Assay Summary H3K36me3 Summary Track Settings
 
Roadmap Epigenome H3K36me3 Summary for 131 sample type(s)

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     CM H3K36me3 32  Colonic Mucosa H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2745 Pcnt=55 DonorID:32)    Data format 
     SM H3K36me3 62  Skeletal Muscle H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2021 Pcnt=30 DonorID:62)    Data format 
     ESWA7 H3K36me3 10  ES-WA7 Cell Line H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1545 Pcnt=13 Library:Solexa-12610)    Data format 
     MCD34 H3K36me3 36  Mobilized CD34 Primary Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1295 Pcnt=8 DonorID:RO01536)    Data format 
     PI H3K36me3 27  Pancreatic Islets H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.27 Pcnt=49 DonorID:pancreaticisletsnormal_3/27/09)    Data format 
     SSM H3K36me3 28  Stomach Smooth Muscle H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2366 Pcnt=40 DonorID:28)    Data format 
     RSM H3K36me3 30  Rectal Smooth Muscle H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1552 Pcnt=15 DonorID:30)    Data format 
     CD19 H3K36me3 1  CD19 Primary Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3103 Pcnt=66 DonorID:CD19_8/1/08)    Data format 
     CD3 H3K36me3 04  CD3 Primary Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4455 Pcnt=92 DonorID:CD3_39804)    Data format 
     iPS18c H3K36me3 08  iPS 18c H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3174 Pcnt=68 Library:Solexa-19808)    Data format 
     CD34 H3K36me3 61  CD34 Primary Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3891 Pcnt=87 DonorID:CD34_39661)    Data format 
     MCD34 H3K36me3 80  Mobilized_CD34_Primary_Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1771 Pcnt=23 DonorID:RO01480)    Data format 
     CD34 H3K36me3 11  CD34 Primary Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3251 Pcnt=74 DonorID:CD34_39811)    Data format 
     MCD34 H3K36me3 28  Mobilized_CD34_Primary_Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4509 Pcnt=96 DonorID:RO01508)    Data format 
     FH H3K36me3 27  Fetal Heart H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.107 Pcnt=4 DonorID:H-22727)    Data format 
     SM H3K36me3 19  Skeletal Muscle H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2706 Pcnt=51 DonorID:19)    Data format 
     FK H3K36me3 76  Fetal Kidney H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1113 Pcnt=6 DonorID:H-22676)    Data format 
     ESI3 H3K36me3 93  ES-I3 Cell Line H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2333 Pcnt=38 Library:Solexa-16493)    Data format 
     FB H3K36me3 10  Fetal Brain H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0753 Pcnt=2 DonorID:H-22510)    Data format 
     AN H3K36me3 7  Adipose Nuclei H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3075 Pcnt=64 DonorID:7)    Data format 
     CD19 H3K36me3 29  CD19 Primary Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3741 Pcnt=83 DonorID:CD19_12/29/08)    Data format 
     MS H3K36me3 2  Muscle Satellite Cultured Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1966 Pcnt=28 DonorID:NA)    Data format 
     H1 H3K36me3 24  H1 H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1645 Pcnt=19 DonorID:Solexa-12524)    Data format 
     MS H3K36me3 1  Muscle Satellite Cultured Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1615 Pcnt=17 DonorID:NA)    Data format 
     CD34 H3K36me3 20  CD34 Cultured Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3809 Pcnt=85 DonorID:culturedCD34_2/20/09)    Data format 
     RM H3K36me3 31  Rectal Mucosa H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1942 Pcnt=26 DonorID:31)    Data format 
     CD3 H3K36me3 61  CD3 Primary Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2994 Pcnt=62 DonorID:CD3_39661)    Data format 
     AL H3K36me3 5.0  Adult Liver H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2738 Pcnt=53 DonorID:5.0)    Data format 
     MS H3K36me3 3  Muscle Satellite Cultured Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1494 Pcnt=9 DonorID:NA)    Data format 
     ADMSC H3K36me3 1  Adipose Derived Mesenchymal Stem Cell Cultured Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2387 Pcnt=42 DonorID:1)    Data format 
     AK H3K36me3 27  Adult Kidney H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1515 Pcnt=11 DonorID:27)    Data format 
     RM H3K36me3 29  Rectal Mucosa H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2316 Pcnt=36 DonorID:29)    Data format 
     iPS20b H3K36me3 63  iPS 20b H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2405 Pcnt=43 Library:Solexa-20763)    Data format 
     FL H3K36me3 27  Fetal Lung H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1924 Pcnt=25 DonorID:H-22727)    Data format 
     iPS15b H3K36me3 49  iPS 15b H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2221 Pcnt=32 Library:Solexa-20749)    Data format 
