Assay Summary H3K27me3 Summary Track Settings
 
Roadmap Epigenome H3K27me3 Summary for 126 sample type(s)

Track collection: Assay Summary

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     AL H3K27me3 3.0  Adult Liver H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3609 Pcnt=90 DonorID:3.0)    Data format 
     FB H3K27me3 10  Fetal Brain H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0944 Pcnt=15 DonorID:H-22510)    Data format 
     CD34 H3K27me3 20  CD34 Cultured Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3021 Pcnt=79 DonorID:culturedCD34_2/20/09)    Data format 
     CD19 H3K27me3 22  CD19 Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2421 Pcnt=56 DonorID:CD19_12/22/08)    Data format 
     iPS20b H3K27me3 e3  iPS 20b H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2568 Pcnt=62 DonorID:NA)    Data format 
     BMDMSC H3K27me3 57  Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1741 Pcnt=42 DonorID:57)    Data format 
     AL H3K27me3 5.0  Adult Liver H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1637 Pcnt=38 DonorID:5.0)    Data format 
     FH H3K27me3 27  Fetal Heart H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1324 Pcnt=27 DonorID:H-22727)    Data format 
     MCD34 H3K27me3 28  Mobilized_CD34_Primary_Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2825 Pcnt=73 DonorID:RO01508)    Data format 
     DM H3K27me3 61  Duodenum Mucosa H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0622 Pcnt=4 DonorID:61)    Data format 
     CD34 H3K27me3 61  CD34 Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3095 Pcnt=83 DonorID:CD34_39661)    Data format 
     RM H3K27me3 29  Rectal Mucosa H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0651 Pcnt=6 DonorID:29)    Data format 
     RSM H3K27me3 30  Rectal Smooth Muscle H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0781 Pcnt=8 DonorID:30)    Data format 
     CM H3K27me3 32  Colonic Mucosa H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1847 Pcnt=44 DonorID:32)    Data format 
     FL H3K27me3 27  Fetal Lung H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1037 Pcnt=17 DonorID:H-22727)    Data format 
     CD34 H3K27me3 04  CD34 Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.214 Pcnt=46 DonorID:CD34_39804)    Data format 
     ADMSC H3K27me3 1  Adipose Derived Mesenchymal Stem Cell Cultured Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0934 Pcnt=13 DonorID:1)    Data format 
     Treg H3K27me3 20  Treg Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1272 Pcnt=25 DonorID:20)    Data format 
     MS H3K27me3 3  Muscle Satellite Cultured Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.173 Pcnt=40 DonorID:NA)    Data format 
     iPS20b H3K27me3 59  iPS 20b H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2299 Pcnt=52 Library:Solexa-15159)    Data format 
     SSM H3K27me3 28  Stomach Smooth Muscle H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1122 Pcnt=19 DonorID:28)    Data format 
     H1 H3K27me3 23  H1 H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3386 Pcnt=87 Library:Solexa-12523)    Data format 
     H1 H3K27me3 39  H1 H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2783 Pcnt=71 DonorID:Solexa-8039)    Data format 
     iPS18c H3K27me3 91  iPS 18c H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4168 Pcnt=98 Library:Solexa-19791)    Data format 
     ESI3 H3K27me3 80  ES-I3 Cell Line H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3761 Pcnt=92 Library:Solexa-10213/Solexa-15380)    Data format 
     FK H3K27me3 76  Fetal Kidney H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0827 Pcnt=10 DonorID:H-22676)    Data format 
     PI H3K27me3 27  Pancreatic Islets H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2476 Pcnt=60 DonorID:pancreaticisletsnormal_3/27/09)    Data format 
     MS H3K27me3 1  Muscle Satellite Cultured Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1512 Pcnt=33 DonorID:NA)    Data format 
