Affy Archive Affy GNF1H Track Settings
 
Alignments of Affymetrix Consensus/Exemplars from GNF1H

Track collection: Affymetrix Archive

+  Description
+  All tracks in this collection (6)

Display mode:      Duplicate track

Alignment Gap/Insertion Display Options Help on display options
Draw double horizontal lines when both genome and query have an insertion
Draw a vertical purple line for an insertion at the beginning or end of the
query, orange for insertion in the middle of the query


Display data as a density graph:

Display data as a rearrangement graph:
Data schema/format description and download
Assembly: Human Feb. 2009 (GRCh37/hg19)
Data last updated at UCSC: 2009-09-30

Description

This track shows the location of the sequences used for the selection of probes on the Affymetrix GNF1H chips. This contains 11406 predicted genes that do not overlap with the Affy U133A chip.

Methods

The sequences were mapped to the genome using blat followed by pslReps with the parameters: 

-minCover=0.3 -minAli=0.95 -nearTop=0.005

Credits

Thanks to the Genomics Institute of the Novartis Research Foundation (GNF) for the data underlying this track.

References

Su AI, Wiltshire T, Batalov S, Lapp H, Ching KA, Block D, Zhang J, Soden R, Hayakawa M, Kreiman G et al. A gene atlas of the mouse and human protein-encoding transcriptomes. Proc Natl Acad Sci U S A. 2004 Apr 20;101(16):6062-7. PMID: 15075390; PMC: PMC395923