     ESI3 H3K36me3 81  ES-I3 Cell Line H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2282 Pcnt=34 Library:Solexa-15381)    Data format 
     H1 H3K36me3 61  H1 H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0 Pcnt=NA Library:Solexa-14961)    Data format 
     Treg H3K36me3 20  Treg Primary Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4144 Pcnt=89 DonorID:20)    Data format 
     AL H3K36me3 3.0  Adult Liver H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2812 Pcnt=57 DonorID:3.0)    Data format 
     BMDMSC H3K36me3 57  Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3677 Pcnt=81 DonorID:57)    Data format 
     SM H3K36me3 63  Skeletal Muscle H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1734 Pcnt=21 DonorID:63)    Data format 
     DM H3K36me3 61  Duodenum Mucosa H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2461 Pcnt=47 DonorID:61)    Data format 
     AN H3K36me3 92  Adipose Nuclei H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.3256 Pcnt=65)    Data format 
     AN H3K36me3 93  Adipose Nuclei H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.2924 Pcnt=54)    Data format 
     AN H3K36me3 94  Adipose Nuclei H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.3287 Pcnt=69)    Data format 
     AN H3K36me3 95  Adipose Nuclei H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.4951 Pcnt=100)    Data format 
     AL H3K36me3 4  Adult Liver H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.4527 Pcnt=96)    Data format 
     BMDMSC H3K36me3 58  Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.2855 Pcnt=50)    Data format 
     BMDMSC H3K36me3 59  Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.2426 Pcnt=42)    Data format 
     BMDMSC H3K36me3 60  Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.194 Pcnt=35)    Data format 
     BAC H3K36me3 12  Brain Anterior Caudate H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.1756 Pcnt=23)    Data format 
     BCG H3K36me3 12  Brain Cingulate Gyrus H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.1696 Pcnt=19)    Data format 
     BHM H3K36me3 12  Brain Hippocampus Middle H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.1637 Pcnt=15)    Data format 
     BITL H3K36me3 12  Brain Inferior Temporal Lobe H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.1894 Pcnt=31)    Data format 
     BMFL H3K36me3 12  Brain Mid Frontal Lobe H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.1489 Pcnt=12)    Data format 
     BSN H3K36me3 12  Brain Substantia Nigra H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.1426 Pcnt=8)    Data format 
     CD34 H3K36me3 23  CD34 Cultured Cells H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.3843 Pcnt=92)    Data format 
     CfBMDMSC H3K36me3 57  Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.3624 Pcnt=88)    Data format 
     CfBMDMSC H3K36me3 59  Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.3415 Pcnt=77)    Data format 
     CfBMDMSC H3K36me3 60  Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.3514 Pcnt=85)    Data format 
     FL H3K36me3 84  Fetal Lung H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.1892 Pcnt=27)    Data format 
     HUES48 H3K36me3 e3  HUES48 H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.3122 Pcnt=58)    Data format 
     HUES64 H3K36me3 e3  HUES64 H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.3406 Pcnt=73)    Data format 
     HUES6 H3K36me3  HUES6 H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.3505 Pcnt=81)    Data format 
     HUES6 H3K36me3  HUES6 H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.3184 Pcnt=62)    Data format 
     MCD34 H3K36me3 RO01549  MCD34 H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad    Data format 
     MCD34 H3K36me3 RO01562  MCD34 H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad    Data format 
     MCD34 H3K36me3 49  Mobilized CD34 Primary Cells H3K36me3 Signal from REMC/Broad (HOTSPOT_SCORE=0.4892 Pcnt=86)    Data format 
     MCD34 H3K36me3 62  Mobilized CD34 Primary Cells H3K36me3 Signal from REMC/Broad (HOTSPOT_SCORE=0.4961 Pcnt=100)    Data format 
     MSCDACC H3K36me3 93  Mesenchymal Stem Cell Derived Adipocyte Cultured Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.2758 Pcnt=65)    Data format 
     HUES64 H3K36me3 Row-1721  HUES64 H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.3344 Pcnt=84)    Data format 
     ADMSCCC H3K36me3 93  Adipose Derived Mesenchymal Stem Cell Cultured Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.3083 Pcnt=73)    Data format 
     BAG H3K36me3 112  Brain Angular Gyrus H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.1508 Pcnt=22)    Data format 
     HUES48 H3K36me3 Row-1715  HUES48 H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.2846 Pcnt=69)    Data format 
     CD15 H3K36me3 23  CD15 Primary Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.464 Pcnt=96)    Data format 