     MS H3K27me3 2  Muscle Satellite Cultured Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.113 Pcnt=21 DonorID:NA)    Data format 
     SM H3K27me3 19  Skeletal Muscle H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1542 Pcnt=35 DonorID:19)    Data format 
     SM H3K27me3 62  Skeletal Muscle H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0918 Pcnt=12 DonorID:62)    Data format 
     CD3 H3K27me3 61  CD3 Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3042 Pcnt=81 DonorID:CD3_39661)    Data format 
     MCD34 H3K27me3 36  Mobilized CD34 Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1353 Pcnt=29 DonorID:RO01536)    Data format 
     ESI3 H3K27me3 78  ES-I3 Cell Line H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2653 Pcnt=63 Library:Solexa-12678)    Data format 
     MCD34 H3K27me3 49  Mobilized_CD34_Primary_Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2998 Pcnt=77 DonorID:RO01549)    Data format 
     ESWA7 H3K27me3 09  ES-WA7 Cell Line H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2923 Pcnt=75 Library:Solexa-12609)    Data format 
     iPS15b H3K27me3 e3  iPS 15b H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2758 Pcnt=67 DonorID:NA)    Data format 
     SM H3K27me3 63  Skeletal Muscle H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1189 Pcnt=23 DonorID:63)    Data format 
     CD19 H3K27me3 26  CD19 Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2152 Pcnt=48 DonorID:CD19_6/26/08)    Data format 
     CD3 H3K27me3 04  CD3 Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2211 Pcnt=50 DonorID:CD3_39804)    Data format 
     RM H3K27me3 31  Rectal Mucosa H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0572 Pcnt=2 DonorID:31)    Data format 
     CD15 H3K27me3 23.0  CD15 Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3763 Pcnt=94 DonorID:23.0)    Data format 
     AN H3K27me3 92  Adipose Nuclei H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.1136 Pcnt=30)    Data format 
     AN H3K27me3 94  Adipose Nuclei H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.1599 Pcnt=55)    Data format 
     AN H3K27me3 95  Adipose Nuclei H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.1503 Pcnt=50)    Data format 
     BMDMSC H3K27me3 58  Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.1976 Pcnt=60)    Data format 
     BMDMSC H3K27me3 59  Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.1422 Pcnt=40)    Data format 
     BMDMSC H3K27me3 60  Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.1304 Pcnt=35)    Data format 
     BAC H3K27me3 12  Brain Anterior Caudate H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.0409 Pcnt=5)    Data format 
     BHM H3K27me3 12  Brain Hippocampus Middle H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.0628 Pcnt=15)    Data format 
     BSN H3K27me3 12  Brain Substantia Nigra H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.0432 Pcnt=10)    Data format 
     CfBMDMSC H3K27me3 57  Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.1991 Pcnt=65)    Data format 
     CfBMDMSC H3K27me3 59  Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.214 Pcnt=75)    Data format 
     HUES48 H3K27me3 e3  HUES48 H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.299 Pcnt=80)    Data format 
     HUES64 H3K27me3 e3  HUES64 H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.4804 Pcnt=100)    Data format 
     HUES6 H3K27me3  HUES6 H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.3435 Pcnt=90)    Data format 
     HUES6 H3K27me3  HUES6 H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.3981 Pcnt=95)    Data format 
     MCD34 H3K27me3 80  Mobilized CD34 Primary Cells H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.1454 Pcnt=45)    Data format 
     MCD34 H3K27me3 RO01480  MCD34 H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad    Data format 
     MCD34 H3K27me3 RO01517  MCD34 H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad    Data format 
     MCD34 H3K27me3 RO01549  MCD34 H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad    Data format 
