UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	col-92	W05B2.6	2.9999999999999998e-36	chrIII 10,982,591	C. elegans COL-92 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) (2)contains similarity to Interpro domains IPR000596 (Cholecystokinin receptor, type A), IPR002486 (Nematode cuticle collagen, N-terminal), IPR000694 (Proline-rich region), IPR008160 (Collagen triple helix repeat)
2	bra-2	F23H11.1	n/a	chrIII 911,744	The bra-2 gene encodes a homolog of the human BMP receptor-associated molecule (BRAM1), paralogous to bra-1, that may act upon the SMA-6 TGF-beta signalling pathway
3	col-94	W05B2.1	2.9999999999999998e-36	chrIII 10,987,216	C. elegans COL-94 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) (2)contains similarity to Interpro domains IPR000596 (Cholecystokinin receptor, type A), IPR002486 (Nematode cuticle collagen, N-terminal), IPR000694 (Proline-rich region), IPR008160 (Collagen triple helix repeat)
4	col-159	F57B1.3	0.003	chrV 13,198,753	C. elegans COL-159 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) (3)contains similarity to Interpro domains IPR002952 (Eggshell protein), IPR001419 (HMW glutenin), IPR002486 (Nematode cuticle collagen, N-terminal), IPR000694 (Proline-rich region), IPR008160 (Collagen triple helix repeat), IPR013286 (Annexin, type VII)
5	col-93	W05B2.5	2e-35	chrIII 10,984,961	C. elegans COL-93 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) (2)contains similarity to Interpro domains IPR000596 (Cholecystokinin receptor, type A), IPR002486 (Nematode cuticle collagen, N-terminal), IPR000694 (Proline-rich region), IPR008160 (Collagen triple helix repeat)
6	F11E6.3	F11E6.3	n/a	chrIV 17,471,246	contains similarity to Interpro domain IPR009148 (Streptococcal non-M secreted SibA)
7	ZK512.7	ZK512.7	n/a	chrIII 9,138,295
8	col-80	C09G5.5	n/a	chrII 10,707,668	C. elegans COL-80 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) (3)contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR000694 (Proline-rich region), IPR008160 (Collagen triple helix repeat), IPR013286 (Annexin, type VII)
9	col-39	C09G5.4	n/a	chrII 10,705,382	col-39 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens; the amino- and carboxyl-terminal cysteine-rich regions of COL-39 are most closely related to those of COL-8, COL-19, and COL-35.
10	sra-25	T26E3.9	n/a	chrI 12,687,150	C. elegans SRA-25 protein; contains similarity to Pfam domain PF02117 C.elegans Sra family integral membrane protein contains similarity to Interpro domains IPR003945 (NADH-plastoquinone oxidoreductase, chain 5), IPR000344 (Nematode chemoreceptor, Sra)
11	col-13	F15H10.2	0.0002	chrV 10,421,363	col-13 encodes a collagen which is expressed in all stages of development, like sqt-3 (col-1), col-3, col-10, col-11, col-12, and col-14; collagen genes with this expression profile may be specifically required to construct the L1 cuticle (and, perhaps, less specifically required for cuticles at other stages); the amino- and carboxyl-terminal cysteine-rich regions of COL-13 are most closely related to those of COL-6, COL-12, COL-14, COL-36, and COL-40.
12	glh-1	T21G5.3	n/a	chrI 6,856,107	glh-1 encodes a putative DEAD-box RNA helicase that contains four CCHC zinc fingers and is homologous to Drosophila VASA, a germ-line-specific, ATP-dependent RNA helicase; at permissive temperature, GLH-1 is required redundantly with GLH-4 for proper germ-line development and fertility, specifically for regulating the normal extent of germ-line proliferation, oogenesis, and the production of functional sperm; GLH-1 activity is also likely required for the wild-type morphology of P granules and for localization of several protein components, such as PGL-1, but not for accumulation of P granule mRNAs; GLH-1 interacts in vivo with CSN-5, a COP9 signalosome component, and in vitro with itself and with KGB-1, a JNK-like MAP kinase, ZYX-1, a LIM domain-containing zyxin homologue, and GLH-3; GLH-1 is a constitutive P granule component and thus, with the exception of mature sperm, is expressed in germ cells at all stages of development; consistent with its P granule localization, GLH-1 is cytoplasmic in oocytes and the early embryo, while perinuclear in all later developmental stages as well as in the distal and medial regions of the hermaphrodite gonad; GLH-1 is also expressed in males.
13	col-19	ZK1193.1	n/a	chrX 422,242	col-19 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies) that is required for normal structure of the alae; expressed during the L2-to-dauer and L4-to-adult molts with strongest expression in adult animals.