     MSCDACC H3K36me3 92  Mesenchymal Stem Cell Derived Adipocyte Cultured Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.3841 Pcnt=88)    Data format 
     ADMSCCC H3K36me3 92  Adipose Derived Mesenchymal Stem Cell Cultured Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.446 Pcnt=94)    Data format 
     CfBMDMSCCC H3K36me3 58  Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.3196 Pcnt=76)    Data format 
     BAC H3K36me3 149  Brain Anterior Caudate H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.2294 Pcnt=53)    Data format 
     DSM H3K36me3 160  Duodenum Smooth Muscle H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.1696 Pcnt=33)    Data format 
     iPS20b H3K36me3 355  iPS-20b H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.2957 Pcnt=71)    Data format 
     MCD34 H3K36me3 RO_01536  Mobilized CD34 Primary Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.4966 Pcnt=98)    Data format 
     CD4+CD25- H3K36me3 62  CD4+ CD25- Th Primary Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.334 Pcnt=82)    Data format 
     CD8N H3K36me3 100  CD8 Naive Primary Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.1431 Pcnt=14)    Data format 
     CD8M H3K36me3 100  CD8 Memory Primary Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.1022 Pcnt=8)    Data format 
     SSM H3K36me3 161  Stomach Smooth Muscle H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.2117 Pcnt=45)    Data format 
     CD4+CD25- H3K36me3 62  CD4+ CD25- IL17- PMA-Ionomycin stimulated MACS purified Th Primary Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.2529 Pcnt=61)    Data format 
     CD4+CD25- H3K36me3 62  CD4+ CD25- CD45RO+ Memory Primary Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.1285 Pcnt=10)    Data format 
     CD8N H3K36me3 101  CD8 Naive Primary Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.1504 Pcnt=18)    Data format 
     hDCECC H3K36me3 263  hESC Derived CD184+ Endoderm Cultured Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.3304 Pcnt=80)    Data format 
     CD4N H3K36me3 101  CD4 Naive Primary Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.161 Pcnt=27)    Data format 
     CD4+CD25- H3K36me3 62  CD4+ CD25- CD45RA+ Naive Primary Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.1938 Pcnt=41)    Data format 
     CD4M H3K36me3 101  CD4 Memory Primary Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0641 Pcnt=6)    Data format 
     CD4N H3K36me3 100  CD4 Naive Primary Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.146 Pcnt=16)    Data format 
     SM H3K36me3 157  Stomach Mucosa H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0598 Pcnt=4)    Data format 
     CD4+CD25- H3K36me3 62  CD4+ CD25+ CD127- Treg Primary Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.2835 Pcnt=67)    Data format 
     CD8M H3K36me3 101  CD8 Memory Primary Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.1669 Pcnt=31)    Data format 
     BAG H3K36me3 149  Brain Angular Gyrus H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.1714 Pcnt=35)    Data format 
     CD4M H3K36me3 100  CD4 Memory Primary Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.1505 Pcnt=20)    Data format 
     CSM H3K36me3 83  Colon Smooth Muscle H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.183 Pcnt=39)    Data format 
     CD4+CD25- H3K36me3 62  CD4+ CD25int CD127+ Tmem Primary Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.1659 Pcnt=29)    Data format 
     BITL H3K36me3 149  Brain Inferior Temporal Lobe H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.2136 Pcnt=47)    Data format 
     AK H3K36me3 153  Adult Kidney H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.16 Pcnt=24)    Data format 
     BMFL H3K36me3 149  Brain Mid Frontal Lobe H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.1774 Pcnt=37)    Data format 
     BHM H3K36me3 149  Brain Hippocampus Middle H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.2421 Pcnt=55)    Data format 
     iPS18a H3K36me3 347  iPS-18a H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.2197 Pcnt=51)    Data format 
     BCG H3K36me3 49 15  BI Brain Cingulate Gyrus Histone H3K36me3 Donor 149 Library DNA_Lib 615 EA Release 6    Data format 
     BHM H3K36me3 50 82  BI Brain Hippocampus Middle Histone H3K36me3 Donor 150 Library DNA_Lib 982 EA Release 6    Data format 
     BSN H3K36me3 49 54  BI Brain Substantia Nigra Histone H3K36me3 Donor 149 Library DNA_Lib 554 EA Release 6    Data format 
     CCIPsT H3K36me3 62 39  BI CD4+ CD25- IL17+ PMA-Ionomcyin stimulated Th17 Primary Cells Histone H3K36me3 Donor 62 Library DNA_Lib 739 EA Release 6    Data format 
     CM H3K36me3 55 65  BI Colonic Mucosa Histone H3K36me3 Donor 155 Library DNA_Lib 365 EA Release 6    Data format 
     CSM H3K36me3 56 28  BI Colon Smooth Muscle Histone H3K36me3 Donor 156 Library DNA_Lib 928 EA Release 6    Data format 
     DM H3K36me3 59 75  BI Duodenum Mucosa Histone H3K36me3 Donor 159 Library DNA_Lib 375 EA Release 6    Data format 