     MCD34 H3K27me3 RO01562  MCD34 H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad    Data format 
     FL H3K27me3 H22772  Fetal Lung H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad    Data format 
     FL H3K27me3 72  Fetal Lung H3K27me3 Signal from REMC/Broad (HOTSPOT_SCORE=0.2539 Pcnt=55)    Data format 
     MCD34 H3K27me3 17  Mobilized CD34 Primary Cells H3K27me3 Signal from REMC/Broad (HOTSPOT_SCORE=0.3212 Pcnt=100)    Data format 
     MCD34 H3K27me3 49  Mobilized CD34 Primary Cells H3K27me3 Signal from REMC/Broad (HOTSPOT_SCORE=0.2998 Pcnt=77)    Data format 
     MCD34 H3K27me3 62  Mobilized CD34 Primary Cells H3K27me3 Signal from REMC/Broad (HOTSPOT_SCORE=0.2973 Pcnt=73)    Data format 
     MSCDACC H3K27me3 93  Mesenchymal Stem Cell Derived Adipocyte Cultured Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.1245 Pcnt=57)    Data format 
     HUES64 H3K27me3 Row-1722  HUES64 H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.2897 Pcnt=94)    Data format 
     HUES48 H3K27me3 Row-1716  HUES48 H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.276 Pcnt=90)    Data format 
     AN H3K27me3 93  Adipose Nuclei H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.112 Pcnt=49)    Data format 
     BITL H3K27me3 112  Brain Inferior Temporal Lobe H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0987 Pcnt=22)    Data format 
     CfBMDMSCCC H3K27me3 60  Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.1977 Pcnt=73)    Data format 
     CfBMDMSCCC H3K27me3 58  Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.2005 Pcnt=80)    Data format 
     MSCDACC H3K27me3 92  Mesenchymal Stem Cell Derived Adipocyte Cultured Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.2032 Pcnt=82)    Data format 
     ADMSCCC H3K27me3 92  Adipose Derived Mesenchymal Stem Cell Cultured Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.2636 Pcnt=88)    Data format 
     BAC H3K27me3 149  Brain Anterior Caudate H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.1156 Pcnt=53)    Data format 
     BMFL H3K27me3 149  Brain Mid Frontal Lobe H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0964 Pcnt=18)    Data format 
     DSM H3K27me3 160  Duodenum Smooth Muscle H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0363 Pcnt=4)    Data format 
     iPS20b H3K27me3 356  iPS-20b H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.4558 Pcnt=100)    Data format 
     CD4M H3K27me3 101  CD4 Memory Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0756 Pcnt=8)    Data format 
     CD4+CD25- H3K27me3 62  CD4+ CD25- Th Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.1071 Pcnt=37)    Data format 
     CD8N H3K27me3 100  CD8 Naive Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.1038 Pcnt=31)    Data format 
     CD8M H3K27me3 100  CD8 Memory Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0768 Pcnt=10)    Data format 
     CD4+CD25- H3K27me3 62  CD4+ CD25- IL17- PMA-Ionomycin stimulated MACS purified Th Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.198 Pcnt=76)    Data format 
     CD8N H3K27me3 101  CD8 Naive Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.1115 Pcnt=47)    Data format 
     CD4+CD25- H3K27me3 62  CD4+ CD25- CD45RO+ Memory Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0987 Pcnt=22)    Data format 
     CD4+CD25- H3K27me3 62  CD4+ CD25- CD45RA+ Naive Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.1676 Pcnt=69)    Data format 
     CD4N H3K27me3 101  CD4 Naive Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.1056 Pcnt=35)    Data format 
     iPS18a H3K27me3 348  iPS-18a H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.3692 Pcnt=98)    Data format 
     BSN H3K27me3 149  Brain Substantia Nigra H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.1104 Pcnt=43)    Data format 
     CD4+CD25- H3K27me3 62  CD4+ CD25+ CD127- Treg Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.1225 Pcnt=55)    Data format 
