UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	T26H2.7	T26H2.7	0	chrV 19,220,389	contains similarity to Pfam domain PF01757 Acyltransferase family contains similarity to Interpro domain IPR002656 (Acyltransferase 3)
2	srxa-8	R04D3.10	n/a	chrX 13,307,985	C. elegans SRXA-8 protein; contains similarity to Pfam domain PF03383 Caenorhabditis serpentine receptor-like protein, class xa contains similarity to Interpro domain IPR005047 (Protein of unknown function DUF286, G protein-coupled receptor-like putative Caenorhabditis species)
3	C54E10.3	C54E10.3	n/a	chrV 18,812,207	contains similarity to Interpro domain IPR017452 (GPCR, rhodopsin-like superfamily)
4	C55C2.3	C55C2.3	n/a	chrI 2,561,372
5	fkh-3	C29F7.4	n/a	chrX 13,422,576	fkh-3 encodes one of 15 C. elegans forkhead transcription factors; loss of fkh-3 activity via RNAi, either singly or in combination with the closely related fkh-4 and fkh-5 genes, results in no obvious abnormalities, suggesting functional redundancy with other genes; an FKH-3 reporter fusion is expressed in most, but not all, cells of the early embryo from the 20- to the 200-cell stage.
6	F20D6.10	F20D6.10	n/a	chrV 8,193,961	contains similarity to Homo sapiens Protein FAM133A; ENSEMBL:ENSP00000318974
7	fbxa-201	T08B1.5	n/a	chrV 1,976,339	C. elegans FBXA-201 protein ;
8	F07F6.1	F07F6.1	n/a	chrII 5,439,042	contains similarity to Interpro domain IPR012677 (Nucleotide-binding, alpha-beta plait)
9	W06G6.11	W06G6.11	n/a	chrV 16,648,635	contains similarity to Mus musculus Calsyntenin-1 precursor.; SW:CLS1_MOUSE
10	F37A4.5	F37A4.5	n/a	chrIII 6,712,464	contains similarity to Pfam domain PF01398 Mov34/MPN/PAD-1 family contains similarity to Interpro domains IPR000555 (Mov34/MPN/PAD-1), IPR006162 (Phosphopantetheine attachment site), IPR003639 (Mov34-1)
11	Y43C5A.3	Y43C5A.3	n/a	chrIV 10,274,690	contains similarity to Staphylococcus aureus Staphylococcal secretory antigen ssaA2 precursor.; SW:Q5HDQ9
12	R09A8.5	R09A8.5	n/a	chrX 12,639,412	contains similarity to Varroa destructor NADH dehydrogenase subunit 4L.; TR:Q8HCK4
13	scrt-1	C55C2.1	n/a	chrI 2,569,754	C. elegans SCRT-1 protein; contains similarity to Pfam domain PF00096 Zinc finger, C2H2 type contains similarity to Interpro domains IPR015880 (Zinc finger, C2H2-like), IPR007086 (Zinc finger, C2H2-subtype), IPR013087 (Zinc finger, C2H2-type/integrase, DNA-binding), IPR007087 (Zinc finger, C2H2-type)
14	F11C1.4	F11C1.4	n/a	chrX 12,979,059	contains similarity to Drosophila melanogaster Flybase gene name is CG9186-PA;; FLYBASE:CG9186
15	gbh-2	M05D6.7	n/a	chrII 8,486,654	gbh-2 encodes an ortholog of human gamma butyrobetaine hydroxilase 2 involved in carnitine biosynthesis; RNA interference of gbh-2 results in malformation of the gonad and accumulation of fat in the pseudocoelomic cavity and in intestinal cells; the GBH-2-GFP fusion protein is predominantly expressed in intestinal cells from early embryogenesis.
16	C54G4.5	C54G4.5	n/a	chrI 7,996,207
17	mab-9	T27A1.6	n/a	chrII 518,813	mab-9 encodes a member of the T-box family of transcriptional regulators containing a 200-amino acid T-box DNA-binding domain most similar to mouse Brachyury; mab-9 is involved in hindgut and male tail development, specifically affecting the fate of two posterior blast cells in the hindgut, B and F; in the male this results in a grossly abnormal tail lacking spicules, and renders them incapable of mating; in the hermaphrodite this results in hindgut defects; mab-9 may also be part of a network of T-box genes that includes tbx-8, tbx-9 and vab-7 and is important for the correct patterning of posterior cells in the developing embryo; mab-9 affects movement to some extent though the basis for this defect is unknown; MAB-9 localizes to the nucleus of B and F and their descendents during development.
18	F09C3.2	F09C3.2	n/a	chrI 14,273,068	contains similarity to Pfam domain PF00702 haloacid dehalogenase-like hydrolase contains similarity to Interpro domains IPR005833 (Haloacid dehydrogenase/epoxide hydrolase), IPR005834 (Haloacid dehalogenase-like hydrolase)
19	Y75B8A.23	Y75B8A.23	n/a	chrIII 12,250,714	contains similarity to Homo sapiens Hypothetical protein; ENSEMBL:ENSP00000299601
20	cnc-4	R09B5.9	n/a	chrV 1,447,465	cnc-4 encodes one of six C. elegans caenacin peptides; cnc-4 expression is strongly induced after infection by the fungus Drechmeria coniospora, suggesting that it functions as a secreted antimicrobial peptide in the innate immune response.