     DSM H3K36me3 74 87  BI Duodenum Smooth Muscle Histone H3K36me3 Donor 174 REMC 28 Library DNA_Lib 987 EA Release 6    Data format 
     H1 H3K36me3 20  H1 Cell Line H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3294 Pcnt=75 Library:LL220)    Data format 
     IMR90 H3K36me3 25  IMR90 Cell Line H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4615 Pcnt=98 Library:LL225)    Data format 
     H1 H3K36me3 70  H1 Cell Line H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2825 Pcnt=58 Library:SAK70)    Data format 
     IMR90 H3K36me3 67  IMR90 Cell Line H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4485 Pcnt=94 Library:YL67)    Data format 
     H9 H3K36me3 02  H9 Cell Line H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3335 Pcnt=77 Library:SK102)    Data format 
     H1 H3K36me3 60  H1 Cell Line H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4284 Pcnt=91 Library:LL160)    Data format 
     H9 H3K36me3 78  H9 H3K36me3 Signal from REMC/UCSD (Hotspot_Score=0.2786 Pcnt=46)    Data format 
     iD6.9 H3K36me3 00  iPS-DF-6.9 H3K36me3 Signal from REMC/UCSD (HOTSPOT_SCORE=0.156 Pcnt=43)    Data format 
     H1-BMP4 H3K36me3 AK137  H1-BMP4 H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSD (HOTSPOT_SCORE=0.01 Pcnt=2)    Data format 
     iPS_DF_19.11 H3K36me3 SK472  iPS_DF_19.11 H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSD (HOTSPOT_SCORE=0.26 Pcnt=63)    Data format 
     iPS_DF_6.9 H3K36me3 SK468  iPS_DF_6.9 H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSD (HOTSPOT_SCORE=0.25 Pcnt=59)    Data format 
     H1-BMP4 H3K36me3 LH3  H1-BMP4 H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSD (HOTSPOT_SCORE=0.25 Pcnt=59)    Data format 
     H1-BMP4 H3K36me3 LH7  H1-BMP4 H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSD (HOTSPOT_SCORE=0.39 Pcnt=90)    Data format 
     H1DMSC H3K36me3 SK460  H1DMSC H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSD (HOTSPOT_SCORE=0.32 Pcnt=78)    Data format 
     H1DMSC H3K36me3 SK464  H1DMSC H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSD (HOTSPOT_SCORE=0.5 Pcnt=100)    Data format 
     HDNP H3K36me3 02  UCSD H1 Derived Neuronal Progenitor Cultured Cells Histone H3K36me3 Library AK202 EA Release 6    Data format 
     HDNP H3K36me3 41  UCSD H1 Derived Neuronal Progenitor Cultured Cells Histone H3K36me3 Library AK241 EA Release 6    Data format 
     H1 H3K36me3 A  H1 Cell Line H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.245 Pcnt=45 DonorID:NA)    Data format 
     H1 H3K36me3 B  H1 Cell Line H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.3604 Pcnt=79 DonorID:NA)    Data format 
     PBM H3K36me3 10 24  Peripheral_Blood_Mononuclear_Primary_Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.4862 Pcnt=100 DonorID:TC010)    Data format 
     BMC H3K36me3 80  Breast_Myoepithelial_Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.324 Pcnt=72 DonorID:RM080)    Data format 
     BMC H3K36me3 66  Breast_Myoepithelial_Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.2882 Pcnt=60 DonorID:RM066)    Data format 
     CD4N H3K36me3 01  CD4_Naive_Primary_Cells Cell Line H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.3205 Pcnt=70 DonorID:TC001)    Data format 
     BLEC H3K36me3 80  Breast Luminal Epithelial Cells H3K36me3 Signal from REMC/UCSF-UBC (Hotspot_Score=0.2208 Pcnt=38)    Data format 
     CD8N H3K36me3 01  CD8 Naive Primary Cells H3K36me3 Signal from REMC/UCSF-UBC (Hotspot_Score=0.1304 Pcnt=4)    Data format 
     BGM H3K36me3 01  Brain Germinal Matrix H3K36me3 Signal from REMC/UCSF-UBC (HOTSPOT_SCORE=0.2288 Pcnt=71)    Data format 
     Bv H3K36me3 35  Breast vHMEC H3K36me3 Signal from REMC/UCSF-UBC (HOTSPOT_SCORE=0.1787 Pcnt=57)    Data format 
     NCD H3K36me3 02  Neurosphere Cultured Cells Cortex Derived H3K36me3 Signal from REMC/UCSF-UBC (HOTSPOT_SCORE=0.1439 Pcnt=29)    Data format 
     NGED H3K36me3 02  Neurosphere Cultured Cells Ganglionic Eminence Derived H3K36me3 Signal from REMC/UCSF-UBC (HOTSPOT_SCORE=0.1362 Pcnt=14)    Data format 
     FB H3K36me3 HuFNSC02  Fetal Brain H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSF-UBC (HOTSPOT_SCORE=0.1328 Pcnt=12)    Data format 
     FB H3K36me3 HuFNSC01  Fetal Brain H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSF-UBC (HOTSPOT_SCORE=0.2154 Pcnt=49)    Data format 
     BGM H3K36me3 02 05  UCSF-UBC-USC Brain Germinal Matrix Histone H3K36me3 Donor HuFGM02 Library A03505 EA Release 6    Data format 
     PFF H3K36me3 01 93  UCSF-UBC-USC Penis Foreskin Fibroblast Primary Cells Histone H3K36me3 Donor skin01 Library A08393 EA Release 6    Data format 
     PFF H3K36me3 02 99  UCSF-UBC-USC Penis Foreskin Fibroblast Primary Cells Histone H3K36me3 Donor skin02 Library A08399 EA Release 6    Data format 
     NCD H3K36me3 01 73  UCSF-UBC-USC Neurosphere Cultured Cells Cortex Derived Histone H3K36me3 Donor HuFNSC01 Library A03273 EA Release 7    Data format 