     CD4N H3K27me3 100  CD4 Naive Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.1001 Pcnt=29)    Data format 
     MCD34 H3K27me3 RO_01536  Mobilized CD34 Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.2862 Pcnt=92)    Data format 
     CD4+CD25- H3K27me3 62  CD4+ CD25int CD127+ Tmem Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.1399 Pcnt=61)    Data format 
     CD8M H3K27me3 101  CD8 Memory Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.1079 Pcnt=41)    Data format 
     SM H3K27me3 157  Stomach Mucosa H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.111 Pcnt=45)    Data format 
     CSM H3K27me3 83  Colon Smooth Muscle H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0381 Pcnt=6)    Data format 
     hDCECC H3K27me3 246  hESC Derived CD184+ Endoderm Cultured Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.3402 Pcnt=96)    Data format 
     BAG H3K27me3 149  Brain Angular Gyrus H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.1075 Pcnt=39)    Data format 
     BITL H3K27me3 149  Brain Inferior Temporal Lobe H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.1136 Pcnt=51)    Data format 
     CD4M H3K27me3 100  CD4 Memory Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.1046 Pcnt=33)    Data format 
     hDCECC H3K27me3 239  hESC Derived CD184+ Endoderm Cultured Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.2397 Pcnt=84)    Data format 
     BCG H3K27me3 49 20  BI Brain Cingulate Gyrus Histone H3K27me3 Donor 149 Library DNA_Lib 620 EA Release 6    Data format 
     BHM H3K27me3 50 81  BI Brain Hippocampus Middle Histone H3K27me3 Donor 150 Library DNA_Lib 981 EA Release 6    Data format 
     CM H3K27me3 55 64  BI Colonic Mucosa Histone H3K27me3 Donor 155 Library DNA_Lib 364 EA Release 6    Data format 
     DM H3K27me3 59 72  BI Duodenum Mucosa Histone H3K27me3 Donor 159 Library DNA_Lib 372 EA Release 6    Data format 
     DSM H3K27me3 74 89  BI Duodenum Smooth Muscle Histone H3K27me3 Donor 174 REMC 28 Library DNA_Lib 989 EA Release 6    Data format 
     IMR90 H3K27me3 23  IMR90 Cell Line H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.386 Pcnt=96 Library:LL223)    Data format 
     H1 H3K27me3 14  H1 Cell Line H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.497 Pcnt=100 Library:LL314)    Data format 
     H1 H3K27me3 95  H1 Cell Line H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3196 Pcnt=85 Library:YL95)    Data format 
     IMR90 H3K27me3 05  IMR90 Cell Line H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2404 Pcnt=54 Library:SK05)    Data format 
     H1 H3K27me3 41  H1 Cell Line H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3607 Pcnt=88 Library:LL241)    Data format 
     H9 H3K27me3 99  H9 H3K27me3 Signal from REMC/UCSD (Hotspot_Score=0.3339 Pcnt=85)    Data format 
     H9 H3K27me3 42  H9 Cell Line H3K27me3 Signal from REMC/UCSD (HOTSPOT_SCORE=0.0398 Pcnt=9)    Data format 
     iD19.11 H3K27me3 30  iPS-DF-19.11 H3K27me3 Signal from REMC/UCSD (HOTSPOT_SCORE=0.0791 Pcnt=27)    Data format 
     iD6.9 H3K27me3 75  iPS-DF-6.9 H3K27me3 Signal from REMC/UCSD (HOTSPOT_SCORE=0.2096 Pcnt=45)    Data format 
     H1-BMP4 H3K27me3 AK132  H1-BMP4 H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSD (HOTSPOT_SCORE=0.02 Pcnt=2)    Data format 
     H1-BMP4 H3K27me3 AK148  H1-BMP4 H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSD (HOTSPOT_SCORE=0.25 Pcnt=86)    Data format 
     iPS_DF_19.11 H3K27me3 SK435  iPS_DF_19.11 H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSD (HOTSPOT_SCORE=0.08 Pcnt=12)    Data format 
     iPS_DF_6.9 H3K27me3 SK433  iPS_DF_6.9 H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSD (HOTSPOT_SCORE=0.09 Pcnt=16)    Data format 
     H1-BMP4 H3K27me3 SK448  H1-BMP4 H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSD (HOTSPOT_SCORE=0.2 Pcnt=78)    Data format 
     H1-BMP4 H3K27me3 SK450  H1-BMP4 H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSD (HOTSPOT_SCORE=0.1 Pcnt=27)    Data format 
