethylated DNA spatially co-segregate in cis and in trans [WGBS] [Erythroid Progenitor Cells]
SRP125973	A modular dCas9-SunTag DNMT3A epigenome editing system overcomes pervasive off-target activity of direct fusion dCas9-DNMT3A constructs [Cervical Cancer Cell Line]
SRP125992	Activation of neuronal genes via LINE-1 elements upon global DNA demethylation in human neural progenitors [Fetal-Derived Neural Progenitor Cells (Sai)]
SRP126139	G-quadruplex structures moulds the DNA methylome [HaCaT]
SRP126677	Genome-wide profiling at single-nucleotide resolution of brain cell types in schizophrenia [WGBS] [NeuN, Olig2]
SRP126972	Distinct Epigenetic Subtypes Are Linked to Disease Progression in Low-Risk MDS [Peripheral Blood (PB) Cells]
SRP127273	Scalable and efficient single-cell DNA methylation sequencing by combinatorial indexing. [Epithelial; B-Lymphocyte;Fibroblast]
SRP127667	Epigenetic marks and nuclear transcriptomes of cardiac myocytes [Cardiac Myocyte Nuclei, SIRPA+ Cardiac Myocytes]
SRP128919	DNA methylation in hESC derived brain organoids and iPSC derived neurons, astrocytes and neural progenitors [Whole Organoid]
SRP130768	Homo sapiens bisulfite and mRNA sequencing of blood T cells and LCM collected lung cells [Alveolar, Bronchial, T]
SRP130992	Genome-wide Methylation in Cordblood CD4+ Cells from Newborns Exposed vs. Unexposed to Maternal Tobacco Smoke During Pregnancy [Cord Blood CD4+ Cells]
SRP131087	An epigenomic approach to identifying differential overlapping and cis-acting lncRNAs in cisplatin-resistant cancer cells [BiSulfite-seq] [Lung, Ovarian]
SRP131112	Endurance training remodels sperm-borne small RNA expression and methylation at neurological gene hotspots [RRBS] [Motile Semen]
SRP131790	Whole Genome Bisulfite Sequencing of Autism and Control Human BA9 Cortex [Dorsal Lateral Prefrontal Cortex]
SRP131900	Lymphocyte-specific chromatin accessibility pre-determines glucocorticoid resistance in acute lymphoblastic leukemia [WGBS] [ALL Xenograft Cells]
SRP132292	Genetic determinants and epigenetic effects of pioneer factor binding [WGBS] [Immortalized BJ Foreskin Fibroblast Cell Line]
SRP132785	Active BRAF-V600E is the key player in generation of a sessile serrated polyp-specific DNA methylation profile (WGBS data set) [Blood, Colon]
SRP133910	Homo sapiens Raw sequence reads [Blood, Lymphoblastoid Cell Line, Peripheral Blood]
SRP133941	Longitudinal Personal DNA Methylome Dynamics in a Human with a Chronic Condition [Peripheral Blood Mononuclear Cells]
SRP133999	Developmental origins define epigenomic differences between subcutaneous and visceral adipocytes [Bisulfite-Seq] [Blood, Subcutaneous Adipose, Visceral Adipose]
SRP136499	A genomic study of the contribution of DNA methylation to regulatory evolution in primates [Heart, Heart (Later Reclassified As Liver), Kidney, Liver, Lung]
SRP144098	DNMT3B maintains mCA landscape and regulates mCG status of bivalent promoters in human embryonic stem cells [Embryonic Stem Cell]
SRP144312	Widespread transposable element-driven oncogene expression in cancers [Lung Cancer Cell Line]
SRP148683	Comparison of transcriptome profiles of human embryo cultured in either closed or standard incubator [Preimplantation Embryo]
SRP151496	Generation of FOXO3 engineered human stem cells with enhanced efficacy and safety [ECs, MSCs, TransMSCs, VSMCs]
SRP155006	Epigenomic signatures in liver and blood of Wilson disease patients include hypermethylation of liver-specific enhancers [Liver, Whole Blood]
SRP156136	MethMotif: An integrative cell specific database of transcription factor binding motifs coupled with DNA methylation profiles [Colon, Spleen]
SRP158279	Epigenetic reprogramming at estrogen-receptor binding sites alters the 3D chromatin landscape in endocrine resistant breast cancer [WGBS] [Breast Cancer Cells]
SRP158409	H3K36me2 recruits DNMT3A and shapes intergenic DNA methylation landscapes [C3H Embryo-Derived Mesenchymal Progenitor Cells]
SRP158894	Optimization of the input amount of library for whole-genome bisulfite sequencing on HiSeq X Ten [Fibroblast-Like Cell]
SRP158895	Comparison of methylome data obtained with rPBAT and tPBAT. [Fibroblast-Like Cell]
SRP158940	N6-methyladenine DNA Modification in Glioblastoma [ChIP-seq, BiSulfite-seq, DIP-seq] [Patient Derived Glioblastoma Stem Cell]
SRP161745	Human retinal pigment epithelium [Cultured Retinal Pigment Epithelum, Eye Tissue]
SRP161783	Whole Genome Bisulfite Sequencing of Rett Syndrome and Control Human BA9 Cortex [Post-Mortem Brain]
SRP162996	Very long intergenic non-coding RNA transcripts and expression profiles are associated to specific childhood acute lymphoblastic leukemia subtypes [CD10+ CD19+ Cord Blood]
SRP163251	Rates of acquisition of de novo mutations in human pluripotent stem cells under different culture conditions [PSC]
SRP167041	Homo sapiens Epigenomics [Breast, Plasma]
SRP168427	Tet inactivation disrupts YY1 binding and long-range chromatin interactions to cause developmental defects in embryonic heart [Embryonic Heart]
SRP170543	Impaired DNA methylation in oocytes with a mutation in KHDC3L causing recurrent hydatidiform mole [Embryo Day 6]
SRP174219	Replication timing and epigenome remodelling are associated with the nature of chromosomal rearrangements in cancer [Bisulfite-Seq] [Breast]
SRP175163	Loss of hydroxymethylcytosine is an independent adverse prognostic factor in clear cell Renal Cell Carcinoma (ccRCC) and can be abrogated by ascorbic acid mediated TET activation [786-O]
SRP185639	DNMT3B has oncogenic activity but evidence suggests that it does not promote CIMP nor cooperate with activated BRAFV600E in human intestinal cancer. (WGBS) [Fetal Lung Fibroblasts]
SRP186015	Study of DNA methylation pattern in single basepair resolution in the human dopaminergic neurons [LUHMES Cell Line]
SRP186275	Bisulfite-seq profiling of the human neutrophil genome during PMA- and E. coli encounter-induced activation [Peripheral Blood Neutrophils]
SRP186642	Genome-wide methyl-cytosine competition by DNMT and TET [ESCs, Embryonic Stem Cell, EpiSCs, HUES64, HUES8, HUES8 Embryonic Stem Cells, In Vitro Derived Motor Neurons]
SRP187153	Comparison of methylome data generated with HiSeq X Ten and NovaSeq [IMR-90]
SRP192966	Gene expression, methylome and splicing of THP-1 monocytic cells and THP-1-derived macrophage [Monocytic Cell Line]
SRP193115	ATAC-Me captures spatiotemporal dynamics of DNA methylation across the chromatin accessible genome [THP-1 Monocyte]
SRP193431	Early detection of lung cancer by deep methylation sequencing of circulating tumor DNA [Plasma]
SRP193843	DNMT1 drives 4D genome rewiring during oncogene induced senescence [WI-38hTERT/GFP-RAF1-ER]
SRP194341	Whole-exome, transcriptome and epigenome data for homo sapiens from normal to dysplasia to colorectal cancer [Colon]
SRP198282	Hammer-seq to measure kinetics of DNA methylation maintenance in HeLa cells [Embryonic Stem Cell, Epithelial Adenocarcinoma]
SRP198624	Whole genome bisulfite sequencing of esophagus squamous cell carcinoma [Esophagus]
SRP199025	Molecular mechanism of KCNJ5 gene hotspot mutation in adrenal aldosteronoma [Adrenal Gland]
SRP199200	CATACOMB: an endogenous inducible gene that antagonizes H3K27 methylation activity of Polycomb Repressive complex 2 via a H3K27M-like mechanism [HEK-293T]
SRP213117	Single-cell transcriptome analysis of uniparental embryos reveals parent-of-origin effects on human preimplantation development [methylation] [AG Embryo_8-Cell, BI Embryo_8-Cell, PG Embryo_4-Cell, PG Embryo_8-Cell]
SRP213665	The strand-biased mitochondrial DNA methylome and its regulation by DNMT3A [HEK293T_WGBS] [HEK293T]
SRP215940	The DNA methylomes of hyper-IgM syndrome type 2 B cells provide insights into the roles of activation-induced deaminase prior to the germinal center reaction [Naive B Cell, Non-Class-Switched Memory B Cells]
SRP217135	Systematic evaluation of library preparation methods and sequencing platforms for high-throughput whole genome bisulfite sequencing [WGBS] [CD4, Neutrophils, Whole Blood]
SRP217139	Lactate mediated epigenetic reprogramming during cancer associated fibroblast formation [CAF, MSC]
SRP219798	Regulation of DNA Methylation at Enhancers by TET2 Finetunes Gene Transcription in ERa-Positive Breast Cancer Cells [MCF7 Cells]
SRP220230	Human, Chimpanzee, Gorilla, Orangutan, Macaque Epigenomics [LCL]
SRP220467	Human embryonic stem cell-derived organoidal retinoblastoma reveals cancerous origin and therapeutic target [Rb Organoids, Retinal Organoids]
SRP221227	Persistent epigenetic memory impedes rescue of the telomeric phenotype in human ICF iPSCs following DNMT3B correction [iPSCs]
SRP223055	Tibetan humans Raw sequence reads [Blood]
SRP223612	Whole Genome Bisulfite sequencing: Allele-specific DNA methylation is increased in cancers and its dense mapping in normal plus neoplastic cells increases the yield of disease-associated regulatory SNPs [Bladder Cell Line, Blood, Bone Marrow, Brain, Breast (Primary Tissue), Breast Cell Line, Cell Line, Liver, Lymph Node, Placenta, Placenta, Maternal]
SRP224808	Whole genome bisulfite sequencing of human spermatozoa reveals differentially methylated patterns from type 2 diabetic patients [Semen]
SRP226234	An ExtendedCulture System that Supports Human Primordial Germ Cell-Like Cells Survival and Initiation of DNA Methylation Erasure [hESCs]
SRP229996	Stem and effector CD8 T-cells from human cancers [CD8 T-cell]
SRP230221	Chromatin dynamics reveal circadian control of human in vitro islet maturation [WGBS] [Primary Adult Alpha Cell, Primary Adult Beta Cell, hPSC-derived Beta Cell, hPSC-derived Definitive Endoderm, hPSC-derived Endocrine Progenitor, hPSC-derived Pancreatic Progenitor 1, hPSC-derived Pancreatic Progenitor 2, hPSC-derived Poly-Hormonal Cell]
SRP230618	Differential DNA methylation profiles of HS ILAE type 1 in human temporal lobe epilepsy [Brain; Hippocampus]
SRP230793	Cord blood DNA methylome in newborns later diagnosed with autism spectrum disorder reflects early dysregulation of neurodevelopmental and X-linked genes [Umbilical Cord Blood]
SRP233253	Comparison of EM-seq and WGBS results [B-Lymphocyte, Lung, Plasma]
SRP237955	Molecular atlas of fetal and adult human liver sinusoidal endothelial cells: a F8 secreting cell [methylation III] [Hepatic Sinusoidal Endothelial Cells]
SRP238023	Reliable tumor detection using cerebrospinal fluid cell-free DNA methylomes in pediatric medulloblastoma [Cerebrospnial Fluid, Normal Cerebellum Tissue, Pediatric Medulloblastoma Tumr Tissue]
SRP239226	Principles of Signalling Pathway Modulation for Enhancing Human Naïve Pluripotency Induction [WGBS] [Embryonic Stem Cells]
SRP241842	REH MultiOmics [B Cell Precursor Leukemia]
SRP246939	Beta cell-specific CD8+ T cells maintain stem-cell memory-associated epigenetic programs during type 1 diabetes (WGBS) [HAART HIV TN CD8 T Cells, Polyclonal Naive CD8 T Cell HD, Polyclonal T1D Naive CD8 T Cells, Polyclonal TCM CD8 T Cells, Polyclonal TEM CD8 T Cells, Polyclonal TSCM CD8 T Cells, Tetramer+ CD8 T Cells, Tetramer+ HAART CD8 T Cells, Tetramer+ T1D CD8 T Cells]
SRP250803	Genome-wide R-loop landscapes during epigenetic programming and reprogramming [Embryonic Stem Cells, Induced Pluripotent Stem Cells, Mesenchymal Stem Cell, Neural Stem Cells, Vascular Endothelial Cells, Vascular Smooth Muscle Cells]
SRP251688	Signalling networks constructed by integrative analysis of multi-omics in peripheral blood mononuclear cells in systemic lupus erythematous patients [PBMCs]
SRP253848	LiBis: An ultrasensitive alignment method for low-input bisulfite sequencing [Blood, Tumor]
SRP253922	Long-term expansion with germline potential of human primordial germ cell-like cells in vitro [Bisulfite-seq] [585B1-BTAG]
SRP254660	H3K27M in Gliomas Causes a One-step Decrease in H3K27 Methylation and Reduced Spreading Within the Constraints of H3K36 Methylation [WGBS] [BT245, G477, HSJ-019, SU-DIPGXIII]
SRP259185	Multi-omics analysis reveals divergent epigenetic regulation of gene expression and drivers of esophageal squamous cell carcinoma (WGBS) [Adjacent Normal Esophageal Tissue, Esophageal Squa Carcinoma]
