UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	str-121	R02C2.5	2.0000000000000002e-71	chrV 253,516	C. elegans STR-121 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
2	nhr-199	K06B4.10	n/a	chrV 15,699,187	C. elegans NHR-199 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR001723 (Steroid hormone receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
3	ZK250.2	ZK250.2	n/a	chrII 1,949,294	contains similarity to Pfam domain PF02343 Domain of unknown function DUF130 contains similarity to Interpro domain IPR003326 (Protein of unknown function DUF130)
4	F53G2.8	F53G2.8	n/a	chrII 2,483,639
5	jmjd-2	Y48B6A.11	n/a	chrII 14,239,185	C. elegans JMJD-2 protein; contains similarity to Pfam domains PF02375 (jmjN domain) , PF02373 (JmjC domain) contains similarity to Interpro domains IPR001965 (Zinc finger, PHD-type), IPR013129 (Transcription factor jumonji), IPR003347 (Transcription factor jumonji/aspartyl beta-hydroxylase), IPR003349 (Transcription factor jumonji, JmjN), IPR011011 (Zinc finger, FYVE/PHD-type), IPR002999 (Tudor)
6	nhr-254	ZK6.5	n/a	chrV 393,883	C. elegans NHR-254 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR001723 (Steroid hormone receptor), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
7	F48G7.12	F48G7.12	n/a	chrV 644,981	contains similarity to Pfam domains PF02958 (Domain of unknown function (DUF227)) , PF07914 (Protein of unknown function (DUF1679)) contains similarity to Interpro domains IPR011009 (Protein kinase-like), IPR012877 (Protein of unknown function DUF1679, Caenorhabditis species), IPR004119 (Protein of unknown function DUF227), IPR015897 (CHK kinase-like)
8	T21B4.3	T21B4.3	n/a	chrII 12,495,897	contains similarity to Pfam domain PF01681 C6 domain contains similarity to Interpro domain IPR002601 (Protein of unknown function C6)
9	col-72	W09G10.1	n/a	chrII 3,521,069	C. elegans COL-72 protein; contains similarity to Pfam domain PF01391 Collagen triple helix repeat (20 copies) contains similarity to Interpro domains IPR000637 (HMG-I and HMG-Y, DNA-binding), IPR000694 (Proline-rich region), IPR008160 (Collagen triple helix repeat)
10	D1086.2	D1086.2	n/a	chrV 14,097,873	contains similarity to Pfam domain PF01358 (Poly A polymerase regulatory subunit)
11	hlh-29	F31A3.4	n/a	chrX 17,548,141	C. elegans HLH-29 protein; contains similarity to Pfam domain PF00010 Helix-loop-helix DNA-binding domain contains similarity to Interpro domains IPR001092 (Basic helix-loop-helix dimerisation region bHLH), IPR011598 (Helix-loop-helix DNA-binding)
12	lgc-40	T24D8.1	n/a	chrX 2,362,451	C. elegans LGC-40 protein; contains similarity to Pfam domains PF02931 (Neurotransmitter-gated ion-channel ligand binding domain) , PF02932 (Neurotransmitter-gated ion-channel transmembrane region) contains similarity to Interpro domains IPR006028 (Gamma-aminobutyric acid A receptor), IPR006201 (Neurotransmitter-gated ion-channel), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding), IPR006029 (Neurotransmitter-gated ion-channel transmembrane region)
13	T04B8.2	T04B8.2	n/a	chrII 631,033	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
14	T26E4.5	T26E4.5	n/a	chrV 15,787,827	contains similarity to Interpro domain IPR008996 ()
15	srz-54	Y102A5C.25	n/a	chrV 16,981,243	C. elegans SRZ-54 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