     H1DMSC H3K27me3 SK437  H1DMSC H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSD (HOTSPOT_SCORE=0.1 Pcnt=27)    Data format 
     H1DMSC H3K27me3 SK439  H1DMSC H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSD (HOTSPOT_SCORE=0.15 Pcnt=65)    Data format 
     HDNP H3K27me3 21  UCSD H1 Derived Neuronal Progenitor Cultured Cells Histone H3K27me3 Library AK221 EA Release 6    Data format 
     BMC H3K27me3 66  Breast_Myoepithelial_Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.1583 Pcnt=37 DonorID:RM066)    Data format 
     PBM H3K27me3 10 21  Peripheral_Blood_Mononuclear_Primary_Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.2764 Pcnt=69 DonorID:TC010)    Data format 
     H1 H3K27me3 A  H1 Cell Line H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.2469 Pcnt=58 DonorID:NA)    Data format 
     CD8N H3K27me3 01  CD8_Naive_Primary_Cells Cell Line H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.1489 Pcnt=31 DonorID:TC001)    Data format 
     BMC H3K27me3 80  Breast_Myoepithelial_Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.2704 Pcnt=65 DonorID:RM080)    Data format 
     Bv H3K27me3 35  Breast vHMEC H3K27me3 Signal from REMC/UCSF-UBC (Hotspot_Score=0.21 Pcnt=70)    Data format 
     FB H3K27me3 T  Fetal Brain H3K27me3 Signal from REMC/UCSF-UBC (Hotspot_Score=0.088 Pcnt=25)    Data format 
     PFK H3K27me3 01  Penis Foreskin Keratinocyte Primary Cells H3K27me3 Signal from REMC/UCSF-UBC (Hotspot_Score=0.0676 Pcnt=20)    Data format 
     BGM H3K27me3 01  Brain Germinal Matrix H3K27me3 Signal from REMC/UCSF-UBC (HOTSPOT_SCORE=0.315 Pcnt=91)    Data format 
     BLEC H3K27me3 80  Breast Luminal Epithelial Cells H3K27me3 Signal from REMC/UCSF-UBC (HOTSPOT_SCORE=0.28 Pcnt=64)    Data format 
     NCD H3K27me3 02  Neurosphere Cultured Cells Cortex Derived H3K27me3 Signal from REMC/UCSF-UBC (HOTSPOT_SCORE=0.1144 Pcnt=36)    Data format 
     NGED H3K27me3 02  Neurosphere Cultured Cells Ganglionic Eminence Derived H3K27me3 Signal from REMC/UCSF-UBC (HOTSPOT_SCORE=0.0455 Pcnt=18)    Data format 
     FB H3K27me3 HuFNSC02  Fetal Brain H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSF-UBC (HOTSPOT_SCORE=0.0886 Pcnt=14)    Data format 
     FB H3K27me3 HuFNSC01  Fetal Brain H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSF-UBC (HOTSPOT_SCORE=0.1597 Pcnt=67)    Data format 
     BGM H3K27me3 02 04  UCSF-UBC-USC Brain Germinal Matrix Histone H3K27me3 Donor HuFGM02 Library A03504 EA Release 6    Data format 
     PFF H3K27me3 01 92  UCSF-UBC-USC Penis Foreskin Fibroblast Primary Cells Histone H3K27me3 Donor skin01 Library A08392 EA Release 6    Data format 
     PFF H3K27me3 02 98  UCSF-UBC-USC Penis Foreskin Fibroblast Primary Cells Histone H3K27me3 Donor skin02 Library A08398 EA Release 6    Data format 
     PFK H3K27me3 01 37  UCSF-UBC-USC Penis Foreskin Keratinocyte Primary Cells Histone H3K27me3 Donor skin01 Library A02886 EA Release 6    Data format 
     NCD H3K27me3 01 72  UCSF-UBC-USC Neurosphere Cultured Cells Cortex Derived Histone H3K27me3 Donor HuFNSC01 Library A03272 EA Release 7    Data format 
     NGED H3K27me3 01 78  UCSF-UBC-USC Neurosphere Cultured Cells Ganglionic Eminence Derived Histone H3K27me3 Donor HuFNSC01 Library A03278 EA Release 7    Data format 
     PFK H3K27me3 02 23  UCSF-UBC-USC Penis Foreskin Keratinocyte Primary Cells Histone H3K27me3 Donor skin02 Library A11923 EA Release 7    Data format 
     PFM H3K27me3 01 86  UCSF-UBC-USC Penis Foreskin Melanocyte Primary Cells Histone H3K27me3 Donor skin01 Library A08386 EA Release 7    Data format 
     PFM H3K27me3 02 46  UCSF-UBC-USC Penis Foreskin Melanocyte Primary Cells Histone H3K27me3 Donor skin02 Library A08746 EA Release 7    Data format 
     HBDM H3K27me3 11  UCSD H1 BMP4 Derived Mesendoderm Cultured Cells Histone H3K27me3 Library AK311 EA Release 7    Data format 
     HBDM H3K27me3 14  UCSD H1 BMP4 Derived Mesendoderm Cultured Cells Histone H3K27me3 Library AK314 EA Release 7    Data format 
     AN H3K27me3 7 09  BI Adipose Nuclei Histone H3K27me3 Donor 7 Library DNA_Lib 709 EA Release 8    Data format 
