UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	ZK596.1	ZK596.1	2e-73	chrIV 10,900,848	contains similarity to Pfam domain PF02520 Domain of unknown function DUF148 contains similarity to Interpro domains IPR002952 (Eggshell protein), IPR003677 (Protein of unknown function DUF148)
2	skr-9	C52D10.7	n/a	chrIV 17,163,837	skr-9 encodes a homolog of Skp1 in S. cerevisiae, a component of the SCF (Skp1, Cullin, F-box) ubiquitin-ligase complex that regulates ubiquitin-mediated protein degradation; SKR-9 is required for posterior body morphogenesis, embryonic and larval development, and postembryonic cell proliferation.
3	C10G8.2	C10G8.2	n/a	chrV 5,314,980	contains similarity to Pfam domain PF00014 Kunitz/Bovine pancreatic trypsin inhibitor domain contains similarity to Interpro domain IPR002223 (Proteinase inhibitor I2, Kunitz metazoa)
4	try-7	ZC581.6	n/a	chrI 6,642,054	C. elegans TRY-7 protein; contains similarity to Pfam domains PF00089 (Trypsin) , PF03761 (Domain of unknown function (DUF316)) contains similarity to Interpro domains IPR001314 (Peptidase S1A, chymotrypsin), IPR001254 (Peptidase S1 and S6, chymotrypsin/Hap), IPR005514 (Protein of unknown function DUF316), IPR009003 (Peptidase, trypsin-like serine and cysteine)
5	Y48B6A.5	Y48B6A.5	n/a	chrII 14,173,958	contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein)
6	K06A1.2	K06A1.2	n/a	chrII 6,445,339
7	tag-191	C53A5.4	n/a	chrV 14,535,355	C. elegans TAG-191 protein; contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
8	T10E9.6	T10E9.6	n/a	chrI 6,529,637	contains similarity to Pfam domain PF03134 TB2/DP1, HVA22 family contains similarity to Interpro domain IPR004345 (TB2/DP1 and HVA22 related protein)
9	F09E8.1	F09E8.1	n/a	chrIV 13,141,838	contains similarity to Pfam domain PF01666 DX module contains similarity to Interpro domains IPR011052 (Proteinase and amylase inhibitor), IPR002593 (Protein of unknown function DX)
10	R148.7	R148.7	n/a	chrIII 3,196,950
11	Y116A8A.7	Y116A8A.7	n/a	chrIV 16,830,442	contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein)
12	ZK1248.17	ZK1248.17	n/a	chrII 5,845,365	contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein)
13	C13C4.4	C13C4.4	n/a	chrV 12,110,082	contains similarity to Pfam domain PF00702 haloacid dehalogenase-like hydrolase contains similarity to Interpro domains IPR005833 (Haloacid dehydrogenase/epoxide hydrolase), IPR006355 (HAD-superfamily hydrolase, subfamily IIA, hypothetical 2), IPR006357 (HAD-superfamily hydrolase, subfamily IIA), IPR005834 (Haloacid dehalogenase-like hydrolase)
14	F25E5.7	F25E5.7	n/a	chrV 7,440,782	contains similarity to Pfam domain PF03761 Domain of unknown function (DUF316) contains similarity to Interpro domains IPR001254 (Peptidase S1 and S6, chymotrypsin/Hap), IPR005514 (Protein of unknown function DUF316), IPR009003 (Peptidase, trypsin-like serine and cysteine)
15	sra-38	T21H8.3	n/a	chrX 13,898,963	C. elegans SRA-38 protein; contains similarity to Pfam domains PF02117 (C.elegans Sra family integral membrane protein) , PF03125 (C. elegans Sre G protein-coupled chemoreceptor) , PF02175 (C.elegans integral membrane protein Srb) contains similarity to Interpro domains IPR002184 (Serpentine beta receptor), IPR004151 (C. elegans Sre G protein-coupled chemoreceptor), IPR000344 (Nematode chemoreceptor, Sra)
16	F37A4.4	F37A4.4	n/a	chrIII 6,715,740	contains similarity to Pfam domains PF02206 (Domain of unknown function) , PF00023 (Ankyrin repeat) , PF00533 (BRCA1 C Terminus (BRCT) domain) (2)contains similarity to Interpro domains IPR002110 (Ankyrin), IPR003125 (Protein of unknown function WSN), IPR001357 (BRCT)
17	C26B9.2	C26B9.2	n/a	chrX 5,341,141
18	K01D12.15	K01D12.15	n/a	chrV 12,386,487	contains similarity to Interpro domains IPR001859 (Ribosomal protein P2), IPR000976 (Wilm's tumour protein)
19	F59E12.3	F59E12.3	n/a	chrII 5,638,690	contains similarity to Interpro domains IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core)
20	C26B2.2	C26B2.2	n/a	chrIV 8,021,582
21	nas-5	T23H4.3	n/a	chrI 9,887,167	nas-5 encodes an astacin-like metalloprotease; loss of nas-5 activity in an RNAi hypersensitive strain results in axon guidance defects, including a failure of DD/VD motoneuron commissures to reach the dorsal cord, defasciculation of the dorsal nerve cord, and midline crossing defects in the ventral nerve cord.
