UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	ZK1073.1	ZK1073.1	0	chrX 16,126,525	contains similarity to Pfam domain PF03096 Ndr family contains similarity to Interpro domain IPR004142 (Ndr)
2	magi-1	K01A6.2	n/a	chrIV 11,721,610	C. elegans MAGI-1 protein; contains similarity to Pfam domains PF00595 (PDZ domain (Also known as DHR or GLGF)) (4), PF00397 (WW domain) (2), PF00625 (Guanylate kinase) contains similarity to Interpro domains IPR008144 (Guanylate kinase), IPR008145 (Guanylate kinase/L-type calcium channel region), IPR002349 (WW), IPR001478 (PDZ/DHR/GLGF), IPR001202 (WW/Rsp5/WWP)
3	fbxb-99	Y8A9A.5	n/a	chrII 3,792,968	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
4	fbxb-6	F07E5.1	n/a	chrII 2,066,717	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
5	str-123	T22H6.4	n/a	chrX 12,790,964	C. elegans STR-123 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
6	T08D2.6	T08D2.6	n/a	chrX 180,977	contains similarity to Homo sapiens Protein YIPF4; ENSEMBL:ENSP00000238831
7	W04E12.3	W04E12.3	n/a	chrV 19,737,520	contains similarity to Bacillus subtilis Nuclease sbcCD subunit C.; SW:SBCC_BACSU
8	T02G6.1	T02G6.1	n/a	chrI 11,796,907	contains similarity to Plasmodium falciparum Hypothetical protein.; TR:Q8I4U4
9	C44C10.6	C44C10.6	n/a	chrX 11,698,664	contains similarity to Streptococcus pneumoniae GtrA family protein.; TR:Q97R28
10	fbxa-195	R09B5.1	n/a	chrV 1,435,696	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
11	math-6	C16C4.11	n/a	chrII 1,884,167	C. elegans MATH-6 protein; contains similarity to Pfam domain PF00917 MATH domain contains similarity to Interpro domains IPR008974 (TRAF-like), IPR002083 (MATH)
12	F59C12.3	F59C12.3	n/a	chrX 16,606,372	contains similarity to Interpro domain IPR009114 (Angiomotin)
13	K04F10.2	K04F10.2	n/a	chrI 6,362,454	contains similarity to Interpro domain IPR008979 (Galactose-binding like)
14	asna-2	F47G3.2	n/a	chrX 2,383,478	C. elegans ASNA-2 protein; contains similarity to Pfam domain PF02374 Anion-transporting ATPase contains similarity to Interpro domain IPR003348 (Anion-transporting ATPase)
15	T15D6.12	T15D6.12	n/a	chrI 12,400,253	contains similarity to Pfam domain PF01697 Domain of unknown function contains similarity to Interpro domain IPR008166 (Protein of unknown function DUF23)
16	T26E4.5	T26E4.5	n/a	chrV 15,787,827	contains similarity to Interpro domain IPR008996 ()
17	F57B9.1	F57B9.1	n/a	chrIII 6,962,648	contains similarity to Pfam domain PF01243 Pyridoxamine 5'-phosphate oxidase contains similarity to Interpro domains IPR012349 (FMN-binding split barrel), IPR011576 (Pyridoxamine 5'-phosphate oxidase-related, FMN-binding core), IPR009002 (FMN-binding split barrel, related), IPR000659 (Pyridoxamine 5'-phosphate oxidase)
18	srg-55	W09D12.2	n/a	chrV 14,927,504	C. elegans SRG-55 protein ;
19	B0507.5	B0507.5	n/a	chrV 8,754,261
20	srbc-25	F40D4.6	n/a	chrV 17,174,753	C. elegans SRBC-25 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
21	C36C5.4	C36C5.4	n/a	chrV 3,167,003	contains similarity to Pfam domain PF01579 Domain of unknown function DUF19 contains similarity to Interpro domains IPR016638 (Uncharacterised conserved protein UPF0376), IPR002542 (Protein of unknown function DUF19)
22	Y17G7B.13	Y17G7B.13	n/a	chrII 12,045,368	contains similarity to Pfam domain PF06090 Domain of unknown function (DUF941) contains similarity to Interpro domain IPR009286 (Protein of unknown function DUF941)
23	C43H6.6	C43H6.6	n/a	chrX 2,397,074	contains similarity to Pfam domains PF00059 (Lectin C-type domain) , PF00431 (CUB domain) contains similarity to Interpro domains IPR000859 (CUB), IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
24	C17B7.10	C17B7.10	n/a	chrV 3,341,460	C17B7.10 encodes a neprilysin; neprilysins are thermolysin-like zinc metallopeptidases, found on the outer surface of animal cells, that negatively regulate small signalling peptides (e.g., enkephalin, tachykinin, insulin, and natriuretic peptides) by cleaving them; C17B7.10 has no clear orthologs in other organisms.