     CCIPsT H3K27me3 62 38  BI CD4+ CD25- IL17+ PMA-Ionomcyin stimulated Th17 Primary Cells Histone H3K27me3 Donor 62 Library DNA_Lib 738 EA Release 8    Data format 
     FB H3K27me3 76 85  BI Fetal Brain Histone H3K27me3 Donor UW H22676 Library DNA_Lib 385 EA Release 8    Data format 
     hDCM H3K27me3 74  BI hESC Derived CD56+ Mesoderm Cultured Cells Histone H3K27me3 Library DNA_Lib 1274 EA Release 8    Data format 
     Aorta H3K27me3 03 29  UCSD Aorta Histone H3K27me3 Donor STL003 Library AY129 EA Release 8    Data format 
     Esophagus H3K27me3 03 25  UCSD Esophagus Histone H3K27me3 Donor STL003 Library AK325 EA Release 8    Data format 
     Gastric H3K27me3 03 40  UCSD Gastric Histone H3K27me3 Donor STL003 Library AK340 EA Release 8    Data format 
     HBDT H3K27me3 17  UCSD H1 BMP4 Derived Trophoblast Cultured Cells Histone H3K27me3 Library AK317 EA Release 8    Data format 
     HDNP H3K27me3 20  UCSD H1 Derived Neuronal Progenitor Cultured Cells Histone H3K27me3 Library AK320 EA Release 8    Data format 
     LV H3K27me3 01 36  UCSD Left Ventricle Histone H3K27me3 Donor STL001 Library AK236 EA Release 8    Data format 
     LV H3K27me3 03 34  UCSD Left Ventricle Histone H3K27me3 Donor STL003 Library AY134 EA Release 8    Data format 
     Pancreas H3K27me3 03 43  UCSD Pancreas Histone H3K27me3 Donor STL003 Library AK343 EA Release 8    Data format 
     PM H3K27me3 03 93  UCSD Psoas Muscle Histone H3K27me3 Donor STL003 Library AY93 EA Release 8    Data format 
     RV H3K27me3 03 52  UCSD Right Ventricle Histone H3K27me3 Donor STL003 Library AK352 EA Release 8    Data format 
     SC H3K27me3 01 30  UCSD Sigmoid Colon Histone H3K27me3 Donor STL001 Library AK230 EA Release 8    Data format 
     SC H3K27me3 03 95  UCSD Sigmoid Colon Histone H3K27me3 Donor STL003 Library AY95 EA Release 8    Data format 
     SI H3K27me3 01 24  UCSD Small Intestine Histone H3K27me3 Donor STL001 Library AK224 EA Release 8    Data format 
     Spleen H3K27me3 03 49  UCSD Spleen Histone H3K27me3 Donor STL003 Library AK349 EA Release 8    Data format 
     PFF H3K27me3 03 68  UCSF-UBC-USC Penis Foreskin Fibroblast Primary Cells Histone H3K27me3 Donor skin03 Library A15568 EA Release 8    Data format 
     PFK H3K27me3 03 75  UCSF-UBC-USC Penis Foreskin Keratinocyte Primary Cells Histone H3K27me3 Donor skin03 Library A15575 EA Release 8    Data format 
     PFM H3K27me3 03 82  UCSF-UBC-USC Penis Foreskin Melanocyte Primary Cells Histone H3K27me3 Donor skin03 Library A15582 EA Release 8    Data format 
     UCSF4star H3K27me3 72  UCSF-UBC-USC UCSF-4star Cell Line Histone H3K27me3 Library A14672 EA Release 8    Data format 
     HDNP H3K27me3 09  UCSD H1 Derived Neuronal Progenitor Cultured Cells Histone H3K27me3 Library AK409 EA Release 9    Data format 
     PI H3K27me3 13 72  UCSF-UBC-USC Pancreatic Islets Histone H3K27me3 Donor ZGI 213 Library A22472 EA Release 9    Data format 
     NGED H3K27me3 04 06  UCSF-UBC-USC Neurosphere Cultured Cells Ganglionic Eminence Derived Histone H3K27me3 Donor HuFNSC04 Library A19306 EA Release 9    Data format 
     UCSF4* H3K27me3 99  UCSF-UBC-USC UCSF-4* Cell Line Histone H3K27me3 Library A19299 EA Release 9    Data format 
     PBM H3K27me3 15 29  UCSF-UBC-USC Peripheral Blood Mononuclear Primary Cells Histone H3K27me3 Donor TC015 Library A21629 EA Release 9    Data format 
     BF H3K27me3 71 43  UCSF-UBC-USC Breast Fibroblast Primary Cells Histone H3K27me3 Donor RM071 Library A21643 EA Release 9    Data format 
     PA H3K27me3 02 20  UCSF-UBC-USC Placenta Amnion Histone H3K27me3 Donor CTL02 Library A21720 EA Release 9    Data format 
     PBM H3K27me3 16 36  UCSF-UBC-USC Peripheral Blood Mononuclear Primary Cells Histone H3K27me3 Donor TC016 Library A21636 EA Release 9    Data format 
     PCS H3K27me3 02 13  UCSF-UBC-USC Placenta Chorion Smooth Histone H3K27me3 Donor CTL02 Library A21713 EA Release 9    Data format 