SRP259369	Epigenome Dysregulation Resulting from NSD1 mutation in Head and Neck Squamous Cell Carcinoma
SRP260840	Naïve human embryonic stem cells can give rise to cells with trophoblast-like transcriptome and methylome [Bisulfite-Seq] [Embryonic Stem Cells, Transdifferentiated Trophoblast Stem Cells, Trophoblast Stem Cells]
SRP261501	Tissue-Biased Expansion of DNMT3A-Mutant Clones Associated with Conserved Epigenetic Alterations [CD34+ HSPCs]
SRP261643	Comprehensive epigenomic profiling of human alveolar epithelial differentiation identifies key epigenetic states and transcription factor co-regulatory networks for maintenance of distal lung identity [In Vitro Differentiated AT1-like Cells, Purified Primary AT2 Cells]
SRP265926	2-hydroxyglutarate drives whole-genome hypermethylation in kidney cancer cells with inactivated VHL [Caki1 Cell Line, Wildtype VHL, Clone12, Exogenous Wildtype VHL Reintroduced, Clone30, Exogenous Wildtype VHL Reintroduced, Clone44, Exogenous Wildtype VHL Reintroduced, VHL Inactivated, Clone12, VHL Inactivated, Clone30, VHL Inactivated, Clone44]
SRP266187	Non-CG methylation and multiple epigenetic layers associate child abuse with immune and small GTPase dysregulation [Lateral Amygdala (Brain Tissue)]
SRP266653	TNF induced inflammatory transcription dynamics and epigenetic changes [HEK 293 Transfected With Reporter Construct]
SRP266759	DNA methylation repels binding of hypoxia-inducible transcription factors to maintain tumour immunotolerance [BS] [MCF7, SK-MEL-28]
SRP267867	Human ribosomal DNA (rDNA) epigenetic clock [Whole Blood]
SRP267967	Characterization of universal features of partially methylated domains across tissues and species [Breast Tumor, Lung]
SRP268755	Probing the signaling requirements for naïve human pluripotency by high-throughput chemical screening [WGBS] [Naive hESC, Naïve hESC, Primed hESC]
SRP268783	Acute depletion of CTCF rewires genome-wide chromatin accessibility
SRP268979	Loss of epigenetic suppression of retrotransposons with oncogenic potential in aging mammary luminal epithelial cells [Mammary Luminal Epithelial Cells]
SRP271639	Cell-free DNA Methylation and Transcriptomic Signature Prediction of Pregnancies with Adverse Outcomes [WGBS] [Plasma]
SRP272481	GATA transcription factors, SOX17 and TFAP2C, drive the human germ-cell specification program [Bisulfite-Seq] [585B1 hiPSCs]
SRP272595	WGBS analysis of various colon cancer cell lines [Colorectal Adenocarcinoma]
SRP273813	Whole genome methylation sequencing of circulating tumor cells (CTCs) in Lung cancer. [Adjacent Normal Tissue, Blood, Lung]
SRP278376	Epigenetic Landscape of Pediatric Ependymoma Recurrence [Brain]
SRP278588	DNA methyation of intragenic CpG islands are required for differentiation from iPSC to NPC [Induced Pluripotent Stem Cell, Induced Pluripotent Stem Cell Derived]
SRP282493	DNA methylation maintains integrity of higher order genome architecture (WGBS) [HCT116]
SRP286180	Comprehensive methylome sequencing reveals prognostic epigenetic biomarkers for prostate cancer mortality [Adjacent Normal, Tumour]
SRP286271	Homo sapiens Raw sequence reads [Cervical Cancer Adjacent Tissue, Cervical Cancer Tissue, Cervical Cells]
SRP286409	H3K27me3 shapes DNA methylome by inhibiting UHRF1-mediated H3 ubiquitination [Bisulfite-seq] [E14, HeLa]
SRP286872	Transient naive reprogramming corrects hiPS cells functionally and epigenetically [WGBS] [Embryonic Stem Cells, Keratinocytes, Mesenchymal Stem Cells, Pluripotent Stem Cells, Secondary Fibroblasts]
SRP291325	Transient naive reprogramming corrects hiPS cells functionally and epigenetically [WGBS 2] [Cultured Fibroblasts, Embryonic Stem Cells, Pluripotent Stem Cells, Reprogramming Intermediate Cells]
SRP293255	DNA Methylation Potential Energy Landscape Analysis of Pediatric Pre-B cell Acute Lymphoblastic Leukemia (ALL) and Normal B cells and precursors [Cell Line, Primary]
SRP298020	DNA methylation analysis for target regions in human smooth muscle cells. [Cultured Smooth Muscle Cells]
SRP298022	DNA hydroxymethylation analysis for target regions in human smooth muscle cells. [Cultured Smooth Muscle Cells]
SRP298508	Alternative splicing and the epigenome in CML remission [WGBS] [PBMCs]
SRP299418	cell-free DNA sequencing of plasma [Plasma]
SRP299802	Acute lymphoblastic leukemia displays a distinct highly methylated genome [ALL-SIL, DND41, Jurkat, LOUCY, MHH-CALL-2, MHH-CALL-4, MOLT-16, MUTZ5, NALM-16, NALM-6, PEER, PER-117, RPMI-8402, TALL-1]
SRP304105	Large-scale manipulation of promoter DNA methylation reveals context-specific transcriptional responses and stability [MCF-7]
SRP304130	Impact of exposures to persistent endocrine disrupting compounds on the sperm methylome in regions associated with neurodevelopmental disorders [Sperm]
SRP304684	Inherent genomic properties underlie the epigenomic heterogeneity of human induced pluripotent stem cells [WGBS]
SRP304712	Epigenome profiling in gastric carcinogenesis by whole genome bisulfite sequencing [Stomach]
SRP308490	Pan-cancer predictions of transcription factors mediating aberrant DNA methylation [HCC1954 Cells, hTERT-HME1 Cells]
SRP308810	Genome-wide Programmable Transcriptional Memory by CRISPR-based Epigenome Editing [HEK293T]
SRP308854	Age-associated cryptic transcription in mammalian stem cells is linked to permissive chromatin at cryptic promoters [WGBS]
SRP309314	Epigenomics of nasal mucosa in children with acute respiratory illness [Nasal Mucosa]
SRP309354	Stable DNMT3L Overexpression in SH-SY5Y Neurons Recreates a Facet of the Genome-Wide Down Syndrome DNA Methylation Signature [SH-SY5Y]
SRP309472	Epigenetic crosstalk [KYSE-30]
SRP310254	DNMT3A haploinsufficiency causes dichotomous DNA methylation defects at enhancers in mature human immune cells [BiSulfite-seq] [hESC-derived Macrophages]
SRP314963	The proline and serine rich protein PROSER1 mediates O-GlcNAcylation of TET2 to regulate DNA demethylation on UTX-dependent enhancers and CpG islands [WGBS] [Embryonic Kidney Cells]
SRP315039	DNA methylome and genome sequencing of human ovarian epithelial cell line [Ovarian Epithelial Cell Line]
SRP315878	Homo sapiens Epigenomics [Bone Marrow, Peripheral Blood]
SRP316059	NSCLP-Twins [Saliva DNA]
SRP316873	Whole-Genome Bisulfite Sequencing of Nasopharyngeal Carcinoma and Nasopharyngeal Epithelial Tissues [SeqCapEpi] [C17, C666, Methylation Control, NP361, NP361EBV, NP550EBV, NPC43]
SRP318399	DNA methylation profiles of four immune cell types from MS patients and healthy controls [CD14+ Monocytes, CD19+ B Cells, CD4+ T Cells, CD8+ T Cells]
SRP319892	Expanding highly homogenous population of human primordial germ cell like cells in long-term and feeder-free culture condition [WGBS] [EGC, Freshly Isolated PGCLC, Long-Term Culture PGCLC C56, Long-Term Culture PGCLC C63, Long-Term Culture PGCLC C71, Long-Term Culture PGCLC C84, iPSC]
SRP320538	Dynamic patterns of DNA methylation in the normal prostate epithelial differentiation program are targets of aberrant methylation in prostate cancer [BiSulfite-seq] [HPr1-AR]
SRP321573	Conservation and divergence of DNA methylation patterns and functions in vertebrates [Primary Dermal Fibroblasts, Psoas Muscle]
SRP321876	Genetic variation at mouse and human ribosomal DNA influences associated epigenetic states [Blood, Kidney]
SRP323032	Mapping the glucocorticoid gene regulatory network and alterations that contribute to steroid resistance in childhood acute lymphoblastic leukemia [WGBS] [ALL]
SRP323101	RRBS-based quantitative methylation analysis define 100% methylation fidelity CpG sites [Epithelial Cells, Lymphocyte Cells]
SRP323990	Identification of DNA Methylation Predicts Onset of PTSD and Depression Following Trauma [Peripheral Blood Mononuclear Cells]
SRP324016	Cerebrospinal fluid cell-free DNA methylomes subtyping pediatric medulloblastoma [Cerebrospnial Fluid]
SRP324100	Placental methylome reveals a 22q13.33 brain regulatory gene locus associated with autism [WGBS] [Placenta]
SRP325062	Cerebrospinal fluid cell-free DNA methylomes recapture pediatric medulloblastoma tissue's tumor feature [CSF, Tumor_tissue]
SRP325428	Systematic profiling of DNMT3A variants reveals protein instability mediated by the DCAF8 E3 ubiquitin ligase adaptor [Embryonic Stem Cells, Lymphoblastoid Cell Line]
SRP325722	Chemical-based external stimulation reprograms human somatic cells into pluripotency (WGBS) [Adult Adipose Derived Mesenchymal Stromal Cells, Chemically Induced Pluripotent Stem Cells, Embryonic Fibroblasts, hES Cells H1, hES Cells H9]
SRP325924	Distinct DNA methylation landscape between pediatric brain and adult brain [Cerebellum, Cerebrum]
SRP328700	Whole genome methylation profiliing between the IMU and KRT subtypes of HPV-associated head and neck cell carcinoma (HNSCC) [Head And Neck Cell Carcinoma]
SRP329794	Anchor-Based Bisulfite Sequencing determines genome-wide DNA methylation [Erythroleukemic Cell Line]
SRP330251	Vitamin B12 regulates the transcriptomes of human ileal epithelial cells (iECs) [Ileum]
SRP332046	The WGBS and ATAC-seq from human serum and amniotic cell [Blood]
SRP332277	Methyl-seq Human [Sperm]
SRP332448	H3K9 dimethylation safeguards cancer cells against activation of the Interferon pathway [WGBS] [U937]
SRP334550	Proinflammatory cytokines promote TET2-mediated DNA demethylation during CD8 T cell effector differentiation [CD8+ T Cells]
SRP336573	Perturbation of TET2 condensation induces genome-wide promiscuous DNA hypomethylation and curtails leukemia cell growth [Embryonic Stem Cells (mESCs), Leukemia Cell Line]
SRP337018	whole-genome wide DNA methylation aberration in HCC [Liver]
SRP337159	Homo sapiens Epigenomics [Sperm]
SRP337501	DNA methylation landscape and signature of CD4+ lymphocytes of lamina propria in Crohn's patients by reduced representation and bisulfite sequencing [BiSulfite-seq] [Isolated CD4+ Cells]
SRP338189	Deleting DNMT3A in CAR T cells prevents exhaustion and 1 enhances antitumor activity [T Cells]
SRP338680	Molecular profile of HepG2 cell line (IBMC) [Liver]
SRP338853	DNA methylation of MOLM-13 cells [AML, Cell Line]
SRP339574	Methylation Mediated Silencing of Protein Kinase C Zeta Induces Apoptosis Avoidance through ATM/Chk-2 Inactivation in Dedifferentiated Chondrosarcoma [Chondrosarcoma Cell Line]
SRP341621	LABS: linear amplification-based bisulfite sequencing for ultrasensitive cancer detection from cell-free DNA [Plasma Separated]
SRP342964	scSPLAT, a scalable plate-based protocol for single cell WGBS library preparation [Lymphoblast Cell Line]
SRP345048	Antigen cross-presentation in young tumor-bearing hosts promotes CD8 T cell terminal differentiation [WGBS] [Germ Cell Tumor]
SRP346828	NOMe-HiC: joint profiling of genetic variants, DNA methylation, chromatin accessibility, and 3D genome in the same DNA molecule [Lung Fibroblast Cell Line]
SRP346999	Whole genome bilsufite sequencing of sgTET2 HepG2 [Missing]
SRP348645	Transcriptomic and Epigenomic Profiles of CIC-knockout and IDH1 mutant cells [WGBS] [Immortalized Astrocyte Cells]
SRP352189	CRISPR-based targeted haplotype-resolved assembly of a megabase region [WGBS] [B Cell]
SRP353040	WGBS of control and DAC-treated tumor tissue from PDX model [Colorectal Cancer]
SRP353340	NOMe-Seq analysis of IMR-90 cell line [IMR-90]
SRP353536	Transcriptome and Bisulfite sequencing of drug treated breast cancer cell lines [Mammary Gland]
SRP353670	DNA Methylation Potential Energy Landscape Analysis of MLL-rearranged Acute Myeloid Leukemia (AML) and Normal hematopoietic precursors [WGBS] [Acute Myeloid Leukemia, GMP, HSC, L-MPP]
SRP353982	methyl-Seq of Pediatric ARDS Nasal and Bronchial Brushings [Bronchial, Nasal]
SRP356708	Young vs Old Fibroblast WGBS [Skin]
SRP357194	HPV integration generates cellular super enhancer and functions as ecDNA to regulate genome-wide transcription [C33A, CaSki, HeLa, S12, SiHa]
SRP357363	Whole-genome bisulfite sequencing anaysis of PSCs [Feeder-free PSC]