21	F16B4.7	F16B4.7	n/a	chrV 1,585,902	contains similarity to Drosophila melanogaster Flybase gene name is CG7294-PA;; FLYBASE:CG7294
22	sra-21	F28C12.5	n/a	chrI 12,700,219	C. elegans SRA-21 protein; contains similarity to Pfam domain PF02117 C.elegans Sra family integral membrane protein contains similarity to Interpro domain IPR000344 (Nematode chemoreceptor, Sra)
23	fbxa-44	F09C6.2	n/a	chrV 16,889,957	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
24	F38A5.6	F38A5.6	n/a	chrIV 6,596,738	contains similarity to Pfam domain PF03114 BAR domain contains similarity to Interpro domain IPR004148 (BAR)
25	F23C8.1	F23C8.1	n/a	chrI 2,447,555
26	srbc-14	T05E12.2	n/a	chrV 17,071,071	C. elegans SRBC-14 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
27	R07E3.7	R07E3.7	n/a	chrX 10,343,094	contains similarity to Borrelia burgdorferi Outer surface protein C (Fragment).; TR:Q93Q85
28	W09G12.7	W09G12.7	n/a	chrIV 1,230,204	contains similarity to Interpro domains IPR005819 (Histone H5), IPR002038 (Osteopontin)
29	F40F9.3	F40F9.3	n/a	chrV 9,715,769	contains similarity to Interpro domain IPR001478 (PDZ/DHR/GLGF)
30	F28H7.4	F28H7.4	n/a	chrV 10,746,917	contains similarity to Interpro domain IPR011893 (SelT/selW/selH selenoprotein)
31	W03F9.9	W03F9.9	n/a	chrV 139,558	contains similarity to Pfam domain PF00106 short chain dehydrogenase contains similarity to Interpro domains IPR003560 (2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase), IPR002347 (Glucose/ribitol dehydrogenase), IPR002198 (Short-chain dehydrogenase/reductase SDR), IPR016040 (NAD(P)-binding)
32	T26G10.5	T26G10.5	n/a	chrIII 9,426,015	contains similarity to Streptococcus pyogenes Hypothetical protein SPy0952.; TR:Q9A032
33	C17H12.5	C17H12.5	n/a	chrIV 6,816,742	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000387 (Protein-tyrosine phosphatase)
34	clec-119	F47F6.5	n/a	chrII 1,256,978	C. elegans CLEC-119 protein; contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
35	clec-138	F35D11.9	n/a	chrII 4,619,352	C. elegans CLEC-138 protein; contains similarity to Interpro domain IPR016187 (C-type lectin fold)
36	ZK550.5	ZK550.5	n/a	chrIV 17,258,404	contains similarity to Pfam domain PF05721 Phytanoyl-CoA dioxygenase (PhyH) contains similarity to Interpro domain IPR008775 (Phytanoyl-CoA dioxygenase)
37	F43G9.8	F43G9.8	n/a	chrI 8,618,137	contains similarity to Dugesia japonica DjFGFR1.; TR:Q8MY86
38	numr-2	F08F8.1	n/a	chrIII 7,365,432	C. elegans NUMR-2 protein ;
39	F35E2.5	F35E2.5	n/a	chrI 11,742,773	contains similarity to Pfam domain PF03761 Domain of unknown function (DUF316) contains similarity to Interpro domain IPR005514 (Protein of unknown function DUF316)
40	fipr-24	C37A5.8	n/a	chrI 14,157,799	C. elegans FIPR-24 protein ;
41	dct-7	F15E6.8	n/a	chrIV 4,290,416	C. elegans DCT-7 protein ;
42	ZK1128.3	ZK1128.3	n/a	chrIII 10,117,815	contains similarity to Mus musculus 2410017P07Rik protein.; TR:Q9CZE0
43	far-4	F15B9.2	n/a	chrV 12,999,023	far-4 encodes a fatty acid and retinol-binding protein, paralogous to FAR-3 and FAR-5 and distantly homologous to FAR proteins of parasitic nematodes; FAR-4 binds lipids in vitro; far-4 is transcribed at highest levels in the fourth larval stage, and is dispensable for viability and gross morphology in mass RNAi assays.
44	W01B6.5	W01B6.5	n/a	chrIV 10,077,459	contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related), IPR000980 (SH2 motif)
45	ZK666.8	ZK666.8	n/a	chrII 10,492,235	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
46	C17C3.5	C17C3.5	n/a	chrII 5,552,099	contains similarity to Pfam domain PF01827 FTH domain contains similarity to Interpro domain IPR002900 (Protein of unknown function DUF38, Caenorhabditis species)
47	ceh-48	C17H12.9	n/a	chrIV 6,813,828	ceh-48 encodes a ONECUT class CUT homeobox protein with a single N-terminal cut domain; the cut domain may be a compact DNA-binding domain composed of alpha helices; CEH-48 is strongly affiliated with, and may be orthologous to, Drosophila ONECUT and mammalian HNF6 proteins; ceh-48 has no obvious function in mass RNAi assays.
48	F22B7.3	F22B7.3	n/a	chrIII 8,649,167
49	T07E3.2	T07E3.2	n/a	chrIII 6,907,721
50	cnc-7	F53H2.2	n/a	chrV 20,389,778	C. elegans CNC-7 protein ;