     SSM H3K27me3 61 83  BI Stomach Smooth Muscle Histone H3K27me3 Donor 161 Library DNA_Lib 383 EA Release 9    Data format 
     BHM H3K27me3 49 61  BI Brain Hippocampus Middle Histone H3K27me3 Donor 149 Library DNA_Lib 1061 EA Release 9    Data format 
     AL H3K27me3 4 58  BI Adult Liver Histone H3K27me3 Donor 4 Library DNA_Lib 1058 EA Release 9    Data format 
     hDCEcto H3K27me3 93  BI hESC Derived CD56+ Ectoderm Cultured Cells Histone H3K27me3 Library DNA_Lib 3193 EA Release 9    Data format 
     HDN H3K27me3 e3  BI H9 Derived Neuron Cultured Cells Histone H3K27me3 Library Lib:RI:20101012:16--ChIP:MA:20100927:16:hN (ES H9 derived Neurons):H3K27Me3 EA Release 9    Data format 
     HDNP H3K27me3 e3  BI H9 Derived Neuronal Progenitor Cultured Cells Histone H3K27me3 Library Lib:RI:20101012:10--ChIP:MA:20100927:10:hNP (ES H9 derived Nuronal Progenitors):H3K27Me3 EA Release 9    Data format 
     CCIPsT H3K27me3 32 18  BI CD4+ CD25- IL17+ PMA-Ionomcyin stimulated Th17 Primary Cells Histone H3K27me3 Donor 332 Library DNA_Lib 2218 EA Release 9    Data format 
     CCCNN H3K27me3 32 12  BI CD4+ CD25- CD45RA+ Naive Primary Cells Histone H3K27me3 Donor 332 Library DNA_Lib 2212 EA Release 9    Data format 
     CCT H3K27me3 32 74  BI CD4+ CD25- Th Primary Cells Histone H3K27me3 Donor 332 Library DNA_Lib 2274 EA Release 9    Data format 
     CCCMM H3K27me3 32 98  BI CD4+ CD25- CD45RO+ Memory Primary Cells Histone H3K27me3 Donor 332 Library DNA_Lib 2098 EA Release 9    Data format 
     hDCEcto H3K27me3 07  BI hESC Derived CD56+ Ectoderm Cultured Cells Histone H3K27me3 Library DNA_Lib 1807 EA Release 9    Data format 
     CSM H3K27me3 56 49  BI Colon Smooth Muscle Histone H3K27me3 Donor 156 Library DNA_Lib 1849 EA Release 9    Data format 
     CCCTmem H3K27me3 32 68  BI CD4+ CD25int CD127+ Tmem Primary Cells Histone H3K27me3 Donor 332 Library DNA_Lib 2268 EA Release 9    Data format 
     CCIPsMpT H3K27me3 32 62  BI CD4+ CD25- IL17- PMA-Ionomycin stimulated MACS purified Th Primary Cells Histone H3K27me3 Donor 332 Library DNA_Lib 2262 EA Release 9    Data format 
     CCCTreg H3K27me3 32 91  BI CD4+ CD25+ CD127- Treg Primary Cells Histone H3K27me3 Donor 332 Library DNA_Lib 2091 EA Release 9    Data format 
     CD19 H3K27me3 79 85  UW CD19 Primary Cells Histone H3K27me3 Donor RO 01679 Library Histone.DS22585 EA Release 9    Data format 
     CD56 H3K27me3 79 94  UW CD56 Primary Cells Histone H3K27me3 Donor RO 01679 Library Histone.DS22594 EA Release 9    Data format 
     FT H3K27me3 44 02  UW Fetal Thymus Histone H3K27me3 Donor H-24644 Library Histone.DS22602 EA Release 9    Data format 
     FIL H3K27me3 95 53  UW Fetal Intestine Large Histone H3K27me3 Donor H-24595 Library Histone.DS22553 EA Release 9    Data format 
     FIS H3K27me3 95 56  UW Fetal Intestine Small Histone H3K27me3 Donor H-24595 Library Histone.DS22556 EA Release 9    Data format 
     FML H3K27me3 44 59  UW Fetal Muscle Leg Histone H3K27me3 Donor H-24644 Library Histone.DS22559 EA Release 9    Data format 
     CD14 H3K27me3 21 05  UW CD14 Primary Cells Histone H3K27me3 Donor RO 01721 Library Histone.DS22405 EA Release 9    Data format 
     FS H3K27me3 76 99  UW Fetal Stomach Histone H3K27me3 Donor H-24776 Library Histone.DS22599 EA Release 9    Data format 
     CD3 H3K27me3 79 27  UW CD3 Primary Cells Histone H3K27me3 Donor RO 01679 Library Histone.DS22927 EA Release 9    Data format 
     FIL H3K27me3 95 06  UW Fetal Intestine Large Histone H3K27me3 Donor H-24595 Library Histone.DS23306 EA Release 9    Data format 
     FMT H3K27me3 51 36  UW Fetal Muscle Trunk Histone H3K27me3 Donor H-24851 Library Histone.DS23036 EA Release 9    Data format 
     FAG H3K27me3 00 67  UW Fetal Adrenal Gland Histone H3K27me3 Donor H-24800 Library Histone.DS23067 EA Release 9    Data format 
     FP H3K27me3 96 12  UW Fetal Placenta Histone H3K27me3 Donor H-24996 Library Histone.DS23312 EA Release 9    Data format 
     CD19 H3K27me3 01 15  UW CD19 Primary Cells Histone H3K27me3 Donor RO 01701 Library Histone.DS23315 EA Release 9    Data format 
    