SRP357372	WGBS and RNA-seq of HUVECs transfected with siNC or siTET2 [Umbilical Vein Endothelial Cells]
SRP358957	WGBS of OLD and YOUNG primary Fibroblasts [Fibroblast]
SRP362494	The aberrant epigenome of DNMT3B-mutated ICF1 patient iPSCs is amenable to correction, with the exception of a subset of regions with H3K4me3- and/or CTCF-based epigenetic memory (WGBS) [iPSCs]
SRP364929	human rDNA obesity [Blood]
SRP367891	DNA methylation analysis of malignant and normal uveal melanocytes reveals novel molecular features of uveal melanoma [Primary Culture, UM Sorted Cells]
SRP368308	Lack of major genome-wide DNA methylation changes in succinate-treated human epithelial cells [Bronchial Cells]
SRP373598	GM12878 MultiOmics [B-Lymphocyte]
SRP373708	WGBS of primary and recurrent ovarian cancer tumors with and without BRCA1/2 mutations [Ovarian Cancer Tumors]
SRP373924	NOMe-Seq analysis of IMR-90 cell line II [IMR-90]
SRP375137	DNMT3A-mediated DNA demethylation is required for hypoxia induced EMT of human cancer cells
SRP376918	Droplet-based bisulfite sequencing for high-throughput profiling of single-cell DNA methylomes [B-Lymphocyte/ Embryonic Kidney/ Breast Cancer, Breast Cancer, Embryonic Kidney]
SRP377560	Reversible epigenetic alterations mediate PSMA expression heterogeneity in advanced metastatic prostate cancer. [LuCaP 77, LuCaP 78, LuCaP 93]
SRP384348	Evidence that direct inhibition of transcription factor binding is the prevailing mode of gene and repeat repression by DNA methylation [WGBS-Seq] [Ebryonic Stem Cells, Embryonic Kidney Cells, Ngn2_neurons]
SRP386415	SELF-PATTERNING OF HUMAN STEM CELLS INTO POST-IMPLANTATION LINEAGES [Embryonic Stem Cell Line]
SRP387154	Accurate simultaneous sequencing of genetic and epigenetic bases in DNA [B-Lymphocyte]
SRP387319	Dysfunction of 5-methylcytosine oxidases and the Polycomb protein RYBP leads to widespread DNA hypermethylation and cell transformation [WGBS] [Bronchial Cells]
SRP387971	Tonic-signaling chimeric antigen receptors drive human regulatory T cell exhaustion [CD4+ TCONV Cells, CD4+ TREG Cells]
SRP389118	Comprehensive analyses of partially methylated domains and differentially methylated regions in esophageal cancer reveal both cell-type- and cancer-specific epigenetic regulation [WGBS] [Esophageal Adenocarcinoma, Esophageal Squamous Cell Carcinoma]
SRP392105	Placental ischemia disrupts DNA methylation patterns of distal regulatory regions in rat [Placenta, Planceta]
SRP394454	Methylation profile of latent metastatic (Lat-M) cells from clear cell renal cell carcinoma (ccRCC) [Kidney Cancer Cells]
SRP395427	WGBS-seq and oxWGBS-seq Atlas for Oral Squamous Cell Carcinoma [Normal Adjacent Tissue, OSCC Tissue]
SRP396192	DNA Methylation Profile of Lip Tissue from Congenital Non-syndromic Cleft Lip and Palate Patients by Whole Genome Bisulfite Sequencing [Lip Tissue]
SRP396408	Neonatal necrotizing enterocolitis-associated DNA methylation signatures in the colon are evident in stool samples of affected individuals [Colon Tissue, Stool]
SRP396513	Rockfish: Detection of 5mC DNA Modifications Using Raw Nanopore Signal [Embryonic Stem Cell, Purified Cardiomyocyte]
SRP396738	Highly efficient and rapid generation of human pluripotent stem cells by chemical reprogramming (WGBS) [Adult Adipose Derived Mesenchymal Stromal Cells, Chemically Induced Pluripotent Stem Cells]
SRP397676	Loss of tight junctions disrupts gastrulation patterning and increases differentiation towards the germ cell lineage in human pluripotent stem cells [hiPSC]
SRP397737	Global hypermethylation of intestinal epithelial cells is a hallmark feature of neonatal surgical necrotizing enterocolitis [lcm_colon_ileum] [Epithelial]
SRP398111	to be updated [Blood]
SRP400466	Multiplex Epigenome Editing of MECP2 to Rescue Rett Syndrome Neurons (WGBS) [Embryonic Stem Cells]
SRP404930	LN-stem, tumor stem, tumor terminally differentiated CD8 T cells from human kidney cancer [CD8 T Cell, Endo CD8 T Cell, P14 CD8 T Cell]
SRP405874	Rebalancing TGFß1/BMP Signals Preserves Effector and Memory Programs in Terminally Dysfunctional CD8+ T Cells [Bisulfite-Seq] [CD8+]
SRP405928	Optimized bisulfite sequencing reveals the lack of 5-methylcytosine in mammalian mitochondrial DNA [WGBS] [Brain, Breast Cancer Cell, Embryonic Kidney Cell, Embryonic Stem Cell, Hepatocarcinoma Cell, Lung Adenocarcinoma Cell, Melanoma Cell, Neuroblastoma Cell, Platelet]
SRP408041	The catalytic activity of TET1 is required for human germ cell fate choice [Bisulfite-Seq] [hESC, hPGCLC]
SRP409096	Epigenetic dynamics during capacitation of naïve human pluripotent stem cells [PBAT] [Chemically Reset hPSC, Conventional hPSC, Embryo-Derived Naive hPSC]
SRP415835	Comprehensive sequence-based DNA methylation analysis suggests that PanIN lesions are acinar-derived and epigenetically primed for carcinogenesis [Acini, Ducts, PDAC Lesion, PanIN Lesion]
SRP420728	5-hydroxymethylcytosines regulate gene expression as a passive DNA demethylation resisting epigenetic mark in proliferative somatic cells [methylation] [HEK293T]
SRP423445	Ultrafast Bisulfite Sequencing for Efficient and Accurate 5-Methylcytosine Detection in DNA and RNA [Plasma, Stem Cell, mESC]
SRP424257	Direct enzymatic sequencing of 5-methylcytosine at single-base resolution [1] [Glioblastoma Tumor]
SRP426514	Epigenetic therapy activates TE-chimeric transcripts to provide additional source of antigens in glioblastoma stem cells [Astrocytes, Glioblastoma Stem Cell, Primary Dermal Fibroblast]
SRP426633	DNA methylation alterations in prostate cancer patient derived xenograft models revealed by whole genome bisulfite sequencing [Patient Derived Xenograft]
SRP430982	Whole genome bisulfite sequencing data of blood cfDNA form 29 CRC and 9 Non-CRC patients. [Blood]
SRP432935	Epigenetic modification sequencing data of human U2OS cells [Epithelial Cell]
SRP434804	MECP2 directly interacts with RNA polymerase II to modulate transcription in human neurons [WGBS] [Neuron]
SRP436137	Malignant Transformation Drives DNA Methylation Loss and Transcriptional Activation of Transposable Element Loci [WGBS] [Fibroblast]
SRP439675	NPC268 whole-genome bisulfite sequencing (WGBS) [Nasopharyngeal Carcinoma]
SRP440514	TNRC18 recognizes H3K9me3 to mediate transposable elements silencing at ERV regions [WGBS] [Embryonic Kidney]
SRP441171	Single-stranded Premethylated 5mC Adapters Uncovers the Methylation Profile of Plasma Ultrashort Single-Stranded Cell-Free DNA [Plasma]
SRP441209	Omics analyses of stromal cells from ACM patients reveal alterations in chromatin organization and mitochondrial homeostasis [Bisulfite-Seq] [Cardiac Mesenchymal Stromal Cells]
SRP446321	Non-canonical functions of UHRF1 maintain DNA methylation homeostasis in cancer cells [Colorectal Cancer Cell]
SRP450395	Epigenetic therapy targets the 3D epigenome in endocrine-resistant breast cancer [WGBS] [Breast Cancer PDX Model Gar15-13, Breast Cancer PDX Model HCI005]
SRP450683	Epigenomic landscape of colorectal adenoma and cancer [Colorectal]
SRP451599	The effect of Histone H3.3 knockdown on DNA methylation in HepG2 cells [Hepatoma Cell]
SRP452335	Epigenetic sequencing of allogeneic HSC-derived CAR-engineered NKT cells [BCAR-T, BCAR-iNKT, BCAR-iNKT-IL15]
SRP454277	Characterisation and reproducibility of the HumanMethylationEPIC v2.0 BeadChip for DNA methylation profiling [WGBS] [Prostate Tumour]
SRP456514	A modular dCas9-based recruitment platform for combinatorial epigenome editing [Embyonic Kidney]
SRP461642	Whole genome bisulfite sequencing identifies stage- and subtype-specific DNA methylation signatures in pancreatic cancer [Normal Pancreatic Ductal Organoid, PanIN Organoid, Pancreatic Ductal Adenocarcinoma Organoid]
SRP461724	Endogenous retrovirus LTR12C hold potential locus-dependent activities as promoter and/or enhancer [BiSulfite-seq] [Embryonic Kidney]
SRP462543	iPSC-based modeling of preeclampsia identifies defects in extravillous trophoblast differentiation [EVT, MSC, hTSC, iPSC]
SRP464289	DNMT3B PWWP mutations cause hypermethylation of heterochromatin (WGBS) [Colorectal Cancer Cell Line]
SRP464400	Epigenetic signature of human vitamin D3 and IL-10-conditioned regulatory DCs [SRS19057843, SRS19057844, SRS19057845, SRS19057846, SRS19057847, SRS19057848, SRS19057849, SRS19057850, SRS19057851, SRS19057852, SRS19057853, SRS19057854]
SRP467414	DNA methylation profiling identifies TBKBP1 as potent amplifier of cytotoxic activity in CMV-specific human CD8+ T cells [CD8 T Cell]
SRP470181	Hypermethylation of DNA impairs megakaryogenesis in delayed platelet recovery after allogeneic hematopoietic stem cell transplantation [Hematopoietic Stem Cells, Megakaryocyte Progenitor Cells]
SRP473783	scNanoSeq-CUT&Tag: a long-read single-cell CUT&Tag sequencing method for efficient chromatin modification profiling within individual cells [Lymphoblast]
SRP474233	Identification of differentially expressed tumour-related genes regulated by UHRF1 regulated DNA methylation [WGBS] [Breast Cancer Cell]
SRP478956	Divergent originations of parental DNA hydroxymethylation in human preimplantation embryos [Embryonic Stem Cells]
SRP485412	PRC2-AgeIndex: a universal biomarker of aging and rejuvenation [WGBS] [Dermal Fibroblasts, Foreskin Fibroblasts]
SRP490076	Persistent epigenome anomalies in induced pluripotent stem cells from late-onset sporadic Alzheimer's disease cases [BiSulfite-seq] [iPSC]
SRP490212	UHRF1 ubiquitin ligase activity supports the maintenance of low-density CpG methylation [BiSulfite-seq] [Colorectal Carcinoma Epithelial Cells]
SRP491820	Cell-free DNA Methylation Patterns in Aging and Their Association with Inflamm-aging [Plasma]
SRP494242	Methylation changes induced by alpha-hemolysin from Staphylococcus aureus in human primary Th17 lymphocytes. [Lymphocyte]
SRP496763	Charting the regulatory landscape of TP53 on transposable elements in cancer [WGBS] [SRS20802026, SRS20802027, SRS20802028, SRS20802029, SRS20802030, SRS20802031, SRS20802032, SRS20802033, SRS20802034, SRS20802035, SRS20802036, SRS20802037, SRS20802038, SRS20802039, SRS20802040, SRS20802041, SRS20802042, SRS20802043, SRS20802044, SRS20802045, SRS20802046, SRS20802047, SRS20802048, SRS20802049]
SRP499337	Repetitive element transcript accumulation is related to inflammaging in humans [PBMC]
SRP503688	Genome-wide DNA methylation seq data and RNA seq data in three paired HCC and normal tissue samples [HCC Tissue, Paracancerous Tissue]
SRP504106	Mutant IDH1 inhibition induces reverse transcriptase and dsDNA sensing to activate tumor immunity [human WGBS] [Tumor Cells]
SRP510797	Homo sapiens Raw sequence reads [Clear Renal Carcinoma Cells Caki1, Kaiso-deficient Caki1]
SRP511776	Patient TSC2 Mutant Cells Exhibit Aberrations in Early Neurodevelopment Accompanied by Changes in the DNA Methylome (Bisulfite-Seq) [Induced Pluripotent Stem Cells (iPSC), iPSC-derived Neural Progenitor Cells]
SRP514328	DNA 5-methylcytosine regulates genome-wide formation of G-quadruplex structures [WGBS] [Embryonic Kidney]
SRP515320	Epigenetic dysregulation of transposable elements in cognitive impairment and Alzheimer's disease [Isolated WBC]
SRP515825	Mitochondria-localized MBD2c facilitates mtDNA transcription and drug resistance [Bisulfite-Seq] [MDA-MB-468]
SRP519334	sciMETv3 Single-cell DNA Methylation Raw Sequence Reads [BA46]
SRP521389	Bisulfite-Free Whole-Genome Mapping of 5-Methylcytosine at Single-Base Resolution by TAD-seq [Embryonic Kidney]
SRP523710	Rapid Human Oogonia-like Cell Specification via Combinatorial Transcription Factor-Directed Differentiation [BiSulfite-seq] [DDX4+ Induced Oogonia-Like Cells, DDX4+ Induced Oogonia-Like Cells (No DNMT1i), DDX4+ Induced Oogonia-Like Cells, Naive Reset, hPGCLC, hiPSC_naivereset, hiPSC_primed]
SRP526064	Valine-restricted diet regulates DNA methylation [Bisulfite-Seq] [HCT116]
SRP533334	Methylation patterns of the nasal epigenome of hospitalized SARS-CoV-2 positive patients reveal insights into molecular mechanisms of COVID-19 [Nasopharyngeal Swab]
SRP543819	Seminal Plasma cell-free DNA [Seminal Plasma]