     NGED H3K36me3 01 79  UCSF-UBC-USC Neurosphere Cultured Cells Ganglionic Eminence Derived Histone H3K36me3 Donor HuFNSC01 Library A03279 EA Release 7    Data format 
     PFK H3K36me3 02 24  UCSF-UBC-USC Penis Foreskin Keratinocyte Primary Cells Histone H3K36me3 Donor skin02 Library A11924 EA Release 7    Data format 
     PFM H3K36me3 01 87  UCSF-UBC-USC Penis Foreskin Melanocyte Primary Cells Histone H3K36me3 Donor skin01 Library A08387 EA Release 7    Data format 
     PFM H3K36me3 02 47  UCSF-UBC-USC Penis Foreskin Melanocyte Primary Cells Histone H3K36me3 Donor skin02 Library A08747 EA Release 7    Data format 
     hDCM H3K36me3 77  BI hESC Derived CD56+ Mesoderm Cultured Cells Histone H3K36me3 Library DNA_Lib 1277 EA Release 8    Data format 
     hDCM H3K36me3 83  BI hESC Derived CD56+ Mesoderm Cultured Cells Histone H3K36me3 Library DNA_Lib 1283 EA Release 8    Data format 
     Aorta H3K36me3 03 30  UCSD Aorta Histone H3K36me3 Donor STL003 Library AY130 EA Release 8    Data format 
     Esophagus H3K36me3 03 81  UCSD Esophagus Histone H3K36me3 Donor STL003 Library AY181 EA Release 8    Data format 
     Gastric H3K36me3 03 85  UCSD Gastric Histone H3K36me3 Donor STL003 Library AY185 EA Release 8    Data format 
     HBDT H3K36me3 67  UCSD H1 BMP4 Derived Trophoblast Cultured Cells Histone H3K36me3 Library AY67 EA Release 8    Data format 
     LV H3K36me3 01 35  UCSD Left Ventricle Histone H3K36me3 Donor STL001 Library AK335 EA Release 8    Data format 
     LV H3K36me3 03 35  UCSD Left Ventricle Histone H3K36me3 Donor STL003 Library AY135 EA Release 8    Data format 
     Pancreas H3K36me3 03 89  UCSD Pancreas Histone H3K36me3 Donor STL003 Library AK189 EA Release 8    Data format 
     SI H3K36me3 01 27  UCSD Small Intestine Histone H3K36me3 Donor STL001 Library AK327 EA Release 8    Data format 
     Spleen H3K36me3 03 93  UCSD Spleen Histone H3K36me3 Donor STL003 Library AY193 EA Release 8    Data format 
     PFF H3K36me3 03 69  UCSF-UBC-USC Penis Foreskin Fibroblast Primary Cells Histone H3K36me3 Donor skin03 Library A15569 EA Release 8    Data format 
     PFK H3K36me3 03 76  UCSF-UBC-USC Penis Foreskin Keratinocyte Primary Cells Histone H3K36me3 Donor skin03 Library A15576 EA Release 8    Data format 
     PFM H3K36me3 03 83  UCSF-UBC-USC Penis Foreskin Melanocyte Primary Cells Histone H3K36me3 Donor skin03 Library A15583 EA Release 8    Data format 
     UCSF4star H3K36me3 73  UCSF-UBC-USC UCSF-4star Cell Line Histone H3K36me3 Library A14673 EA Release 8    Data format 
     HDNP H3K36me3 23  UCSD H1 Derived Neuronal Progenitor Cultured Cells Histone H3K36me3 Library CY23 EA Release 9    Data format 
     Thymus H3K36me3 01 49  UCSD Thymus Histone H3K36me3 Donor STL001 Library AY349 EA Release 9    Data format 
     Ovary H3K36me3 02 45  UCSD Ovary Histone H3K36me3 Donor STL002 Library AY345 EA Release 9    Data format 
     RA H3K36me3 03 17  UCSD Right Atrium Histone H3K36me3 Donor STL003 Library AY317 EA Release 9    Data format 
     RV H3K36me3 03 76  UCSD Right Ventricle Histone H3K36me3 Donor STL003 Library AK276 EA Release 9    Data format 
     Lung H3K36me3 01 64  UCSD Lung Histone H3K36me3 Donor STL001 Library CY164 EA Release 9    Data format 
     RV H3K36me3 01 00  UCSD Right Ventricle Histone H3K36me3 Donor STL001 Library CY100 EA Release 9    Data format 
     AG H3K36me3 02 97  UCSD Adrenal Gland Histone H3K36me3 Donor STL002 Library CY97 EA Release 9    Data format 
     Aorta H3K36me3 02 61  UCSD Aorta Histone H3K36me3 Donor STL002 Library CY161 EA Release 9    Data format 
     Bladder H3K36me3 03 22  UCSD Bladder Histone H3K36me3 Donor STL003 Library CY122 EA Release 9    Data format 
     AL H3K36me3 11 25  UCSD Adult Liver Histone H3K36me3 Donor STL011 Library CY125 EA Release 9    Data format 
     Esophagus H3K36me3 02 77  UCSD Esophagus Histone H3K36me3 Donor STL002 Library CY177 EA Release 9    Data format 
     SI H3K36me3 02 11  UCSD Small Intestine Histone H3K36me3 Donor STL002 Library AY511 EA Release 9    Data format 
     Spleen H3K36me3 02 15  UCSD Spleen Histone H3K36me3 Donor STL002 Library AY515 EA Release 9    Data format 
     Gastric H3K36me3 01 80  UCSD Gastric Histone H3K36me3 Donor STL001 Library CY80 EA Release 9    Data format 
     PM H3K36me3 01 03  UCSD Psoas Muscle Histone H3K36me3 Donor STL001 Library CY103 EA Release 9    Data format 
     Pancreas H3K36me3 02 76  UCSD Pancreas Histone H3K36me3 Donor STL002 Library CY76 EA Release 9    Data format 
     HBDT H3K36me3 59  UCSD H1 BMP4 Derived Trophoblast Cultured Cells Histone H3K36me3 Library AY259 EA Release 9    Data format 
     SC H3K36me3 01 31  UCSD Sigmoid Colon Histone H3K36me3 Donor STL001 Library AK331 EA Release 9    Data format 
     Lung H3K36me3 02 14  UCSD Lung Histone H3K36me3 Donor STL002 Library AY314 EA Release 9    Data format 
     AG H3K36me3 03 87  UCSD Adrenal Gland Histone H3K36me3 Donor STL003 Library AY287 EA Release 9    Data format 