14	col-142	T15B7.4	n/a	chrV 6,831,692	C. elegans COL-142 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) (3)contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR000694 (Proline-rich region), IPR008160 (Collagen triple helix repeat)
15	col-143	T15B7.3	n/a	chrV 6,836,152	C. elegans COL-143 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) (3)contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR000694 (Proline-rich region), IPR008160 (Collagen triple helix repeat)
16	col-133	F52B11.4	6e-34	chrIV 14,098,828	C. elegans COL-133 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) (2)contains similarity to Interpro domains IPR000596 (Cholecystokinin receptor, type A), IPR002486 (Nematode cuticle collagen, N-terminal), IPR000694 (Proline-rich region), IPR008160 (Collagen triple helix repeat)
17	T26E4.5	T26E4.5	n/a	chrV 15,787,827	contains similarity to Interpro domain IPR008996 ()
18	col-130	F08G5.4	n/a	chrIV 12,427,979	C. elegans COL-130 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) (3)contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR000694 (Proline-rich region), IPR008160 (Collagen triple helix repeat)
19	tyr-2	K08E3.1	n/a	chrIII 13,745,634	C. elegans TYR-2 protein; contains similarity to Pfam domains PF00264 (Common central domain of tyrosinase) , PF01549 (ShK domain-like) (2)contains similarity to Interpro domains IPR008922 (Di-copper centre-containing), IPR002227 (Tyrosinase), IPR003582 (Metridin-like ShK toxin)
20	fbxa-131	W04E12.1	n/a	chrV 19,734,294	C. elegans FBXA-131 protein; contains similarity to Pfam domain PF01827 FTH domain contains similarity to Interpro domain IPR002900 (Protein of unknown function DUF38, Caenorhabditis species)
21	col-179	C34F6.3	n/a	chrX 11,201,934	C. elegans COL-179 protein; contains similarity to Pfam domain PF01391 Collagen triple helix repeat (20 copies) contains similarity to Interpro domains IPR000596 (Cholecystokinin receptor, type A), IPR000694 (Proline-rich region), IPR008160 (Collagen triple helix repeat)
22	F57F5.1	F57F5.1	n/a	chrV 12,003,793	contains similarity to Pfam domain PF00112 Papain family cysteine protease contains similarity to Interpro domains IPR013128 (Peptidase C1A, papain), IPR000169 (Peptidase, cysteine peptidase active site), IPR000668 (Peptidase C1A, papain C-terminal)
23	F32D1.2	F32D1.2	n/a	chrV 4,346,245	contains similarity to Pfam domain PF04627 Mitochondrial ATP synthase epsilon chain contains similarity to Interpro domain IPR006721 (ATPase, F1 complex, epsilon subunit, mitochondrial)
24	F54D5.4	F54D5.4	n/a	chrII 11,570,295	contains similarity to Haemonchus contortus NIM-2 protein.; TR:Q4QYX5
25	elo-6	F41H10.8	n/a	chrIV 5,387,627	The elo-6 gene encodes a paralog of elo-1 and elo-2, each of which encodes a polyunsaturated fatty acid (PUFA) elongase; ELO-6 may be required for a normally high growth rate.
26	col-38	F54C9.4	n/a	chrII 8,568,492	col-38 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies) required for normal body morphology.
27	dct-16	Y38H6C.1	n/a	chrV 20,493,883	C. elegans DCT-16 protein ;
28	col-146	T06E4.6	n/a	chrV 9,630,449	C. elegans COL-146 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) (3)contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR000694 (Proline-rich region), IPR008160 (Collagen triple helix repeat)
29	F55H12.4	F55H12.4	n/a	chrI 8,893,719	contains similarity to Brugia malayi 24 kDa secreted protein.; TR:O76497
30	col-91	F09G8.6	n/a	chrIII 8,262,929	col-91 encodes a cuticle collagen; loss of col-91 via large-scale RNAi results in no obvious defects.
