UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	math-25	C46F9.4	0	chrII 1,896,912	C. elegans MATH-25 protein; contains similarity to Pfam domain PF00917 MATH domain contains similarity to Interpro domains IPR008974 (TRAF-like), IPR002083 (MATH)
2	srh-227	C35D6.2	n/a	chrIV 16,343,304	C. elegans SRH-227 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
3	W05H5.2	W05H5.2	n/a	chrII 12,442,169	contains similarity to Xanthomonas campestris Hypothetical protein.; TR:Q9Z3D0
4	lgc-6	F17E9.8	n/a	chrIV 8,341,064	C. elegans LGC-6 protein; contains similarity to Pfam domain PF02931 Neurotransmitter-gated ion-channel ligand binding domain contains similarity to Interpro domains IPR006201 (Neurotransmitter-gated ion-channel), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding)
5	B0410.1	B0410.1	n/a	chrX 2,894,901
6	nhr-266	F56H1.2	n/a	chrI 5,738,931	C. elegans NHR-266 protein; contains similarity to Pfam domains PF02206 (Domain of unknown function) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR003125 (Protein of unknown function WSN)
7	sulp-5	K12G11.2	n/a	chrV 11,881,591	sulp-5 encodes one of eight C. elegans members of the sulfate permease family of anion transporters; by homology, SULP-5 is predicted to function as an anion transporter that regulates cellular pH and volume via transmembrane movement of electrolytes and fluids; a SULP-5::GFP fusion is expressed in punctate structures irregularly distributed along the apical membrane of excretory cell canals and is also expressed weakly in adult seam cells.
8	dod-20	B0554.6	n/a	chrV 423,333	C. elegans DOD-20 protein; contains similarity to Pfam domain PF03409 Protein of unknown function (DUF274) contains similarity to Interpro domain IPR005071 (Protein of unknown function DUF274)
9	C01B7.3	C01B7.3	n/a	chrV 8,783,769
10	T28H10.1	T28H10.1	n/a	chrV 12,504,477	contains similarity to Pfam domain PF01648 4'-phosphopantetheinyl transferase superfamily contains similarity to Interpro domain IPR008278 (4'-phosphopantetheinyl transferase)
11	ZK1073.1	ZK1073.1	n/a	chrX 16,126,525	contains similarity to Pfam domain PF03096 Ndr family contains similarity to Interpro domain IPR004142 (Ndr)
12	T26E4.5	T26E4.5	n/a	chrV 15,787,827	contains similarity to Interpro domain IPR008996 ()
13	F45F2.1	F45F2.1	n/a	chrV 8,538,519	contains similarity to Pfam domain PF03189 Protein of unknown function, DUF270 contains similarity to Interpro domain IPR004878 (Protein of unknown function DUF270)
14	C17F4.3	C17F4.3	n/a	chrII 3,241,131
15	ZC239.2	ZC239.2	n/a	chrII 3,218,443	contains similarity to Pfam domain PF02214 K+ channel tetramerisation domain contains similarity to Interpro domains IPR011333 (BTB/POZ fold), IPR003131 (Potassium channel, voltage dependent, Kv, tetramerisation)
16	T05C3.2	T05C3.2	n/a	chrV 5,498,362	The T05C3.2 gene encodes a protein that may be involved in apoptosis.
17	C46E10.2	C46E10.2	n/a	chrII 3,723,631
18	C12D5.4	C12D5.4	n/a	chrV 7,672,548
19	C54D10.8	C54D10.8	n/a	chrV 12,445,902	contains similarity to Homo sapiens cDNA FLJ44007 fis, clone TESTI4023762; ENSEMBL:ENSP00000364402
20	C43H6.6	C43H6.6	n/a	chrX 2,397,074	contains similarity to Pfam domains PF00059 (Lectin C-type domain) , PF00431 (CUB domain) contains similarity to Interpro domains IPR000859 (CUB), IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
21	K06H6.6	K06H6.6	n/a	chrV 584,556	contains similarity to Pfam domain PF01531 Glycosyl transferase family 11 contains similarity to Interpro domain IPR002516 (Glycosyl transferase, family 11)
22	F23B2.10	F23B2.10	n/a	chrIV 9,153,550	contains similarity to Interpro domain IPR001841 (Zinc finger, RING-type)
23	str-204	F10D2.1	n/a	chrV 7,160,334	C. elegans STR-204 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
24	pde-1	T04D3.3	n/a	chrI 13,314,797	C. elegans PDE-1 protein; contains similarity to Pfam domains PF08499 (3'5'-cyclic nucleotide phosphodiesterase N-terminal) , PF00233 (3'5'-cyclic nucleotide phosphodiesterase) contains similarity to Interpro domains IPR002073 (3'5'-cyclic nucleotide phosphodiesterase), IPR013706 (3'5'-cyclic nucleotide phosphodiesterase N-terminal), IPR003607 (Metal-dependent phosphohydrolase, HD region)
25	srab-18	T11A5.3	n/a	chrV 9,870,635	C. elegans SRAB-18 protein; contains similarity to Interpro domain IPR002184 (Serpentine beta receptor)
26	fbxa-195	R09B5.1	n/a	chrV 1,435,696	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
27	B0496.1	B0496.1	n/a	chrIV 7,446,888	contains similarity to Pfam domain PF00651 BTB/POZ domain contains similarity to Interpro domains IPR011333 (BTB/POZ fold), IPR013069 (BTB/POZ), IPR000210 (BTB/POZ-like)
28	C17G1.1	C17G1.1	n/a	chrX 9,919,758	contains similarity to Trypanosoma rangeli Kinetoplastid membrane protein 11.; TR:Q7YZC6
29	F18A12.3	F18A12.3	n/a	chrII 3,408,455	F18A12.3 encodes a neprilysin; neprilysins are thermolysin-like zinc metallopeptidases, found on the outer surface of animal cells, that negatively regulate small signalling peptides (e.g., enkephalin, tachykinin, insulin, and natriuretic peptides) by cleaving them; F18A12.3 has no clear orthologs in other organisms.