     SC H3K36me3 03 78  UCSD Sigmoid Colon Histone H3K36me3 Donor STL003 Library AY278 EA Release 9    Data format 
     BF H3K36me3 71 44  UCSF-UBC-USC Breast Fibroblast Primary Cells Histone H3K36me3 Donor RM071 Library A21644 EA Release 9    Data format 
     PI H3K36me3 13 73  UCSF-UBC-USC Pancreatic Islets Histone H3K36me3 Donor ZGI 213 Library A22473 EA Release 9    Data format 
     UCSF4* H3K36me3 00  UCSF-UBC-USC UCSF-4* Cell Line Histone H3K36me3 Library A19300 EA Release 9    Data format 
     NGED H3K36me3 04 07  UCSF-UBC-USC Neurosphere Cultured Cells Ganglionic Eminence Derived Histone H3K36me3 Donor HuFNSC04 Library A19307 EA Release 9    Data format 
     PBM H3K36me3 15 30  UCSF-UBC-USC Peripheral Blood Mononuclear Primary Cells Histone H3K36me3 Donor TC015 Library A21630 EA Release 9    Data format 
     PCS H3K36me3 02 14  UCSF-UBC-USC Placenta Chorion Smooth Histone H3K36me3 Donor CTL02 Library A21714 EA Release 9    Data format 
     PA H3K36me3 02 21  UCSF-UBC-USC Placenta Amnion Histone H3K36me3 Donor CTL02 Library A21721 EA Release 9    Data format 
     hDCE H3K36me3 42  BI hESC Derived CD184+ Endoderm Cultured Cells Histone H3K36me3 Library DNA_Lib 842 EA Release 9    Data format 
     HDNP H3K36me3 e3  BI H9 Derived Neuronal Progenitor Cultured Cells Histone H3K36me3 Library Lib:RI:20101012:11--ChIP:MA:20100927:11:hNP (ES H9 derived Nuronal Progenitors):H3K36Me3 EA Release 9    Data format 
     HDN H3K36me3 e3  BI H9 Derived Neuron Cultured Cells Histone H3K36me3 Library Lib:RI:20101012:17--ChIP:MA:20100927:17:hN (ES H9 derived Neurons):H3K36Me3 EA Release 9    Data format 
     CCIPsT H3K36me3 32 15  BI CD4+ CD25- IL17+ PMA-Ionomcyin stimulated Th17 Primary Cells Histone H3K36me3 Donor 332 Library DNA_Lib 2215 EA Release 9    Data format 
     CCCTreg H3K36me3 32 90  BI CD4+ CD25+ CD127- Treg Primary Cells Histone H3K36me3 Donor 332 Library DNA_Lib 2090 EA Release 9    Data format 
     CCCMM H3K36me3 32 97  BI CD4+ CD25- CD45RO+ Memory Primary Cells Histone H3K36me3 Donor 332 Library DNA_Lib 2097 EA Release 9    Data format 
     CCT H3K36me3 32 71  BI CD4+ CD25- Th Primary Cells Histone H3K36me3 Donor 332 Library DNA_Lib 2271 EA Release 9    Data format 
     hDCEcto H3K36me3 08  BI hESC Derived CD56+ Ectoderm Cultured Cells Histone H3K36me3 Library DNA_Lib 1808 EA Release 9    Data format 
     CCCNN H3K36me3 32 09  BI CD4+ CD25- CD45RA+ Naive Primary Cells Histone H3K36me3 Donor 332 Library DNA_Lib 2209 EA Release 9    Data format 
     CCCTmem H3K36me3 32 65  BI CD4+ CD25int CD127+ Tmem Primary Cells Histone H3K36me3 Donor 332 Library DNA_Lib 2265 EA Release 9    Data format 
     CCIPsMpT H3K36me3 32 59  BI CD4+ CD25- IL17- PMA-Ionomycin stimulated MACS purified Th Primary Cells Histone H3K36me3 Donor 332 Library DNA_Lib 2259 EA Release 9    Data format 
     CSM H3K36me3 56 51  BI Colon Smooth Muscle Histone H3K36me3 Donor 156 Library DNA_Lib 1851 EA Release 9    Data format 
     CD19 H3K36me3 79 86  UW CD19 Primary Cells Histone H3K36me3 Donor RO 01679 Library Histone.DS22586 EA Release 9    Data format 
     CD56 H3K36me3 79 95  UW CD56 Primary Cells Histone H3K36me3 Donor RO 01679 Library Histone.DS22595 EA Release 9    Data format 
     FT H3K36me3 44 03  UW Fetal Thymus Histone H3K36me3 Donor H-24644 Library Histone.DS22603 EA Release 9    Data format 
     FIL H3K36me3 95 54  UW Fetal Intestine Large Histone H3K36me3 Donor H-24595 Library Histone.DS22554 EA Release 9    Data format 
     FIS H3K36me3 95 57  UW Fetal Intestine Small Histone H3K36me3 Donor H-24595 Library Histone.DS22557 EA Release 9    Data format 
     FML H3K36me3 44 60  UW Fetal Muscle Leg Histone H3K36me3 Donor H-24644 Library Histone.DS22560 EA Release 9    Data format 
     CD3 H3K36me3 79 63  UW CD3 Primary Cells Histone H3K36me3 Donor RO 01679 Library Histone.DS22563 EA Release 9    Data format 
     CD14 H3K36me3 21 06  UW CD14 Primary Cells Histone H3K36me3 Donor RO 01721 Library Histone.DS22406 EA Release 9    Data format 
     FS H3K36me3 39 00  UW Fetal Stomach Histone H3K36me3 Donor H-24639 Library Histone.DS22600 EA Release 9    Data format 
     CD4 H3K36me3 01 06  UW CD4 Primary Cells Histone H3K36me3 Donor RO 01701 Library Histone.DS22906 EA Release 9    Data format 
     CD8 H3K36me3 01 10  UW CD8 Primary Cells Histone H3K36me3 Donor RO 01701 Library Histone.DS22910 EA Release 9    Data format 
     FP H3K36me3 96 30  UW Fetal Placenta Histone H3K36me3 Donor H-24996 Library Histone.DS23030 EA Release 9    Data format 
     FIL H3K36me3 95 07  UW Fetal Intestine Large Histone H3K36me3 Donor H-24595 Library Histone.DS23307 EA Release 9    Data format 
     FMT H3K36me3 51 37  UW Fetal Muscle Trunk Histone H3K36me3 Donor H-24851 Library Histone.DS23037 EA Release 9    Data format 
     FAG H3K36me3 00 68  UW Fetal Adrenal Gland Histone H3K36me3 Donor H-24800 Library Histone.DS23068 EA Release 9    Data format 
    