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All	*views*	AMR	HMR	CpG reads	CpG methylation	PMD
*experiment*
SRX6890787
SRX6890788
SRX6890789
SRX6890790
SRX6890791
SRX6890792
SRX6890793
SRX6890794
SRX6890795
SRX6890796
SRX6890797
SRX6890798
SRX6890799
SRX6890800
SRX6890801
SRX6890802
SRX6890804
SRX6890805
SRX6890806
SRX6890807
SRX6890808
SRX6890809
SRX6890810
SRX6890811
SRX6890812
SRX6890813
SRX6890814
SRX6890815
SRX6890816
SRX6890819
SRX6890820
SRX6890821
SRX6890822
SRX6890823
SRX6890828
SRX6890829
SRX6890830
SRX6890831
SRX6890832
SRX6890834
SRX6890835
SRX6890836
SRX6890837
SRX6890838
SRX6890840
SRX6890841
SRX6890842
SRX6890843
SRX6890844
SRX6890845
SRX6890846
SRX6890847
SRX6890848
SRX6890849
SRX6890850
SRX6890851
SRX6890852
SRX6890853
SRX6890854
SRX6890855
SRX6890856
SRX6890857
SRX6890858
SRX6890859
SRX6890860
SRX6890861
SRX6890862
SRX6890863
SRX6890864
SRX7904327
SRX7904328
SRX7904329
SRX7904330
SRX7904331
SRX7904332
SRX7904333
SRX7904334
*experiment*
All	*views*	AMR	HMR	CpG reads	CpG methylation	PMD