31	C16A11.3	C16A11.3	n/a	chrII 4,231,931	contains similarity to Pfam domains PF04435 (Domain of unknown function (DUF545)) , PF00069 (Protein kinase domain) , PF00628 (PHD-finger) contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR006570 (SPK), IPR002290 (Serine/threonine protein kinase), IPR001965 (Zinc finger, PHD-type), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related), IPR011011 (Zinc finger, FYVE/PHD-type)
32	R06C7.1	R06C7.1	n/a	chrI 7,237,084	contains similarity to Pfam domains PF02170 (PAZ domain) , PF02171 (Piwi domain) contains similarity to Interpro domains IPR003165 (Stem cell self-renewal protein Piwi), IPR003100 (Argonaute and Dicer protein, PAZ), IPR000694 (Proline-rich region), IPR012337 (Polynucleotidyl transferase, Ribonuclease H fold)
33	R13H4.3	R13H4.3	n/a	chrV 11,834,560	contains similarity to Pfam domain PF00328 Histidine acid phosphatase contains similarity to Interpro domain IPR000560 (Histidine acid phosphatase)
34	rec-8	W02A2.6	n/a	chrIV 13,351,138	rec-8 encodes a meiosis-specific cohesin complex subunit orthologous to Saccharomyces cerevisiae and Schizosaccharomyces pombe Rec8p; REC-8 is essential for pairing of homologoues and sister chromatids during meiosis and thus for proper chromosome disjunction; in the germline, REC-8 associates with chromatin of transition zone nuclei, and co-localizes with SMC-1 along the longitudinal axes of synapsed chromosomes at pachytene and in a cruciform pattern at diakinesis; REC-8 localization to chromatin is dependent upon TIM-1, a HEAT/Armadillo repeat-containing protein related to Drosophila TIMELESS, and additionally, REC-8 and SCC-3 are mutually required for chromatin localization; REC-8 cleavage and degradation during meiosis I is dependent on the AIR-2 aurora-like kinase and during meiosis II on AIR-2 and the PLK-1 polo-like kinase.
35	col-150	B0024.2	n/a	chrV 10,294,098	C. elegans COL-150 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) (3)contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR000694 (Proline-rich region), IPR008161 (Collagen helix repeat), IPR008160 (Collagen triple helix repeat)
36	col-62	C15A11.6	n/a	chrI 7,403,843	C. elegans COL-62 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) (3)contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR000694 (Proline-rich region), IPR008160 (Collagen triple helix repeat), IPR013286 (Annexin, type VII)
37	C47E8.4	C47E8.4	n/a	chrV 14,684,638	contains similarity to Pfam domain PF04921 XAP5 protein contains similarity to Interpro domains IPR007005 (XAP5 protein), IPR000533 (Tropomyosin)
38	col-154	F55C10.2	0.0000000000002	chrV 11,385,847	C. elegans COL-154 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) (2)contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR000694 (Proline-rich region), IPR008160 (Collagen triple helix repeat)
39	lys-4	F58B3.1	n/a	chrIV 11,622,253	C. elegans LYS-4 protein; contains similarity to Pfam domain PF01183 Glycosyl hydrolases family 25 contains similarity to Interpro domains IPR017853 (Glycoside hydrolase, catalytic core), IPR013781 (Glycoside hydrolase, subgroup, catalytic core), IPR002053 (Glycoside hydrolase, family 25)
40	ZK1320.3	ZK1320.3	n/a	chrII 9,659,772
41	col-155	F55C10.3	0.0000000000005	chrV 11,389,359	C. elegans COL-155 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) (2)contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR000694 (Proline-rich region), IPR008160 (Collagen triple helix repeat)
42	F49F1.5	F49F1.5	n/a	chrIV 4,119,922	contains similarity to Pfam domain PF01549 ShK domain-like contains similarity to Interpro domain IPR003582 (Metridin-like ShK toxin)
43	dpf-5	R11E3.8	n/a	chrIV 4,804,689	dpf-5 encodes a putative acylamino-acid-releasing enzyme (AARE; EC 3.4.19.1), orthologous to human APEH, with no obvious function in mass RNAi assays.
44	C35E7.1	C35E7.1	n/a	chrI 10,848,430
45	syp-1	F26D2.2	n/a	chrV 16,406,704	C. elegans SYP-1 protein ; contains similarity to Paramecium tetraurelia Chromosome undetermined scaffold_7, whole genome shotgun sequence.; TR:A0DYW0
46	lys-2	Y22F5A.5	n/a	chrV 10,280,860	lys-2 is one of ten C. elegans lysozyme genes; as such, lys-2 can be predicted to have a role in lysozymal function including immune function.
47	col-157	T11F9.9	0.0000000000006	chrV 11,484,503	C. elegans COL-157 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) (2)contains similarity to Interpro domains IPR000381 (Inhibin, beta B subunit), IPR002486 (Nematode cuticle collagen, N-terminal), IPR000694 (Proline-rich region), IPR008160 (Collagen triple helix repeat)
48	H11L12.1	H11L12.1	n/a	chrX 17,710,993
49	ZK829.4	ZK829.4	n/a	chrIV 11,954,203	ZK829.4 is orthologous to the human gene GLYCINE DECARBOXYLASE PRECURSOR (GLUD1; OMIM:238300), which when mutated leads to disease.
50	C04F12.7	C04F12.7	n/a	chrI 9,696,226	contains similarity to Legionella pneumophila CITA.; TR:O54543