25	W06G6.7	W06G6.7	n/a	chrV 16,640,273	contains similarity to Pfam domains PF00622 (SPRY domain) , PF00041 (Fibronectin type III domain) , PF00097 (Zinc finger, C3HC4 type (RING finger)) , PF00643 (B-box zinc finger) contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR008957 (Fibronectin, type III-like fold), IPR001870 (B302, (SPRY)-like), IPR003961 (Fibronectin, type III), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR003649 (B-box, C-terminal), IPR003877 (SPla/RYanodine receptor SPRY), IPR000315 (Zinc finger, B-box)
26	F07C4.11	F07C4.11	n/a	chrV 7,642,685	contains similarity to Pfam domain PF01549 ShK domain-like contains similarity to Interpro domains IPR000104 (Antifreeze protein, type I), IPR003582 (Metridin-like ShK toxin)
27	R11D1.4	R11D1.4	n/a	chrV 12,713,623	contains similarity to Xenopus laevis Similar to kinesin-like 1.; TR:Q8AVK8
28	C12D5.4	C12D5.4	n/a	chrV 7,672,548
29	srh-139	F57E7.3	n/a	chrV 16,484,653	C. elegans SRH-139 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
30	nhr-241	Y69H2.8	n/a	chrV 18,700,186	C. elegans NHR-241 protein
31	math-10	C16C4.15	n/a	chrII 1,872,348	C. elegans MATH-10 protein; contains similarity to Pfam domain PF00917 MATH domain contains similarity to Interpro domains IPR008974 (TRAF-like), IPR002083 (MATH)
32	srv-36	F57G8.8	n/a	chrV 16,324,110	C. elegans SRV-36 protein ;
33	F59B10.2	F59B10.2	n/a	chrII 10,508,511	contains similarity to Interpro domains IPR003993 (Treacher Collins syndrome, treacle), IPR005819 (Histone H5)
34	M03D4.3	M03D4.3	n/a	chrIV 6,111,524
35	dhs-27	C04F6.5	n/a	chrX 3,415,914	dhs-27 encodes a short-chain dehydrogenase predicted to be mitochondrial.
36	srw-137	H27D07.4	n/a	chrV 2,943,264	C. elegans SRW-137 protein; contains similarity to Interpro domain IPR017452 (GPCR, rhodopsin-like superfamily)
37	F47B10.4	F47B10.4	n/a	chrX 10,891,428	contains similarity to Cyanophage P60 Thioredoxin C3.; TR:Q8W710
38	T02G6.3	T02G6.3	n/a	chrI 11,814,056	contains similarity to Homo sapiens Splice isoform 2 of Q86UP2 Kinectin; ENSEMBL:ENSP00000337744
39	srj-16	T06A1.2	n/a	chrV 1,955,236	C. elegans SRJ-16 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
40	srbc-15	F15E11.10	n/a	chrV 2,346,927	C. elegans SRBC-15 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
41	F46E10.3	F46E10.3	n/a	chrV 6,519,002	contains similarity to Pfam domain PF07735 F-box associated contains similarity to Interpro domain IPR012885 (F-box associated type 2)
42	Y56A3A.18	Y56A3A.18	n/a	chrIII 11,918,159	Y56A3A.18 encodes an ortholog of S. cerevisiae BUD20 that may suppress tumorous growth in the germline; like PRO-1, -2, and -3, Y56A3A.18 is thought to be required for ribosome biogenesis, suggesting a link between biogenesis in the distal sheath and control of cell division in the germline.
43	ZC13.2	ZC13.2	n/a	chrX 881,854
44	C17B7.12	C17B7.12	n/a	chrV 3,353,590
45	srz-6	T21B4.1	n/a	chrII 12,492,894	C. elegans SRZ-6 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
46	F58E2.3	F58E2.3	n/a	chrIV 3,468,626	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
47	C34D10.1	C34D10.1	n/a	chrX 8,030,420	contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein)
48	F19B10.3	F19B10.3	n/a	chrII 3,664,939
49	C32B5.3	C32B5.3	n/a	chrII 981,863
50	D1022.5	D1022.5	n/a	chrII 7,458,058