22	Y113G7B.14	Y113G7B.14	n/a	chrV 20,223,220	contains similarity to Pfam domains PF04851 (Type III restriction enzyme, res subunit) , PF00176 (SNF2 family N-terminal domain) contains similarity to Interpro domains IPR006935 (Restriction endonuclease, type I, R subunit/Type III, Res subunit), IPR000330 (SNF2-related), IPR014021 (Helicase, superfamily 1 and 2, ATP-binding), IPR014001 (DEAD-like helicase, N-terminal)
23	M7.12	M7.12	n/a	chrIV 11,097,281	contains similarity to Interpro domain IPR016181 (Acyl-CoA N-acyltransferase)
24	ZK1225.5	ZK1225.5	n/a	chrI 13,217,724
25	T22B2.7	T22B2.7	n/a	chrX 3,909,459
26	C02F5.2	C02F5.2	n/a	chrIII 8,249,732
27	tba-6	F32H2.9	n/a	chrI 8,996,289	C. elegans TBA-6 protein; contains similarity to Pfam domains PF00091 (Tubulin/FtsZ family, GTPase domain) , PF03953 (Tubulin/FtsZ family, C-terminal domain) contains similarity to Interpro domains IPR002454 (Gamma tubulin), IPR002452 (Alpha tubulin), IPR002453 (Beta tubulin), IPR000217 (Tubulin), IPR003008 (Tubulin/FtsZ, GTPase), IPR004057 (Epsilon tubulin), IPR002967 (Delta tubulin), IPR000158 (Cell division protein FtsZ, N-terminal), IPR008280 (Tubulin/FtsZ, C-terminal)
28	lips-2	C04B4.3	n/a	chrX 12,286,461	C. elegans LIPS-2 protein; contains similarity to Pfam domain PF01674 Lipase (class 2) contains similarity to Interpro domain IPR002918 (Lipase, class 2)
29	W01D2.3	W01D2.3	n/a	chrII 14,802,515	contains similarity to Haemophilus influenzae Electron transport complex protein rnfD.; SW:RNFD_HAEIN
30	F23C8.1	F23C8.1	n/a	chrI 2,447,555
31	T08H10.1	T08H10.1	n/a	chrV 4,484,972	contains similarity to Pfam domain PF00248 Aldo/keto reductase family contains similarity to Interpro domain IPR001395 (Aldo/keto reductase)
32	T09B4.3	T09B4.3	n/a	chrI 6,177,087
33	ech-3	F43H9.1	n/a	chrV 8,022,781	C. elegans ECH-3 protein; contains similarity to Pfam domain PF00378 Enoyl-CoA hydratase/isomerase family contains similarity to Interpro domain IPR001753 (Crotonase, core)
34	F23B12.1	F23B12.1	n/a	chrV 14,429,754	contains similarity to Pfam domain PF00149 Calcineurin-like phosphoesterase contains similarity to Interpro domains IPR004843 (Metallophosphoesterase), IPR006186 (Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase)
35	ptr-9	F54G8.5	n/a	chrIII 9,159,358	ptr-9 encodes an ortholog of Drosophila and human PTCHD3, which defines one of seven paralogous families of sterol sensing domain (SSD) proteins; PTR-9 is required for normal development in mass RNAi assays.