Assembly: Human Feb. 2009 (GRCh37/hg19)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

These tracks are genome-wide maps on epigenetic marks surveyed by Roadmap Epigenomics Project. Each track is about one type of epigenetic mark, and contains multiple experiments assayed for that mark type. DNA methylation and histone modification are two types of most important epigenetic marks.

DNA methylation of human DNA mostly happens on cytosine bases of CpG dinucleotides. The methylated DNA usually prevent accessibility of regulatory proteins and hampers transcription, while unmethylated DNA is usually indicative of open chromatin. The MeDIP-Seq and MRE-Seq experiments are usually performed on same sample to identify genome-wide DNA methylation pattern. MeDIP-Seq (methylated DNA immunoprecipitation and sequencing) is a ChIP-based approach utilizing antibody against methylated cytosine. This method enriches methylated DNA and high read count indicates high likelihood of underlying region is methylated. The MRE-Seq (methylation restriction enzyme sequencing) uses methylation-sensitive restriction enzymes to digest DNA, and only cut at unmethylated restriction sites. The cut restriction sites will be detected by sequencing where reads aligned to a restriction site on reference genome means the restriction site is unmethylated.

The MethylC-Seq (MethylC sequencing) uses bisulfite to convert methylated cytosines to thymines before sequencing. The percentage of reads with a T versus a C indicates the percentage methylation at the cytosine. Details can be found in this paper Lister R, et al., Nature. 2009 Nov 19;462(7271):315-22. .

