Affine Alignment
 
Alignment between jkk-1 (top F35C8.3 435aa) and old-1 (bottom C08H9.5 502aa) score 1938

128 LGSGSCGVVESATVRSK-----------LMAVKTMYKNDNKENLKRILRDVRIM-SMCNS 175
    ||||  |++    +|||            +|||      |+   + |  ++++| ++   
181 LGSGEFGIIRKGFLRSKNSKNEEKESRLEVAVKLPLNEYNQIQQELIYDELKVMCAVGKH 240

176 PFIVTSYGYFMFDSSVKICMQIMSACCEKLLRRIYHSKLDFFPEFVAGHIVYSAISALDY 235
    | |+   |   |     |  + +      ||  +  +++ |  +         ++| +| 
241 PNILALVGGITFGERKMIVSEFVEN--GDLLSFLRDNRIYFTNDQWTLETEQDSLSLVDL 298

236 LKEKHSI------------IHRDIKPSNILFDDSGNVKLCDFGIS-GFMTDSMAHSKSAG 282
    |     |            +|||+   |+|   +  +++ |||++          ++|  
299 LSFAFQIAKGMEYLIHVPCVHRDLALRNVLIKKNRIIRIADFGLARRHKNKDYYKTQSVD 358

283 CP---PYMAPERLTIETNSKYDVRSDVWSLGITVYQLVT-GLYPF 323
     |    +|||| +       +  +||||| |+ +|+| + |  |+
359 TPLPIHWMAPESI---DKLLFTQKSDVWSYGVCLYELFSLGKSPY 400