36	W01B11.1	W01B11.1	n/a	chrI 3,300,049	contains similarity to Interpro domain IPR000694 (Proline-rich region)
37	H04M03.11	H04M03.11	n/a	chrIV 5,883,356
38	ace-3	Y48B6A.8	n/a	chrII 14,207,809	ace-3 encodes one of four C. elegans acetylcholinesterases (AChE); ACE-3 represents ~5% of the total AChE activity in C. elegans and in vitro, hydrolyzes acetylthio-, butyrylthio-, and propionylthiocholine substrates with equal efficiency; although loss-of-function mutations in ace-3 result in no obvious defects, animals doubly mutant with ace-1 or ace-2 have slight defects in backward locomotion and animals triply mutant for ace-1, -2, and -3 arrest as unhatched, yet fully developed, embryos; ace-3 is the downstream gene in an operon with a fourth AChE-encoding gene, ace-4, and transcriptional reporter fusions with ace-4 upstream sequences direct expression in pharyngeal muscles pm3, 4, 5, and 7, the two CAN (canal associated neuron) cells, midbody dorsal body wall muscles in larvae, and several neurons in the head and anal ganglion
39	srv-12	T04B2.4	n/a	chrIV 10,052,440	C. elegans SRV-12 protein ;
40	set-19	W01C8.3	n/a	chrX 5,677,695	set-19 encodes a SET domain-containing protein; SET-19 has no non-nematode orthologs, but several paralogs (SET-6, SET-13, SET-15, SET-20, SET-21, and SET-32); neither set-19(ok1813) nor set-19(RNAi) have any obvious phenotypes.
41	H11E01.3	H11E01.3	n/a	chrX 1,612,018	contains similarity to Staphylococcus saprophyticus subsp saprophyticus Uro-adherence factor A precursor.; SW:Q4A0V8
42	C10G11.10	C10G11.10	n/a	chrI 6,305,695
43	W03D8.3	W03D8.3	n/a	chrI 2,821,478	contains similarity to Interpro domain IPR000694 (Proline-rich region)
44	clec-78	F47C12.2	n/a	chrIV 3,990,320	C. elegans CLEC-78 protein; contains similarity to Pfam domains PF00431 (CUB domain) (2), PF00059 (Lectin C-type domain) , PF00057 (Low-density lipoprotein receptor domain class A) contains similarity to Interpro domains IPR002172 (Low density lipoprotein-receptor, class A, cysteine-rich), IPR000859 (CUB), IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin), IPR002353 (Type II antifreeze protein)
45	Y47H9B.2	Y47H9B.2	n/a	chrI 11,745,783	contains similarity to Pfam domain PF03761 Domain of unknown function (DUF316) contains similarity to Interpro domain IPR005514 (Protein of unknown function DUF316)
46	C01G5.3	C01G5.3	n/a	chrIV 6,537,601	contains similarity to Homo sapiens hypothetical protein; ENSEMBL:ENSP00000352916
47	R07C3.4	R07C3.4	n/a	chrII 934,987	contains similarity to Pfam domain PF00501 AMP-binding enzyme contains similarity to Interpro domain IPR000873 (AMP-dependent synthetase and ligase)
48	F26C11.1	F26C11.1	n/a	chrII 9,894,986	contains similarity to Pfam domain PF00328 Histidine acid phosphatase contains similarity to Interpro domain IPR000560 (Histidine acid phosphatase)
49	F36H12.10	F36H12.10	n/a	chrIV 5,254,079	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR016130 (Protein-tyrosine phosphatase, active site), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000387 (Protein-tyrosine phosphatase)
50	ggr-1	C09G5.1	n/a	chrII 10,698,711	ggr-1 encodes a predicted member of the GABA/ glycine receptor family of ligand-gated chloride channels that affects thermotaxis; expressed in AIB, PVR, PVQ, AVH, and SMDV neurons and in some motor neurons in the ventral cord, and in the egg-laying muscles.