List subtracks: only selected/visible all ()

	experiment^↓1	views^↓2	Track Name^↓3
hide	SRX6890787	HMR	Breast (Primary Tissue) / SRX6890787 (HMR)	Data format
hide	SRX6890787	AMR	Breast (Primary Tissue) / SRX6890787 (AMR)	Data format
hide	SRX6890787	PMD	Breast (Primary Tissue) / SRX6890787 (PMD)	Data format
hide Configure	SRX6890787	CpG methylation	Breast (Primary Tissue) / SRX6890787 (CpG methylation)	Data format
hide Configure	SRX6890787	CpG reads	Breast (Primary Tissue) / SRX6890787 (CpG reads)	Data format
hide	SRX6890788	HMR	Blood / SRX6890788 (HMR)	Data format
hide	SRX6890788	AMR	Blood / SRX6890788 (AMR)	Data format
hide	SRX6890788	PMD	Blood / SRX6890788 (PMD)	Data format
hide Configure	SRX6890788	CpG methylation	Blood / SRX6890788 (CpG methylation)	Data format
hide Configure	SRX6890788	CpG reads	Blood / SRX6890788 (CpG reads)	Data format
hide	SRX6890789	AMR	Bone Marrow / SRX6890789 (AMR)	Data format
hide	SRX6890789	PMD	Bone Marrow / SRX6890789 (PMD)	Data format
hide Configure	SRX6890789	CpG methylation	Bone Marrow / SRX6890789 (CpG methylation)	Data format
hide Configure	SRX6890789	CpG reads	Bone Marrow / SRX6890789 (CpG reads)	Data format
hide	SRX6890790	AMR	Bone Marrow / SRX6890790 (AMR)	Data format
hide	SRX6890790	PMD	Bone Marrow / SRX6890790 (PMD)	Data format
hide Configure	SRX6890790	CpG methylation	Bone Marrow / SRX6890790 (CpG methylation)	Data format
hide Configure	SRX6890790	CpG reads	Bone Marrow / SRX6890790 (CpG reads)	Data format
hide	SRX6890791	AMR	Bone Marrow / SRX6890791 (AMR)	Data format
hide	SRX6890791	PMD	Bone Marrow / SRX6890791 (PMD)	Data format
hide Configure	SRX6890791	CpG methylation	Bone Marrow / SRX6890791 (CpG methylation)	Data format
hide Configure	SRX6890791	CpG reads	Bone Marrow / SRX6890791 (CpG reads)	Data format
hide	SRX6890792	HMR	Blood / SRX6890792 (HMR)	Data format
hide	SRX6890792	AMR	Blood / SRX6890792 (AMR)	Data format
hide	SRX6890792	PMD	Blood / SRX6890792 (PMD)	Data format
hide Configure	SRX6890792	CpG methylation	Blood / SRX6890792 (CpG methylation)	Data format
hide Configure	SRX6890792	CpG reads	Blood / SRX6890792 (CpG reads)	Data format
hide	SRX6890793	HMR	Blood / SRX6890793 (HMR)	Data format
hide	SRX6890793	AMR	Blood / SRX6890793 (AMR)	Data format
hide	SRX6890793	PMD	Blood / SRX6890793 (PMD)	Data format
hide Configure	SRX6890793	CpG methylation	Blood / SRX6890793 (CpG methylation)	Data format
hide Configure	SRX6890793	CpG reads	Blood / SRX6890793 (CpG reads)	Data format
hide	SRX6890794	HMR	Blood / SRX6890794 (HMR)	Data format
hide	SRX6890794	AMR	Blood / SRX6890794 (AMR)	Data format
hide	SRX6890794	PMD	Blood / SRX6890794 (PMD)	Data format
hide Configure	SRX6890794	CpG methylation	Blood / SRX6890794 (CpG methylation)	Data format
hide Configure	SRX6890794	CpG reads	Blood / SRX6890794 (CpG reads)	Data format
hide	SRX6890795	HMR	Blood / SRX6890795 (HMR)	Data format
hide	SRX6890795	AMR	Blood / SRX6890795 (AMR)	Data format
hide	SRX6890795	PMD	Blood / SRX6890795 (PMD)	Data format
hide Configure	SRX6890795	CpG methylation	Blood / SRX6890795 (CpG methylation)	Data format
hide Configure	SRX6890795	CpG reads	Blood / SRX6890795 (CpG reads)	Data format
hide	SRX6890796	HMR	Blood / SRX6890796 (HMR)	Data format
hide	SRX6890796	AMR	Blood / SRX6890796 (AMR)	Data format
hide	SRX6890796	PMD	Blood / SRX6890796 (PMD)	Data format
hide Configure	SRX6890796	CpG methylation	Blood / SRX6890796 (CpG methylation)	Data format
hide Configure	SRX6890796	CpG reads	Blood / SRX6890796 (CpG reads)	Data format
hide	SRX6890797	HMR	Bladder Cell Line / SRX6890797 (HMR)	Data format
hide	SRX6890797	AMR	Bladder Cell Line / SRX6890797 (AMR)	Data format
hide	SRX6890797	PMD	Bladder Cell Line / SRX6890797 (PMD)	Data format
hide Configure	SRX6890797	CpG methylation	Bladder Cell Line / SRX6890797 (CpG methylation)	Data format
hide Configure	SRX6890797	CpG reads	Bladder Cell Line / SRX6890797 (CpG reads)	Data format
hide	SRX6890798	HMR	Bladder Cell Line / SRX6890798 (HMR)	Data format
hide	SRX6890798	AMR	Bladder Cell Line / SRX6890798 (AMR)	Data format
hide	SRX6890798	PMD	Bladder Cell Line / SRX6890798 (PMD)	Data format
hide Configure	SRX6890798	CpG methylation	Bladder Cell Line / SRX6890798 (CpG methylation)	Data format
hide Configure	SRX6890798	CpG reads	Bladder Cell Line / SRX6890798 (CpG reads)	Data format
hide	SRX6890799	HMR	Liver / SRX6890799 (HMR)	Data format
hide	SRX6890799	AMR	Liver / SRX6890799 (AMR)	Data format
hide	SRX6890799	PMD	Liver / SRX6890799 (PMD)	Data format
hide Configure	SRX6890799	CpG methylation	Liver / SRX6890799 (CpG methylation)	Data format
hide Configure	SRX6890799	CpG reads	Liver / SRX6890799 (CpG reads)	Data format
hide	SRX6890800	HMR	Brain / SRX6890800 (HMR)	Data format
hide	SRX6890800	AMR	Brain / SRX6890800 (AMR)	Data format
hide	SRX6890800	PMD	Brain / SRX6890800 (PMD)	Data format
hide Configure	SRX6890800	CpG methylation	Brain / SRX6890800 (CpG methylation)	Data format
hide Configure	SRX6890800	CpG reads	Brain / SRX6890800 (CpG reads)	Data format
hide	SRX6890801	HMR	Brain / SRX6890801 (HMR)	Data format
hide	SRX6890801	AMR	Brain / SRX6890801 (AMR)	Data format
hide	SRX6890801	PMD	Brain / SRX6890801 (PMD)	Data format
hide Configure	SRX6890801	CpG methylation	Brain / SRX6890801 (CpG methylation)	Data format
hide Configure	SRX6890801	CpG reads	Brain / SRX6890801 (CpG reads)	Data format
hide	SRX6890802	HMR	Brain / SRX6890802 (HMR)	Data format
hide	SRX6890802	AMR	Brain / SRX6890802 (AMR)	Data format
hide	SRX6890802	PMD	Brain / SRX6890802 (PMD)	Data format
hide Configure	SRX6890802	CpG methylation	Brain / SRX6890802 (CpG methylation)	Data format
hide Configure	SRX6890802	CpG reads	Brain / SRX6890802 (CpG reads)	Data format
hide	SRX6890804	HMR	Liver / SRX6890804 (HMR)	Data format
hide	SRX6890804	AMR	Liver / SRX6890804 (AMR)	Data format
hide	SRX6890804	PMD	Liver / SRX6890804 (PMD)	Data format
hide Configure	SRX6890804	CpG methylation	Liver / SRX6890804 (CpG methylation)	Data format
hide Configure	SRX6890804	CpG reads	Liver / SRX6890804 (CpG reads)	Data format
hide	SRX6890805	HMR	Breast (Primary Tissue) / SRX6890805 (HMR)	Data format
hide	SRX6890805	AMR	Breast (Primary Tissue) / SRX6890805 (AMR)	Data format
hide	SRX6890805	PMD	Breast (Primary Tissue) / SRX6890805 (PMD)	Data format
hide Configure	SRX6890805	CpG methylation	Breast (Primary Tissue) / SRX6890805 (CpG methylation)	Data format
hide Configure	SRX6890805	CpG reads	Breast (Primary Tissue) / SRX6890805 (CpG reads)	Data format
hide	SRX6890806	AMR	Cell Line / SRX6890806 (AMR)	Data format
hide	SRX6890806	PMD	Cell Line / SRX6890806 (PMD)	Data format
hide Configure	SRX6890806	CpG methylation	Cell Line / SRX6890806 (CpG methylation)	Data format
hide Configure	SRX6890806	CpG reads	Cell Line / SRX6890806 (CpG reads)	Data format
hide	SRX6890807	HMR	Blood / SRX6890807 (HMR)	Data format
hide	SRX6890807	AMR	Blood / SRX6890807 (AMR)	Data format
hide	SRX6890807	PMD	Blood / SRX6890807 (PMD)	Data format
hide Configure	SRX6890807	CpG methylation	Blood / SRX6890807 (CpG methylation)	Data format
hide Configure	SRX6890807	CpG reads	Blood / SRX6890807 (CpG reads)	Data format
hide	SRX6890808	HMR	Blood / SRX6890808 (HMR)	Data format
hide	SRX6890808	AMR	Blood / SRX6890808 (AMR)	Data format
hide	SRX6890808	PMD	Blood / SRX6890808 (PMD)	Data format
hide Configure	SRX6890808	CpG methylation	Blood / SRX6890808 (CpG methylation)	Data format
hide Configure	SRX6890808	CpG reads	Blood / SRX6890808 (CpG reads)	Data format
hide	SRX6890809	HMR	Breast Cell Line / SRX6890809 (HMR)	Data format
hide	SRX6890809	AMR	Breast Cell Line / SRX6890809 (AMR)	Data format
hide	SRX6890809	PMD	Breast Cell Line / SRX6890809 (PMD)	Data format
hide Configure	SRX6890809	CpG methylation	Breast Cell Line / SRX6890809 (CpG methylation)	Data format
hide Configure	SRX6890809	CpG reads	Breast Cell Line / SRX6890809 (CpG reads)	Data format
hide	SRX6890810	HMR	Breast Cell Line / SRX6890810 (HMR)	Data format
hide	SRX6890810	AMR	Breast Cell Line / SRX6890810 (AMR)	Data format
hide	SRX6890810	PMD	Breast Cell Line / SRX6890810 (PMD)	Data format
hide Configure	SRX6890810	CpG methylation	Breast Cell Line / SRX6890810 (CpG methylation)	Data format
hide Configure	SRX6890810	CpG reads	Breast Cell Line / SRX6890810 (CpG reads)	Data format
hide	SRX6890811	HMR	Breast Cell Line / SRX6890811 (HMR)	Data format
hide	SRX6890811	AMR	Breast Cell Line / SRX6890811 (AMR)	Data format
hide	SRX6890811	PMD	Breast Cell Line / SRX6890811 (PMD)	Data format
hide Configure	SRX6890811	CpG methylation	Breast Cell Line / SRX6890811 (CpG methylation)	Data format
hide Configure	SRX6890811	CpG reads	Breast Cell Line / SRX6890811 (CpG reads)	Data format
hide	SRX6890812	HMR	Blood / SRX6890812 (HMR)	Data format
hide	SRX6890812	AMR	Blood / SRX6890812 (AMR)	Data format
hide	SRX6890812	PMD	Blood / SRX6890812 (PMD)	Data format
hide Configure	SRX6890812	CpG methylation	Blood / SRX6890812 (CpG methylation)	Data format
hide Configure	SRX6890812	CpG reads	Blood / SRX6890812 (CpG reads)	Data format
hide	SRX6890813	HMR	Blood / SRX6890813 (HMR)	Data format
hide	SRX6890813	AMR	Blood / SRX6890813 (AMR)	Data format
hide	SRX6890813	PMD	Blood / SRX6890813 (PMD)	Data format
hide Configure	SRX6890813	CpG methylation	Blood / SRX6890813 (CpG methylation)	Data format
hide Configure	SRX6890813	CpG reads	Blood / SRX6890813 (CpG reads)	Data format
hide	SRX6890814	HMR	Blood / SRX6890814 (HMR)	Data format
hide	SRX6890814	AMR	Blood / SRX6890814 (AMR)	Data format
hide	SRX6890814	PMD	Blood / SRX6890814 (PMD)	Data format
hide Configure	SRX6890814	CpG methylation	Blood / SRX6890814 (CpG methylation)	Data format
hide Configure	SRX6890814	CpG reads	Blood / SRX6890814 (CpG reads)	Data format
hide	SRX6890815	HMR	Blood / SRX6890815 (HMR)	Data format
hide	SRX6890815	AMR	Blood / SRX6890815 (AMR)	Data format
hide	SRX6890815	PMD	Blood / SRX6890815 (PMD)	Data format
hide Configure	SRX6890815	CpG methylation	Blood / SRX6890815 (CpG methylation)	Data format
hide Configure	SRX6890815	CpG reads	Blood / SRX6890815 (CpG reads)	Data format
hide	SRX6890816	HMR	Brain / SRX6890816 (HMR)	Data format
hide	SRX6890816	AMR	Brain / SRX6890816 (AMR)	Data format
hide	SRX6890816	PMD	Brain / SRX6890816 (PMD)	Data format
hide Configure	SRX6890816	CpG methylation	Brain / SRX6890816 (CpG methylation)	Data format
hide Configure	SRX6890816	CpG reads	Brain / SRX6890816 (CpG reads)	Data format
hide	SRX6890819	HMR	Brain / SRX6890819 (HMR)	Data format
hide	SRX6890819	AMR	Brain / SRX6890819 (AMR)	Data format
hide	SRX6890819	PMD	Brain / SRX6890819 (PMD)	Data format
hide Configure	SRX6890819	CpG methylation	Brain / SRX6890819 (CpG methylation)	Data format
hide Configure	SRX6890819	CpG reads	Brain / SRX6890819 (CpG reads)	Data format
hide	SRX6890820	HMR	Liver / SRX6890820 (HMR)	Data format
hide	SRX6890820	AMR	Liver / SRX6890820 (AMR)	Data format
hide	SRX6890820	PMD	Liver / SRX6890820 (PMD)	Data format
hide Configure	SRX6890820	CpG methylation	Liver / SRX6890820 (CpG methylation)	Data format
hide Configure	SRX6890820	CpG reads	Liver / SRX6890820 (CpG reads)	Data format
hide	SRX6890821	HMR	Brain / SRX6890821 (HMR)	Data format
hide	SRX6890821	AMR	Brain / SRX6890821 (AMR)	Data format
hide	SRX6890821	PMD	Brain / SRX6890821 (PMD)	Data format
hide Configure	SRX6890821	CpG methylation	Brain / SRX6890821 (CpG methylation)	Data format
hide Configure	SRX6890821	CpG reads	Brain / SRX6890821 (CpG reads)	Data format
hide	SRX6890822	HMR	Brain / SRX6890822 (HMR)	Data format
hide	SRX6890822	AMR	Brain / SRX6890822 (AMR)	Data format
hide	SRX6890822	PMD	Brain / SRX6890822 (PMD)	Data format
hide Configure	SRX6890822	CpG methylation	Brain / SRX6890822 (CpG methylation)	Data format
hide Configure	SRX6890822	CpG reads	Brain / SRX6890822 (CpG reads)	Data format
hide	SRX6890823	HMR	Brain / SRX6890823 (HMR)	Data format
hide	SRX6890823	AMR	Brain / SRX6890823 (AMR)	Data format
hide	SRX6890823	PMD	Brain / SRX6890823 (PMD)	Data format
hide Configure	SRX6890823	CpG methylation	Brain / SRX6890823 (CpG methylation)	Data format
hide Configure	SRX6890823	CpG reads	Brain / SRX6890823 (CpG reads)	Data format
hide	SRX6890828	HMR	Blood / SRX6890828 (HMR)	Data format
hide	SRX6890828	AMR	Blood / SRX6890828 (AMR)	Data format
hide	SRX6890828	PMD	Blood / SRX6890828 (PMD)	Data format
hide Configure	SRX6890828	CpG methylation	Blood / SRX6890828 (CpG methylation)	Data format
hide Configure	SRX6890828	CpG reads	Blood / SRX6890828 (CpG reads)	Data format
hide	SRX6890829	HMR	Blood / SRX6890829 (HMR)	Data format
hide	SRX6890829	AMR	Blood / SRX6890829 (AMR)	Data format
hide	SRX6890829	PMD	Blood / SRX6890829 (PMD)	Data format
hide Configure	SRX6890829	CpG methylation	Blood / SRX6890829 (CpG methylation)	Data format
hide Configure	SRX6890829	CpG reads	Blood / SRX6890829 (CpG reads)	Data format
hide	SRX6890830	AMR	Placenta / SRX6890830 (AMR)	Data format
hide	SRX6890830	PMD	Placenta / SRX6890830 (PMD)	Data format
hide Configure	SRX6890830	CpG methylation	Placenta / SRX6890830 (CpG methylation)	Data format
hide Configure	SRX6890830	CpG reads	Placenta / SRX6890830 (CpG reads)	Data format
hide	SRX6890831	AMR	Placenta / SRX6890831 (AMR)	Data format
hide	SRX6890831	PMD	Placenta / SRX6890831 (PMD)	Data format