RRBS (Reduced-Representation-Bisulfite-Sequencing) is similar to MethylC-seq except RRBS uses restriction enzyme to fragment the genome into fragments suitably-sized for sequencing. While RRBS produces percent methylation similar to MethylC-seq, it is limited to cytosines that are within restriction fragments of a suitable size and then tend to measure CpG dense regions only. Details can be found in this paper: Meissener, A. et al., Nucleic Acids Res. 2005; 33(18): 5868-5877. .

Histone marks are critical epigenetic components. They are covalent modifications of amino acid residues of histone proteins, which modify protein's biochemical property and affect transcription and chromatin state. The histone marks are measured by ChIP-Seq experiments (chromatin immunoprecipitation followed by sequencing).

Display conventions

Each track can be turned on/off individually. Inside each track, sub-tracks are displayed in same vertical space and are overlayed with transparent colors for contrast. All tracks displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. Sub-tracks sharing same space use same scale.

Methods

Experimental protocols: follow this link for experimental protocols.

Data processing: EDACC carried out data processing and quality assessment. Details are fully explained here . In brief, sequencing reads were aligned with 'Pash' program to derive read density data. The read density data is prepared into 'wiggle' format files with fixed step length of 20 bp. Data in wiggle and other formats have been deposited in NCBI Gene Expression Omnibus database for public access.

Quality control: the HotSpot was one of the methods used to assess quality of ChIP-Seq experiments. The long track name includes a "Hotspot_Score" field indicates the percentage of sequencing reads found inside hotspot regions. The "Pcnt" field shows the percentile of current experiment score in this type of ChIP-Seq experiments (e.g., all H3K4me3 ChIP-Seq experiments). This value is subject to change in next Data Release. The most comprehensive and up-to-date description on QC Metrics used by the consortium can be found here .

Release Notes

The data is combination of Release II, III, IV, V, VI, VII, VIII and IX which were mapped to human reference genome version hg19. The data is production of Roadmap Epigenomics Project.

Please follow the link for Roadmap Epigenomics data access policy

Credits

These data were generated in labs from participating institutions of Roadmap Epigenomics Project.

Useful links