Assembly: Human Feb. 2009 (GRCh37/hg19)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

These tracks are genome-wide maps on epigenetic marks surveyed by Roadmap Epigenomics Project. Each track is about one type of epigenetic mark, and contains multiple experiments assayed for that mark type. DNA methylation and histone modification are two types of most important epigenetic marks.

DNA methylation of human DNA mostly happens on cytosine bases of CpG dinucleotides. The methylated DNA usually prevent accessibility of regulatory proteins and hampers transcription, while unmethylated DNA is usually indicative of open chromatin. The MeDIP-Seq and MRE-Seq experiments are usually performed on same sample to identify genome-wide DNA methylation pattern. MeDIP-Seq (methylated DNA immunoprecipitation and sequencing) is a ChIP-based approach utilizing antibody against methylated cytosine. This method enriches methylated DNA and high read count indicates high likelihood of underlying region is methylated. The MRE-Seq (methylation restriction enzyme sequencing) uses methylation-sensitive restriction enzymes to digest DNA, and only cut at unmethylated restriction sites. The cut restriction sites will be detected by sequencing where reads aligned to a restriction site on reference genome means the restriction site is unmethylated.

The MethylC-Seq (MethylC sequencing) uses bisulfite to convert methylated cytosines to thymines before sequencing. The percentage of reads with a T versus a C indicates the percentage methylation at the cytosine. Details can be found in this paper Lister R, et al., Nature. 2009 Nov 19;462(7271):315-22. .

RRBS (Reduced-Representation-Bisulfite-Sequencing) is similar to MethylC-seq except RRBS uses restriction enzyme to fragment the genome into fragments suitably-sized for sequencing. While RRBS produces percent methylation similar to MethylC-seq, it is limited to cytosines that are within restriction fragments of a suitable size and then tend to measure CpG dense regions only. Details can be found in this paper: Meissener, A. et al., Nucleic Acids Res. 2005; 33(18): 5868-5877. .

Histone marks are critical epigenetic components. They are covalent modifications of amino acid residues of histone proteins, which modify protein's biochemical property and affect transcription and chromatin state. The histone marks are measured by ChIP-Seq experiments (chromatin immunoprecipitation followed by sequencing).

Display conventions

Each track can be turned on/off individually. Inside each track, sub-tracks are displayed in same vertical space and are overlayed with transparent colors for contrast. All tracks displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. Sub-tracks sharing same space use same scale.

Methods

Experimental protocols: follow this link for experimental protocols.

Data processing: EDACC carried out data processing and quality assessment. Details are fully explained here . In brief, sequencing reads were aligned with 'Pash' program to derive read density data. The read density data is prepared into 'wiggle' format files with fixed step length of 20 bp. Data in wiggle and other formats have been deposited in NCBI Gene Expression Omnibus database for public access.

Quality control: the HotSpot was one of the methods used to assess quality of ChIP-Seq experiments. The long track name includes a "Hotspot_Score" field indicates the percentage of sequencing reads found inside hotspot regions. The "Pcnt" field shows the percentile of current experiment score in this type of ChIP-Seq experiments (e.g., all H3K4me3 ChIP-Seq experiments). This value is subject to change in next Data Release. The most comprehensive and up-to-date description on QC Metrics used by the consortium can be found here .

Release Notes

The data is combination of Release II, III, IV, V, VI, VII, VIII and IX which were mapped to human reference genome version hg19. The data is production of Roadmap Epigenomics Project.

Please follow the link for Roadmap Epigenomics data access policy

Credits

These data were generated in labs from participating institutions of Roadmap Epigenomics Project.

Useful links