hide Configure	SRX6890831	CpG methylation	Placenta / SRX6890831 (CpG methylation)	Data format
hide Configure	SRX6890831	CpG reads	Placenta / SRX6890831 (CpG reads)	Data format
hide	SRX6890832	HMR	Lymph Node / SRX6890832 (HMR)	Data format
hide	SRX6890832	AMR	Lymph Node / SRX6890832 (AMR)	Data format
hide	SRX6890832	PMD	Lymph Node / SRX6890832 (PMD)	Data format
hide Configure	SRX6890832	CpG methylation	Lymph Node / SRX6890832 (CpG methylation)	Data format
hide Configure	SRX6890832	CpG reads	Lymph Node / SRX6890832 (CpG reads)	Data format
hide	SRX6890834	HMR	Blood / SRX6890834 (HMR)	Data format
hide	SRX6890834	AMR	Blood / SRX6890834 (AMR)	Data format
hide	SRX6890834	PMD	Blood / SRX6890834 (PMD)	Data format
hide Configure	SRX6890834	CpG methylation	Blood / SRX6890834 (CpG methylation)	Data format
hide Configure	SRX6890834	CpG reads	Blood / SRX6890834 (CpG reads)	Data format
hide	SRX6890835	HMR	Blood / SRX6890835 (HMR)	Data format
hide	SRX6890835	AMR	Blood / SRX6890835 (AMR)	Data format
hide	SRX6890835	PMD	Blood / SRX6890835 (PMD)	Data format
hide Configure	SRX6890835	CpG methylation	Blood / SRX6890835 (CpG methylation)	Data format
hide Configure	SRX6890835	CpG reads	Blood / SRX6890835 (CpG reads)	Data format
hide	SRX6890836	HMR	Blood / SRX6890836 (HMR)	Data format
hide	SRX6890836	AMR	Blood / SRX6890836 (AMR)	Data format
hide	SRX6890836	PMD	Blood / SRX6890836 (PMD)	Data format
hide Configure	SRX6890836	CpG methylation	Blood / SRX6890836 (CpG methylation)	Data format
hide Configure	SRX6890836	CpG reads	Blood / SRX6890836 (CpG reads)	Data format
hide	SRX6890837	HMR	Blood / SRX6890837 (HMR)	Data format
hide	SRX6890837	AMR	Blood / SRX6890837 (AMR)	Data format
hide	SRX6890837	PMD	Blood / SRX6890837 (PMD)	Data format
hide Configure	SRX6890837	CpG methylation	Blood / SRX6890837 (CpG methylation)	Data format
hide Configure	SRX6890837	CpG reads	Blood / SRX6890837 (CpG reads)	Data format
hide	SRX6890838	HMR	Blood / SRX6890838 (HMR)	Data format
hide	SRX6890838	AMR	Blood / SRX6890838 (AMR)	Data format
hide	SRX6890838	PMD	Blood / SRX6890838 (PMD)	Data format
hide Configure	SRX6890838	CpG methylation	Blood / SRX6890838 (CpG methylation)	Data format
hide Configure	SRX6890838	CpG reads	Blood / SRX6890838 (CpG reads)	Data format
hide	SRX6890840	HMR	Blood / SRX6890840 (HMR)	Data format
hide	SRX6890840	AMR	Blood / SRX6890840 (AMR)	Data format
hide	SRX6890840	PMD	Blood / SRX6890840 (PMD)	Data format
hide Configure	SRX6890840	CpG methylation	Blood / SRX6890840 (CpG methylation)	Data format
hide Configure	SRX6890840	CpG reads	Blood / SRX6890840 (CpG reads)	Data format
hide	SRX6890841	HMR	Blood / SRX6890841 (HMR)	Data format
hide	SRX6890841	AMR	Blood / SRX6890841 (AMR)	Data format
hide	SRX6890841	PMD	Blood / SRX6890841 (PMD)	Data format
hide Configure	SRX6890841	CpG methylation	Blood / SRX6890841 (CpG methylation)	Data format
hide Configure	SRX6890841	CpG reads	Blood / SRX6890841 (CpG reads)	Data format
hide	SRX6890842	HMR	Blood / SRX6890842 (HMR)	Data format
hide	SRX6890842	AMR	Blood / SRX6890842 (AMR)	Data format
hide	SRX6890842	PMD	Blood / SRX6890842 (PMD)	Data format
hide Configure	SRX6890842	CpG methylation	Blood / SRX6890842 (CpG methylation)	Data format
hide Configure	SRX6890842	CpG reads	Blood / SRX6890842 (CpG reads)	Data format
hide	SRX6890843	HMR	Blood / SRX6890843 (HMR)	Data format
hide	SRX6890843	AMR	Blood / SRX6890843 (AMR)	Data format
hide	SRX6890843	PMD	Blood / SRX6890843 (PMD)	Data format
hide Configure	SRX6890843	CpG methylation	Blood / SRX6890843 (CpG methylation)	Data format
hide Configure	SRX6890843	CpG reads	Blood / SRX6890843 (CpG reads)	Data format
hide	SRX6890844	HMR	Blood / SRX6890844 (HMR)	Data format
hide	SRX6890844	AMR	Blood / SRX6890844 (AMR)	Data format
hide	SRX6890844	PMD	Blood / SRX6890844 (PMD)	Data format
hide Configure	SRX6890844	CpG methylation	Blood / SRX6890844 (CpG methylation)	Data format
hide Configure	SRX6890844	CpG reads	Blood / SRX6890844 (CpG reads)	Data format
hide	SRX6890845	HMR	Blood / SRX6890845 (HMR)	Data format
hide	SRX6890845	AMR	Blood / SRX6890845 (AMR)	Data format
hide	SRX6890845	PMD	Blood / SRX6890845 (PMD)	Data format
hide Configure	SRX6890845	CpG methylation	Blood / SRX6890845 (CpG methylation)	Data format
hide Configure	SRX6890845	CpG reads	Blood / SRX6890845 (CpG reads)	Data format
hide	SRX6890846	HMR	Blood / SRX6890846 (HMR)	Data format
hide	SRX6890846	AMR	Blood / SRX6890846 (AMR)	Data format
hide	SRX6890846	PMD	Blood / SRX6890846 (PMD)	Data format
hide Configure	SRX6890846	CpG methylation	Blood / SRX6890846 (CpG methylation)	Data format
hide Configure	SRX6890846	CpG reads	Blood / SRX6890846 (CpG reads)	Data format
hide	SRX6890847	HMR	Blood / SRX6890847 (HMR)	Data format
hide	SRX6890847	AMR	Blood / SRX6890847 (AMR)	Data format
hide	SRX6890847	PMD	Blood / SRX6890847 (PMD)	Data format
hide Configure	SRX6890847	CpG methylation	Blood / SRX6890847 (CpG methylation)	Data format
hide Configure	SRX6890847	CpG reads	Blood / SRX6890847 (CpG reads)	Data format
hide	SRX6890848	HMR	Blood / SRX6890848 (HMR)	Data format
hide	SRX6890848	AMR	Blood / SRX6890848 (AMR)	Data format
hide	SRX6890848	PMD	Blood / SRX6890848 (PMD)	Data format
hide Configure	SRX6890848	CpG methylation	Blood / SRX6890848 (CpG methylation)	Data format
hide Configure	SRX6890848	CpG reads	Blood / SRX6890848 (CpG reads)	Data format
hide	SRX6890849	HMR	Blood / SRX6890849 (HMR)	Data format
hide	SRX6890849	AMR	Blood / SRX6890849 (AMR)	Data format
hide	SRX6890849	PMD	Blood / SRX6890849 (PMD)	Data format
hide Configure	SRX6890849	CpG methylation	Blood / SRX6890849 (CpG methylation)	Data format
hide Configure	SRX6890849	CpG reads	Blood / SRX6890849 (CpG reads)	Data format
hide	SRX6890850	HMR	Blood / SRX6890850 (HMR)	Data format
hide	SRX6890850	AMR	Blood / SRX6890850 (AMR)	Data format
hide	SRX6890850	PMD	Blood / SRX6890850 (PMD)	Data format
hide Configure	SRX6890850	CpG methylation	Blood / SRX6890850 (CpG methylation)	Data format
hide Configure	SRX6890850	CpG reads	Blood / SRX6890850 (CpG reads)	Data format
hide	SRX6890851	HMR	Blood / SRX6890851 (HMR)	Data format
hide	SRX6890851	AMR	Blood / SRX6890851 (AMR)	Data format
hide	SRX6890851	PMD	Blood / SRX6890851 (PMD)	Data format
hide Configure	SRX6890851	CpG methylation	Blood / SRX6890851 (CpG methylation)	Data format
hide Configure	SRX6890851	CpG reads	Blood / SRX6890851 (CpG reads)	Data format
hide	SRX6890852	AMR	Lymph Node / SRX6890852 (AMR)	Data format
hide	SRX6890852	PMD	Lymph Node / SRX6890852 (PMD)	Data format
hide Configure	SRX6890852	CpG methylation	Lymph Node / SRX6890852 (CpG methylation)	Data format
hide Configure	SRX6890852	CpG reads	Lymph Node / SRX6890852 (CpG reads)	Data format
hide	SRX6890853	AMR	Lymph Node / SRX6890853 (AMR)	Data format
hide	SRX6890853	PMD	Lymph Node / SRX6890853 (PMD)	Data format
hide Configure	SRX6890853	CpG methylation	Lymph Node / SRX6890853 (CpG methylation)	Data format
hide Configure	SRX6890853	CpG reads	Lymph Node / SRX6890853 (CpG reads)	Data format
hide	SRX6890854	AMR	Lymph Node / SRX6890854 (AMR)	Data format
hide	SRX6890854	PMD	Lymph Node / SRX6890854 (PMD)	Data format
hide Configure	SRX6890854	CpG methylation	Lymph Node / SRX6890854 (CpG methylation)	Data format
hide Configure	SRX6890854	CpG reads	Lymph Node / SRX6890854 (CpG reads)	Data format
hide	SRX6890855	HMR	Brain / SRX6890855 (HMR)	Data format
hide	SRX6890855	AMR	Brain / SRX6890855 (AMR)	Data format
hide	SRX6890855	PMD	Brain / SRX6890855 (PMD)	Data format
hide Configure	SRX6890855	CpG methylation	Brain / SRX6890855 (CpG methylation)	Data format
hide Configure	SRX6890855	CpG reads	Brain / SRX6890855 (CpG reads)	Data format
hide	SRX6890856	AMR	Brain / SRX6890856 (AMR)	Data format
hide	SRX6890856	PMD	Brain / SRX6890856 (PMD)	Data format
hide Configure	SRX6890856	CpG methylation	Brain / SRX6890856 (CpG methylation)	Data format
hide Configure	SRX6890856	CpG reads	Brain / SRX6890856 (CpG reads)	Data format
hide	SRX6890857	AMR	Brain / SRX6890857 (AMR)	Data format
hide	SRX6890857	PMD	Brain / SRX6890857 (PMD)	Data format
hide Configure	SRX6890857	CpG methylation	Brain / SRX6890857 (CpG methylation)	Data format
hide Configure	SRX6890857	CpG reads	Brain / SRX6890857 (CpG reads)	Data format
hide	SRX6890858	AMR	Brain / SRX6890858 (AMR)	Data format
hide	SRX6890858	PMD	Brain / SRX6890858 (PMD)	Data format
hide Configure	SRX6890858	CpG methylation	Brain / SRX6890858 (CpG methylation)	Data format
hide Configure	SRX6890858	CpG reads	Brain / SRX6890858 (CpG reads)	Data format
hide	SRX6890859	HMR	Brain / SRX6890859 (HMR)	Data format
hide	SRX6890859	AMR	Brain / SRX6890859 (AMR)	Data format
hide	SRX6890859	PMD	Brain / SRX6890859 (PMD)	Data format
hide Configure	SRX6890859	CpG methylation	Brain / SRX6890859 (CpG methylation)	Data format
hide Configure	SRX6890859	CpG reads	Brain / SRX6890859 (CpG reads)	Data format
hide	SRX6890860	AMR	Bone Marrow / SRX6890860 (AMR)	Data format
hide	SRX6890860	PMD	Bone Marrow / SRX6890860 (PMD)	Data format
hide Configure	SRX6890860	CpG methylation	Bone Marrow / SRX6890860 (CpG methylation)	Data format
hide Configure	SRX6890860	CpG reads	Bone Marrow / SRX6890860 (CpG reads)	Data format
hide	SRX6890861	AMR	Bone Marrow / SRX6890861 (AMR)	Data format
hide	SRX6890861	PMD	Bone Marrow / SRX6890861 (PMD)	Data format
hide Configure	SRX6890861	CpG methylation	Bone Marrow / SRX6890861 (CpG methylation)	Data format
hide Configure	SRX6890861	CpG reads	Bone Marrow / SRX6890861 (CpG reads)	Data format
hide	SRX6890862	AMR	Bone Marrow / SRX6890862 (AMR)	Data format
hide	SRX6890862	PMD	Bone Marrow / SRX6890862 (PMD)	Data format
hide Configure	SRX6890862	CpG methylation	Bone Marrow / SRX6890862 (CpG methylation)	Data format
hide Configure	SRX6890862	CpG reads	Bone Marrow / SRX6890862 (CpG reads)	Data format
hide	SRX6890863	HMR	Blood / SRX6890863 (HMR)	Data format
hide	SRX6890863	AMR	Blood / SRX6890863 (AMR)	Data format
hide	SRX6890863	PMD	Blood / SRX6890863 (PMD)	Data format
hide Configure	SRX6890863	CpG methylation	Blood / SRX6890863 (CpG methylation)	Data format
hide Configure	SRX6890863	CpG reads	Blood / SRX6890863 (CpG reads)	Data format
hide	SRX6890864	HMR	Blood / SRX6890864 (HMR)	Data format
hide	SRX6890864	AMR	Blood / SRX6890864 (AMR)	Data format
hide	SRX6890864	PMD	Blood / SRX6890864 (PMD)	Data format
hide Configure	SRX6890864	CpG methylation	Blood / SRX6890864 (CpG methylation)	Data format
hide Configure	SRX6890864	CpG reads	Blood / SRX6890864 (CpG reads)	Data format
hide	SRX7904327	HMR	Blood / SRX7904327 (HMR)	Data format
hide	SRX7904327	AMR	Blood / SRX7904327 (AMR)	Data format
hide	SRX7904327	PMD	Blood / SRX7904327 (PMD)	Data format
hide Configure	SRX7904327	CpG methylation	Blood / SRX7904327 (CpG methylation)	Data format
hide Configure	SRX7904327	CpG reads	Blood / SRX7904327 (CpG reads)	Data format
hide	SRX7904328	HMR	Bone Marrow / SRX7904328 (HMR)	Data format
hide	SRX7904328	AMR	Bone Marrow / SRX7904328 (AMR)	Data format
hide	SRX7904328	PMD	Bone Marrow / SRX7904328 (PMD)	Data format
hide Configure	SRX7904328	CpG methylation	Bone Marrow / SRX7904328 (CpG methylation)	Data format
hide Configure	SRX7904328	CpG reads	Bone Marrow / SRX7904328 (CpG reads)	Data format
hide	SRX7904329	HMR	Brain / SRX7904329 (HMR)	Data format
hide	SRX7904329	AMR	Brain / SRX7904329 (AMR)	Data format
hide	SRX7904329	PMD	Brain / SRX7904329 (PMD)	Data format
hide Configure	SRX7904329	CpG methylation	Brain / SRX7904329 (CpG methylation)	Data format
hide Configure	SRX7904329	CpG reads	Brain / SRX7904329 (CpG reads)	Data format
hide	SRX7904330	HMR	Blood / SRX7904330 (HMR)	Data format
hide	SRX7904330	AMR	Blood / SRX7904330 (AMR)	Data format
hide	SRX7904330	PMD	Blood / SRX7904330 (PMD)	Data format
hide Configure	SRX7904330	CpG methylation	Blood / SRX7904330 (CpG methylation)	Data format
hide Configure	SRX7904330	CpG reads	Blood / SRX7904330 (CpG reads)	Data format
hide	SRX7904331	HMR	Blood / SRX7904331 (HMR)	Data format
hide	SRX7904331	AMR	Blood / SRX7904331 (AMR)	Data format
hide	SRX7904331	PMD	Blood / SRX7904331 (PMD)	Data format
hide Configure	SRX7904331	CpG methylation	Blood / SRX7904331 (CpG methylation)	Data format
hide Configure	SRX7904331	CpG reads	Blood / SRX7904331 (CpG reads)	Data format
hide	SRX7904332	HMR	Blood / SRX7904332 (HMR)	Data format
hide	SRX7904332	AMR	Blood / SRX7904332 (AMR)	Data format
hide	SRX7904332	PMD	Blood / SRX7904332 (PMD)	Data format
hide Configure	SRX7904332	CpG methylation	Blood / SRX7904332 (CpG methylation)	Data format
hide Configure	SRX7904332	CpG reads	Blood / SRX7904332 (CpG reads)	Data format
hide	SRX7904333	AMR	Placenta, Maternal / SRX7904333 (AMR)	Data format
hide	SRX7904333	PMD	Placenta, Maternal / SRX7904333 (PMD)	Data format
hide Configure	SRX7904333	CpG methylation	Placenta, Maternal / SRX7904333 (CpG methylation)	Data format
hide Configure	SRX7904333	CpG reads	Placenta, Maternal / SRX7904333 (CpG reads)	Data format
hide	SRX7904334	AMR	Placenta, Maternal / SRX7904334 (AMR)	Data format
hide	SRX7904334	PMD	Placenta, Maternal / SRX7904334 (PMD)	Data format
hide Configure	SRX7904334	CpG methylation	Placenta, Maternal / SRX7904334 (CpG methylation)	Data format
hide Configure	SRX7904334	CpG reads	Placenta, Maternal / SRX7904334 (CpG reads)	Data format