16	F53C3.11	F53C3.11	n/a	chrII 3,905,880	contains similarity to Pfam domain PF06542 Protein of unknown function (DUF1114) contains similarity to Interpro domain IPR009497 (Protein of unknown function DUF1114)
17	clec-226	R10D12.5	n/a	chrV 13,947,830	C. elegans CLEC-226 protein; contains similarity to Pfam domain PF08277 PAN-like domain contains similarity to Interpro domains IPR006583 (CW), IPR016187 (C-type lectin fold)
18	srj-32	F07G11.5	0.0002	chrV 7,296,979	C. elegans SRJ-32 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
19	Y49F6C.7	Y49F6C.7	n/a	chrII 3,367,722
20	F32E10.7	F32E10.7	n/a	chrIV 7,589,696
21	rom-3	Y116A8C.14	n/a	chrIV 16,967,844	C. elegans ROM-3 protein; contains similarity to Pfam domain PF01694 Rhomboid family contains similarity to Interpro domain IPR002610 (Peptidase S54, rhomboid)
22	srt-27	C24B9.6	n/a	chrV 2,720,278	C. elegans SRT-27 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
23	R09E12.5	R09E12.5	n/a	chrV 770,204
24	rcq-5	E03A3.2	n/a	chrIII 4,055,367	C. elegans RCQ-5 protein; contains similarity to Pfam domains PF00270 (DEAD/DEAH box helicase) , PF00271 (Helicase conserved C-terminal domain) contains similarity to Interpro domains IPR011545 (DNA/RNA helicase, DEAD/DEAH box type, N-terminal), IPR004589 (DNA helicase, ATP-dependent, RecQ type), IPR014021 (Helicase, superfamily 1 and 2, ATP-binding), IPR014001 (DEAD-like helicase, N-terminal), IPR001650 (DNA/RNA helicase, C-terminal)
25	F36A2.2	F36A2.2	n/a	chrI 8,803,215	contains similarity to Pfam domain PF01207 Dihydrouridine synthase (Dus) contains similarity to Interpro domains IPR013785 (Aldolase-type TIM barrel), IPR001269 (Dihydrouridine synthase, DuS)
26	B0244.6	B0244.6	n/a	chrIII 5,741,364	contains similarity to Pfam domain PF00014 Kunitz/Bovine pancreatic trypsin inhibitor domain contains similarity to Interpro domains IPR006150 (Cysteine-rich repeat), IPR002223 (Proteinase inhibitor I2, Kunitz metazoa)
27	Y7A5A.2	Y7A5A.2	n/a	chrX 15,772,148	contains similarity to Aquifex aeolicus Hypothetical protein AQ_372.; SW:Y372_AQUAE
28	M142.5	M142.5	n/a	chrIII 10,931,599	contains similarity to Homo sapiens Isoform 1 of Protein LSM12 homolog; ENSEMBL:ENSP00000293406
29	fbxb-100	Y63D3A.2	n/a	chrI 14,093,529	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
30	T03G6.3	T03G6.3	n/a	chrX 2,613,474	contains similarity to Pfam domain PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase contains similarity to Interpro domains IPR017849 (Alkaline phosphatase-like, alpha/beta/alpha), IPR002591 (Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase), IPR017850 (Alkaline-phosphatase-like, core domain)
31	T05H4.4	T05H4.4	n/a	chrV 6,439,469	The T05H4.4 gene encodes a homolog of the human gene B5R, which when mutated leads to methemoglobinemia (OMIM:250800).
32	T23G11.1	T23G11.1	n/a	chrI 7,701,721	contains similarity to Plasmodium falciparum Hypothetical protein.; TR:Q8I452
33	bra-1	F54B11.6	n/a	chrX 13,598,994	The bra-1 gene encodes a homolog of the human BMP receptor-associated molecule (BRAM1) that negatively regulates the DAF-1/DAF-7/DAF-14 TGF-beta signalling pathway.
34	acr-11	D2092.3	n/a	chrI 6,623,291	A homolog of an alpha type nicotinic acetylcholine receptor subunit involved in the mediation of fast synaptic transmission at neuromuscular junctions.