30	twk-7	F22B7.7	n/a	chrIII 8,638,816	C. elegans TWK-7 protein; contains similarity to Pfam domain PF07885 Ion channel contains similarity to Interpro domains IPR003280 (Potassium channel, two pore-domain), IPR013099 (Ion transport 2), IPR003092 (Potassium channel, two pore-domain, TASK)
31	Y70C5C.3	Y70C5C.3	n/a	chrV 16,714,293	contains similarity to Pfam domain PF03269 Caenorhabditis protein of unknown function, DUF268 contains similarity to Interpro domain IPR004951 (Protein of unknown function DUF268, Caenorhabditis species)
32	magi-1	K01A6.2	n/a	chrIV 11,721,610	C. elegans MAGI-1 protein; contains similarity to Pfam domains PF00595 (PDZ domain (Also known as DHR or GLGF)) (4), PF00397 (WW domain) (2), PF00625 (Guanylate kinase) contains similarity to Interpro domains IPR008144 (Guanylate kinase), IPR008145 (Guanylate kinase/L-type calcium channel region), IPR002349 (WW), IPR001478 (PDZ/DHR/GLGF), IPR001202 (WW/Rsp5/WWP)
33	srh-203	F20E11.10	n/a	chrV 17,455,364	C. elegans SRH-203 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
34	T09F5.2	T09F5.2	n/a	chrV 15,151,275	contains similarity to Saccharomyces cerevisiae cell wall mannoprotein; SGD:YOR009W
35	sre-20	ZC455.7	n/a	chrV 12,783,819	C. elegans SRE-20 protein; contains similarity to Pfam domain PF03125 C. elegans Sre G protein-coupled chemoreceptor contains similarity to Interpro domains IPR004151 (C. elegans Sre G protein-coupled chemoreceptor), IPR008075 (Lipocalin-1 receptor)
36	F48A9.2	F48A9.2	n/a	chrI 6,593,082
37	Y40B1A.1	Y40B1A.1	n/a	chrI 13,346,056	contains similarity to Lampropeltis getula nigrita Cytochrome b.; TR:Q953V8
38	F59C12.3	F59C12.3	n/a	chrX 16,606,372	contains similarity to Interpro domain IPR009114 (Angiomotin)
39	pqn-92	Y75B8A.27	n/a	chrIII 12,309,726	The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).
40	F46F5.15	F46F5.15	n/a	chrII 788,813
41	nhr-188	F47C10.7	n/a	chrV 3,857,080	C. elegans NHR-188 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
42	T04C12.1	T04C12.1	n/a	chrV 11,058,930	n/a
43	K04F1.12	K04F1.12	n/a	chrV 1,656,168	contains similarity to Pfam domain PF01030 Receptor L domain contains similarity to Interpro domain IPR000494 (EGF receptor, L domain)
44	R11D1.4	R11D1.4	n/a	chrV 12,713,623	contains similarity to Xenopus laevis Similar to kinesin-like 1.; TR:Q8AVK8
45	C45G3.4	C45G3.4	n/a	chrI 9,219,134	contains similarity to Dictyostelium discoideum Prespore-specific protein (Fragment).; TR:O97140
46	F25E2.1	F25E2.1	n/a	chrX 803,494	contains similarity to Interpro domain IPR000276 (GPCR, rhodopsin-like)
47	F19B10.6	F19B10.6	n/a	chrII 3,663,696
48	Y116A8C.5	Y116A8C.5	n/a	chrIV 16,925,748	Y116A8C.5 encodes a neprilysin; neprilysins are thermolysin-like zinc metallopeptidases, found on the outer surface of animal cells, that negatively regulate small signalling peptides (e.g., enkephalin, tachykinin, insulin, and natriuretic peptides) by cleaving them; Y116A8C.5 has no clear orthologs in other organisms.
49	srj-27	T01G5.3	n/a	chrV 15,126,838	C. elegans SRJ-27 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
50	fbxb-99	Y8A9A.5	n/a	chrII 3,792,968	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.