Assembly: Human Dec. 2013 (GRCh38/hg38)

Study title: Whole Genome Bisulfite sequencing: Allele-specific DNA methylation is increased in cancers and its dense mapping in normal plus neoplastic cells increases the yield of disease-associated regulatory SNPs
SRA: SRP223612
GEO: GSE137879
Pubmed: 32594908

Experiment	Label	Methylation	Coverage	HMRs	HMR size	AMRs	AMR size	PMDs	PMD size	Conversion	Title
SRX6890787	Breast (Primary Tissue)	0.738	44.4	66341	1618.1	9823	990.4	3964	27931.1	0.988	GSM4090863: sample_1_breast; Homo sapiens; Bisulfite-Seq
SRX6890788	Blood	0.787	61.0	69524	988.8	4056	1036.3	3723	13894.6	0.950	GSM4090864: sample_10_B_cells; Homo sapiens; Bisulfite-Seq
SRX6890789	Bone Marrow	0.406	46.0	136418	10347.1	4549	1116.4	6823	243022.9	0.989	GSM4090865: sample_100_myeloma; Homo sapiens; Bisulfite-Seq
SRX6890790	Bone Marrow	0.403	48.6	59927	24426.4	59498	1765.4	4689	399231.8	0.989	GSM4090866: sample_101_myeloma; Homo sapiens; Bisulfite-Seq
SRX6890791	Bone Marrow	0.432	55.9	55138	25888.2	51211	1858.9	5010	356261.1	0.989	GSM4090867: sample_102_myeloma; Homo sapiens; Bisulfite-Seq
SRX6890792	Blood	0.792	44.2	72041	935.0	1516	844.0	4349	10263.0	0.988	GSM4090868: sample_11_B_cells; Homo sapiens; Bisulfite-Seq
SRX6890793	Blood	0.807	42.8	72467	953.6	1038	895.0	4665	12276.1	0.989	GSM4090869: sample_12_B_cells; Homo sapiens; Bisulfite-Seq
SRX6890794	Blood	0.818	58.9	67595	1081.3	1698	1067.5	4781	15523.3	0.989	GSM4090870: sample_13_B_cells; Homo sapiens; Bisulfite-Seq
SRX6890795	Blood	0.789	41.5	70129	979.4	2321	942.3	3473	12689.1	0.989	GSM4090871: sample_14_B_cells; Homo sapiens; Bisulfite-Seq
SRX6890796	Blood	0.714	46.2	52818	1036.0	1237	900.3	2075	10872.5	0.989	GSM4090872: sample_15_B_cells; Homo sapiens; Bisulfite-Seq
SRX6890797	Bladder Cell Line	0.702	34.5	98066	1020.6	781	943.4	2301	13300.4	0.987	GSM4090873: sample_16_bladder_epith_cells; Homo sapiens; Bisulfite-Seq
SRX6890798	Bladder Cell Line	0.671	25.4	80983	1581.5	1503	1195.6	3629	169954.8	0.987	GSM4090874: sample_17_bladder_epith_cells; Homo sapiens; Bisulfite-Seq
SRX6890799	Liver	0.752	24.2	49729	1095.8	3585	904.8	2719	20235.4	0.988	GSM4090875: sample_2_liver; Homo sapiens; Bisulfite-Seq
SRX6890800	Brain	0.750	51.8	84524	1366.9	3207	1010.1	4618	31143.1	0.966	GSM4090876: sample_20_brain; Homo sapiens; Bisulfite-Seq
SRX6890801	Brain	0.750	56.4	85075	1325.4	3371	1008.6	4668	30206.0	0.964	GSM4090877: sample_22_brain; Homo sapiens; Bisulfite-Seq
SRX6890802	Brain	0.751	70.5	84949	1393.7	3952	1022.3	4832	30465.4	0.963	GSM4090878: sample_23_brain; Homo sapiens; Bisulfite-Seq
SRX6890804	Liver	0.737	22.7	55797	1090.2	1569	911.7	2996	21721.5	0.986	GSM4090880: sample_3_liver; Homo sapiens; Bisulfite-Seq
SRX6890805	Breast (Primary Tissue)	0.725	48.3	67935	1554.6	8927	997.8	4013	27582.6	0.988	GSM4090881: sample_31_breast; Homo sapiens; Bisulfite-Seq
SRX6890806	Cell Line	0.490	27.2	54171	13745.7	1930	1080.5	1777	966289.4	0.989	GSM4090882: sample_36_GM12878_LCL; Homo sapiens; Bisulfite-Seq
SRX6890807	Blood	0.786	24.4	80231	864.4	1364	1087.1	3933	11056.5	0.988	GSM4090883: sample_37_macrophages_type_1; Homo sapiens; Bisulfite-Seq
SRX6890808	Blood	0.792	20.2	78256	868.1	1228	1092.2	4228	10377.8	0.988	GSM4090884: sample_38_macrophages_type_2; Homo sapiens; Bisulfite-Seq
SRX6890809	Breast Cell Line	0.692	51.0	79793	2515.5	1123	1224.4	2222	408088.1	0.985	GSM4090885: sample_39_mammary_epith_cells; Homo sapiens; Bisulfite-Seq
SRX6890810	Breast Cell Line	0.684	48.5	90502	1271.5	2127	1038.4	4805	29005.7	0.985	GSM4090886: sample_40_mammary_epith_cells; Homo sapiens; Bisulfite-Seq
SRX6890811	Breast Cell Line	0.710	53.5	97593	1127.5	1405	1217.9	4465	17054.4	0.987	GSM4090887: sample_41_mammary_epith_cells; Homo sapiens; Bisulfite-Seq
SRX6890812	Blood	0.755	24.2	78639	842.0	1351	1089.0	3688	9966.9	0.986	GSM4090888: sample_42_monocytes; Homo sapiens; Bisulfite-Seq
SRX6890813	Blood	0.762	51.2	83233	913.5	1593	1088.0	4452	11322.2	0.987	GSM4090889: sample_43_monocytes; Homo sapiens; Bisulfite-Seq
SRX6890814	Blood	0.763	57.3	81760	943.6	1641	1055.2	4209	13825.8	0.988	GSM4090890: sample_44_monocytes; Homo sapiens; Bisulfite-Seq
SRX6890815	Blood	0.773	27.5	74149	877.3	919	868.9	3858	13202.6	0.989	GSM4090891: sample_45_monocytes; Homo sapiens; Bisulfite-Seq
SRX6890816	Brain	0.764	51.8	75775	1466.4	2699	938.3	4353	25109.8	0.984	GSM4090892: sample_46_glial_cells; Homo sapiens; Bisulfite-Seq
SRX6890819	Brain	0.788	46.0	76798	1456.7	2151	942.1	4398	24636.4	0.985	GSM4090895: sample_49_glial_cells; Homo sapiens; Bisulfite-Seq
SRX6890820	Liver	0.740	19.5	49533	1180.5	1715	901.0	2976	24711.2	0.987	GSM4090896: sample_5_liver; Homo sapiens; Bisulfite-Seq
SRX6890821	Brain	0.796	35.0	77368	1620.4	6620	909.7	6431	21772.0	0.942	GSM4090897: sample_50a_neurons; Homo sapiens; Bisulfite-Seq
SRX6890822	Brain	0.806	57.3	69628	1657.6	8691	966.8	5894	22565.0	0.928	GSM4090898: sample_50b_neurons; Homo sapiens; Bisulfite-Seq
SRX6890823	Brain	0.782	28.0	75157	1696.6	8769	948.8	4196	64086.0	0.948	GSM4090899: sample_51a_neurons; Homo sapiens; Bisulfite-Seq
SRX6890828	Blood	0.747	25.3	66103	951.2	1732	973.0	3203	11741.0	0.985	GSM4090904: sample_58_PBL; Homo sapiens; Bisulfite-Seq
SRX6890829	Blood	0.746	42.2	68541	981.9	2538	960.1	3645	12231.7	0.987	GSM4090905: sample_59_PBL; Homo sapiens; Bisulfite-Seq
SRX6890830	Placenta	0.619	33.8	58899	11879.4	9048	1090.7	2675	391110.3	0.983	GSM4090906: sample_62_placenta; Homo sapiens; Bisulfite-Seq
SRX6890831	Placenta	0.575	42.5	81153	11018.1	2106	972.5	4711	215483.2	0.988	GSM4090907: sample_63_cytotrophoblast; Homo sapiens; Bisulfite-Seq
SRX6890832	Lymph Node	0.748	40.9	51638	1188.2	4220	996.5	2481	14681.6	0.987	GSM4090908: sample_64_lymph_node; Homo sapiens; Bisulfite-Seq
SRX6890834	Blood	0.744	43.6	57301	997.9	1635	1028.2	2728	11189.3	0.988	GSM4090910: sample_69_T_cells; Homo sapiens; Bisulfite-Seq
SRX6890835	Blood	0.783	22.0	55804	964.6	754	893.3	3619	9195.4	0.985	GSM4090911: sample_71_T_cells; Homo sapiens; Bisulfite-Seq
SRX6890836	Blood	0.752	18.3	46299	1092.3	982	1073.2	2621	10678.7	0.985	GSM4090912: sample_72_T_cells; Homo sapiens; Bisulfite-Seq
SRX6890837	Blood	0.755	33.1	53574	993.0	2225	1036.1	2958	10797.8	0.983	GSM4090913: sample_75_T_cells; Homo sapiens; Bisulfite-Seq
SRX6890838	Blood	0.784	23.1	61515	975.3	1395	1018.6	3760	11236.0	0.988	GSM4090914: sample_77_T_cells; Homo sapiens; Bisulfite-Seq
SRX6890840	Blood	0.748	42.1	52844	1016.1	3052	975.7	2340	10998.0	0.945	GSM4090916: sample_79_T_cells; Homo sapiens; Bisulfite-Seq
SRX6890841	Blood	0.793	42.9	64483	1009.7	2475	977.9	3821	12541.4	0.989	GSM4090917: sample_7a_B_cells; Homo sapiens; Bisulfite-Seq
SRX6890842	Blood	0.784	43.9	62110	994.8	3849	1013.4	3513	11519.0	0.947	GSM4090918: sample_7b_B_cells; Homo sapiens; Bisulfite-Seq
SRX6890843	Blood	0.773	63.0	69803	963.0	2237	949.5	4353	11104.0	0.978	GSM4090919: sample_8_B_cells; Homo sapiens; Bisulfite-Seq
SRX6890844	Blood	0.764	41.6	53406	1073.2	4472	1034.3	2744	12299.3	0.947	GSM4090920: sample_80_T_cells; Homo sapiens; Bisulfite-Seq
SRX6890845	Blood	0.720	39.8	51937	1064.6	1057	929.8	2087	11562.2	0.987	GSM4090921: sample_81_T_cells; Homo sapiens; Bisulfite-Seq
SRX6890846	Blood	0.793	47.7	63429	1050.8	1746	1030.4	4089	14847.5	0.988	GSM4090922: sample_82_T_cells_CD4; Homo sapiens; Bisulfite-Seq
SRX6890847	Blood	0.789	48.9	63354	1025.1	1459	1041.2	3803	13366.8	0.986	GSM4090923: sample_83_T_cells_CD4; Homo sapiens; Bisulfite-Seq
SRX6890848	Blood	0.737	38.5	54358	1001.3	932	913.1	2456	11188.3	0.987	GSM4090924: sample_84_T_cells_CD4; Homo sapiens; Bisulfite-Seq
SRX6890849	Blood	0.750	46.5	57230	1005.4	1410	1050.8	2835	12083.1	0.987	GSM4090925: sample_85_T_cells_CD4; Homo sapiens; Bisulfite-Seq
SRX6890850	Blood	0.715	27.6	46045	1188.0	964	896.0	1813	12353.2	0.987	GSM4090926: sample_86_T_cells_CD8; Homo sapiens; Bisulfite-Seq
SRX6890851	Blood	0.748	26.6	52527	1022.1	1591	1014.8	2827	10942.7	0.988	GSM4090927: sample_87_T_cells_CD8; Homo sapiens; Bisulfite-Seq
SRX6890852	Lymph Node	0.558	44.8	218753	3533.3	6254	1130.0	3082	478259.4	0.989	GSM4090928: sample_88_DLBCL; Homo sapiens; Bisulfite-Seq
SRX6890853	Lymph Node	0.538	41.0	80356	11773.3	15732	1135.5	4587	355359.3	0.988	GSM4090929: sample_89_DLBCL; Homo sapiens; Bisulfite-Seq
SRX6890854	Lymph Node	0.514	41.9	77115	5134.2	7431	1214.7	1205	1192505.6	0.989	GSM4090930: sample_90_FL; Homo sapiens; Bisulfite-Seq
SRX6890855	Brain	0.701	45.4	60074	1508.4	8545	977.5	4418	96410.2	0.985	GSM4090931: sample_91_GBM; Homo sapiens; Bisulfite-Seq
SRX6890856	Brain	0.676	45.7	75083	5773.4	5046	1042.3	2449	301693.5	0.989	GSM4090932: sample_92_GBM; Homo sapiens; Bisulfite-Seq
SRX6890857	Brain	0.686	22.5	75634	4455.1	2147	1131.8	2219	306195.6	0.985	GSM4090933: sample_94_GBM; Homo sapiens; Bisulfite-Seq
SRX6890858	Brain	0.615	53.5	88207	5808.7	2160	1048.1	3783	231767.9	0.985	GSM4090934: sample_95_GBM; Homo sapiens; Bisulfite-Seq
SRX6890859	Brain	0.743	44.4	60090	1314.8	7563	1025.0	2916	20865.1	0.981	GSM4090935: sample_96_GBM; Homo sapiens; Bisulfite-Seq
SRX6890860	Bone Marrow	0.562	35.8	24558	31930.9	76138	1549.7	2294	734103.0	0.970	GSM4090936: sample_97_myeloma; Homo sapiens; Bisulfite-Seq
SRX6890861	Bone Marrow	0.474	36.6	113536	10992.4	8469	1095.4	4255	408986.9	0.945	GSM4090937: sample_98_myeloma; Homo sapiens; Bisulfite-Seq
SRX6890862	Bone Marrow	0.355	48.7	82721	19772.5	23947	1570.4	5119	364982.2	0.989	GSM4090938: sample_99_myeloma; Homo sapiens; Bisulfite-Seq
SRX6890863	Blood	0.787	45.6	68839	962.0	2055	1000.2	3990	12317.5	0.989	GSM4090939: sample_9a_B_cells; Homo sapiens; Bisulfite-Seq
SRX6890864	Blood	0.786	42.2	67402	984.7	5882	1032.3	2788	13250.0	0.925	GSM4090940: sample_9b_B_cells; Homo sapiens; Bisulfite-Seq
SRX7904327	Blood	0.789	27.0	79071	902.9	1176	1033.3	3741	15203.9	0.990	GSM4409408: sample_103_monocytes; Homo sapiens; Bisulfite-Seq
SRX7904328	Bone Marrow	0.623	32.6	45043	1228.1	23373	1351.3	1348	985332.9	0.990	GSM4409409: sample_104_myeloma; Homo sapiens; Bisulfite-Seq
SRX7904329	Brain	0.791	33.3	65792	972.1	2195	992.6	3272	9569.0	0.990	GSM4409410: sample_105_B_cells; Homo sapiens; Bisulfite-Seq
SRX7904330	Blood	0.688	40.1	81491	2736.4	4110	998.7	2704	262589.9	0.987	GSM4409411: sample_106_GBM; Homo sapiens; Bisulfite-Seq
SRX7904331	Blood	0.802	27.5	80922	898.2	794	876.5	4307	13329.2	0.990	GSM4409412: sample_107_monocytes; Homo sapiens; Bisulfite-Seq
SRX7904332	Blood	0.797	28.7	80838	902.3	1284	1033.6	3806	14990.7	0.990	GSM4409413: sample_108_monocytes; Homo sapiens; Bisulfite-Seq
SRX7904333	Placenta, Maternal	0.610	48.6	72983	11820.7	5009	1008.1	4037	254522.5	0.962	GSM4409414: sample_109_cytotrophoblast_mat; Homo sapiens; Bisulfite-Seq
SRX7904334	Placenta, Maternal	0.501	34.1	55843	15847.3	5943	987.7	3110	439132.4	0.974	GSM4409415: sample_110_extravillous_trophoblast_mat; Homo sapiens; Bisulfite-Seq