35	scm-1	M01D7.2	n/a	chrI 1,867,460	C. elegans SCM-1 protein; contains similarity to Pfam domain PF04144 SCAMP family contains similarity to Interpro domains IPR001395 (Aldo/keto reductase), IPR007273 (SCAMP)
36	ZK430.1	ZK430.1	n/a	chrII 4,428,903	contains similarity to Pfam domain PF08146 BP28CT (NUC211) domain contains similarity to Interpro domains IPR012954 (BP28, C-terminal), IPR016024 (Armadillo-type fold)
37	twk-20	C40C9.1	n/a	chrX 13,640,987	C. elegans TWK-20 protein; contains similarity to Pfam domain PF07885 Ion channel contains similarity to Interpro domains IPR013521 (Potassium channel, inwardly rectifying, Kir, conserved region 2), IPR003280 (Potassium channel, two pore-domain), IPR003938 (Potassium channel, voltage-dependent, EAG/ELK/ERG), IPR013099 (Ion transport 2), IPR003092 (Potassium channel, two pore-domain, TASK)
38	F53A3.6	F53A3.6	n/a	chrIII 1,929,496	contains similarity to Interpro domains IPR003072 (Orphan nuclear receptor, NOR1 type), IPR000104 (Antifreeze protein, type I), IPR001778 (Pollen allergen Poa pIX/Phl pVI, C-terminal)
39	msp-38	K08F4.8	n/a	chrIV 10,143,514	msp-38 encodes a member of the major sperm protein family; msp-38 has a C. briggsae homolog as predicted by the Wobble Bulk Aware Bulk Aligner (WABA).
40	T26G10.3	T26G10.3	n/a	chrIII 9,413,048	contains similarity to Pfam domain PF01282 Ribosomal protein S24e contains similarity to Interpro domain IPR001976 (Ribosomal protein S24e)
41	hst-3.1	F40H3.5	n/a	chrII 6,168,467	C. elegans HST-3.1 protein; contains similarity to Pfam domain PF00685 Sulfotransferase domain contains similarity to Interpro domain IPR000863 (Sulphotransferase)
42	sod-5	ZK430.3	n/a	chrII 4,418,355	C. elegans SOD-5 protein; contains similarity to Pfam domain PF00080 Copper/zinc superoxide dismutase (SODC) contains similarity to Interpro domain IPR001424 (Superoxide dismutase, copper/zinc binding)
43	mec-10	F16F9.5	n/a	chrX 8,467,984	The mec-10 gene encodes an amiloride-sensitive Na+ channel protein (degenerin) required to sense gentle mechanical stimuli (e.g. touch) along the body wall; it is paralogous to mec-4, which has similar function in vivo.
44	B0432.6	B0432.6	n/a	chrII 267,814	contains similarity to Interpro domain IPR000533 (Tropomyosin)
45	nhr-229	Y116A8C.18	n/a	chrIV 17,029,937	C. elegans NHR-229 protein; contains similarity to Interpro domain IPR001628 (Zinc finger, nuclear hormone receptor-type)
46	uvt-2	C24H10.5	n/a	chrX 5,076,202	uvt-2 encodes a protein that contains four EF-hand calcium binding motifs with similarity to human calmodulin; mRNA weakly expressed in L1 through L4 larval stages and in the adult hermaphrodite.
47	E01B7.1	E01B7.1	n/a	chrV 17,926,717	contains similarity to Interpro domains IPR001763 (Rhodanese-like), IPR000694 (Proline-rich region)
48	B0412.3	B0412.3	n/a	chrIII 802,243	contains similarity to Pfam domain PF07919 Protein of unknown function (DUF1683) contains similarity to Interpro domain IPR012880 (Protein of unknown function DUF1683, C-terminal)
49	mog-4	C04H5.6	n/a	chrII 14,556,957	The mog-4 gene encodes a DEAH helicase orthologous to the Drosophila CG10689 and the S. cerevisiae PRP2 proteins.
50	sulp-8	ZK287.2	n/a	chrV 9,671,599	sulp-8 encodes one of eight C. elegans members of the sulfate permease family of anion transporters; by homology, SULP-8 is predicted to function as an anion transporter that regulates cellular pH and volume via transmembrane movement of electrolytes and fluids; a SULP-8::GFP fusion is expressed in the basolateral membrane of the excretory cell, intestine, and rectal gland cells.