Methods

All analysis was done using a bisulfite sequnecing data analysis pipeline DNMTools developed in the Smith lab at USC.

Mapping reads from bisulfite sequencing: Bisulfite treated reads are mapped to the genomes with the abismal program. Input reads are filtered by their quality, and adapter sequences in the 3' end of reads are trimmed. This is done with cutadapt. Uniquely mapped reads with mismatches/indels below given threshold are retained. For pair-end reads, if the two mates overlap, the overlapping part of the mate with lower quality is discarded. After mapping, we use the format command in dnmtools to merge mates for paired-end reads. We use the dnmtools uniq command to randomly select one from multiple reads mapped exactly to the same location. Without random oligos as UMIs, this is our best indication of PCR duplicates.

Estimating methylation levels: After reads are mapped and filtered, the dnmtools counts command is used to obtain read coverage and estimate methylation levels at individual cytosine sites. We count the number of methylated reads (those containing a C) and the number of unmethylated reads (those containing a T) at each nucleotide in a mapped read that corresponds to a cytosine in the reference genome. The methylation level of that cytosine is estimated as the ratio of methylated to total reads covering that cytosine. For cytosines in the symmetric CpG sequence context, reads from the both strands are collapsed to give a single estimate. Very rarely do the levels differ between strands (typically only if there has been a substitution, as in a somatic mutation), and this approach gives a better estimate.

Bisulfite conversion rate: The bisulfite conversion rate for an experiment is estimated with the dnmtools bsrate command, which computes the fraction of successfully converted nucleotides in reads (those read out as Ts) among all nucleotides in the reads mapped that map over cytosines in the reference genome. This is done either using a spike-in (e.g., lambda), the mitochondrial DNA, or the nuclear genome. In the latter case, only non-CpG sites are used. While this latter approach can be impacted by non-CpG cytosine methylation, in practice it never amounts to much.

Identifying hypomethylated regions (HMRs): In most mammalian cells, the majority of the genome has high methylation, and regions of low methylation are typically the interesting features. (This seems to be true for essentially all healthy differentiated cell types, but not cells of very early embryogenesis, various germ cells and precursors, and placental lineage cells.) These are valleys of low methylation are called hypomethylated regions (HMR) for historical reasons. To identify the HMRs, we use the dnmtools hmr command, which uses a statistical model that accounts for both the methylation level fluctations and the varying amounts of data available at each CpG site.

Partially methylated domains: Partially methylated domains are large genomic regions showing partial methylation observed in immortalized cell lines and cancerous cells. The pmd program is used to identify PMDs.

Allele-specific methylation: Allele-Specific methylated regions refers to regions where the parental allele is differentially methylated compared to the maternal allele. The program allelic is used to compute allele-specific methylation score can be computed for each CpG site by testing the linkage between methylation status of adjacent reads, and the program amrfinder is used to identify regions with allele-specific methylation.

For more detailed description of the methods of each step, please refer to the DNMTools documentation.