UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	T26E4.9	T26E4.9	4.0000000000000004e-23	chrV 15,799,338	contains similarity to Mus musculus Insulin-like growth factor binding protein 1 precursor (IGFBP-1)s(IBP-1) (IGF-binding protein 1).; SW:IBP1_MOUSE
2	sra-25	T26E3.9	n/a	chrI 12,687,150	C. elegans SRA-25 protein; contains similarity to Pfam domain PF02117 C.elegans Sra family integral membrane protein contains similarity to Interpro domains IPR003945 (NADH-plastoquinone oxidoreductase, chain 5), IPR000344 (Nematode chemoreceptor, Sra)
3	F35B3.4	F35B3.4	n/a	chrX 17,020,129	contains similarity to Pfam domain PF01682 DB module contains similarity to Interpro domain IPR002602 (Protein of unknown function DB)
4	F23F1.2	F23F1.2	n/a	chrII 34,690	contains similarity to Pfam domain PF00036 EF hand contains similarity to Interpro domains IPR011992 (EF-Hand type), IPR002048 (Calcium-binding EF-hand)
5	rnh-1.3	C04F12.9	n/a	chrI 9,710,453	C. elegans RNH-1.3 protein; contains similarity to Pfam domain PF00075 RNase H contains similarity to Interpro domains IPR012337 (Polynucleotidyl transferase, Ribonuclease H fold), IPR002156 (Ribonuclease H)
6	C27D9.2	C27D9.2	n/a	chrII 4,756,176	contains similarity to Pfam domain PF01060 Transthyretin-like family contains similarity to Interpro domain IPR001534 (Transthyretin-like)
7	col-146	T06E4.6	n/a	chrV 9,630,449	C. elegans COL-146 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) (3)contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR000694 (Proline-rich region), IPR008160 (Collagen triple helix repeat)
8	cut-4	E04D5.3	n/a	chrII 10,437,905	C. elegans CUT-4 protein; contains similarity to Pfam domain PF00100 Zona pellucida-like domain contains similarity to Interpro domains IPR000694 (Proline-rich region), IPR001507 (Endoglin/CD105 antigen)
9	zig-6	T03G11.8	n/a	chrX 5,187,948	zig-6 encodes a predicted secreted protein that is a member of the immunoglobulin superfamily of proteins; loss of zig-6 activity in large-scale RNAi screens results in a Clear phenotype; a zig-6::gfp reporter fusion is expressed in anterior and posterior body wall muscle.
10	hlh-15	C43H6.8	n/a	chrX 2,413,123	C. elegans HLH-15 protein; contains similarity to Pfam domain PF00010 Helix-loop-helix DNA-binding domain contains similarity to Interpro domains IPR001092 (Basic helix-loop-helix dimerisation region bHLH), IPR011598 (Helix-loop-helix DNA-binding)
11	F47B8.5	F47B8.5	n/a	chrV 14,326,311	contains similarity to Pfam domain PF01482 Domain of unknown function DUF13 contains similarity to Interpro domains IPR002485 (Protein of unknown function DUF13), IPR000694 (Proline-rich region), IPR000976 (Wilm's tumour protein), IPR003071 (Orphan nuclear receptor, HMR type)
12	ZK593.3	ZK593.3	n/a	chrIV 10,917,060	contains similarity to Bacillus cereus YndE protein (Spore germination protein BB).; TR:Q9K337
13	C50B6.7	C50B6.7	n/a	chrV 13,323,656	contains similarity to Pfam domains PF02806 (Alpha amylase, C-terminal all-beta domain) , PF00128 (Alpha amylase, catalytic domain) contains similarity to Interpro domains IPR006046 (Glycoside hydrolase family 13), IPR017853 (Glycoside hydrolase, catalytic core), IPR006048 (Alpha-amylase, C-terminal all beta), IPR013781 (Glycoside hydrolase, subgroup, catalytic core), IPR006047 (Glycosyl hydrolase, family 13, catalytic region), IPR006589 (Glycosyl hydrolase, family 13, subfamily, catalytic region), IPR013780 (Glycosyl hydrolase, family 13, all-beta)
14	F32H5.1	F32H5.1	n/a	chrV 13,357,051	contains similarity to Pfam domain PF00112 Papain family cysteine protease contains similarity to Interpro domains IPR013128 (Peptidase C1A, papain), IPR000668 (Peptidase C1A, papain C-terminal)
15	C33H5.2	C33H5.2	n/a	chrIV 7,806,489	contains similarity to Pfam domain PF01697 Domain of unknown function contains similarity to Interpro domains IPR008167 (Protein of unknown function DUF23, C-terminal), IPR008166 (Protein of unknown function DUF23)
16	his-15	ZK131.9	n/a	chrII 13,818,464	his-15 encodes an H2B histone.
17	F55H12.4	F55H12.4	n/a	chrI 8,893,719	contains similarity to Brugia malayi 24 kDa secreted protein.; TR:O76497
18	ZK512.7	ZK512.7	n/a	chrIII 9,138,295
19	R07E4.3	R07E4.3	n/a	chrX 5,953,576	contains similarity to Pfam domain PF02939 UcrQ family contains similarity to Interpro domain IPR004205 (UcrQ)
20	lys-5	F58B3.2	n/a	chrIV 11,624,888	C. elegans LYS-5 protein; contains similarity to Pfam domain PF01183 Glycosyl hydrolases family 25 contains similarity to Interpro domains IPR017853 (Glycoside hydrolase, catalytic core), IPR013781 (Glycoside hydrolase, subgroup, catalytic core), IPR002053 (Glycoside hydrolase, family 25)
21	F35F10.6	F35F10.6	n/a	chrV 3,288,593	contains similarity to Pfam domain PF06162 Caenorhabditis elegans protein of unknown function (DUF976) contains similarity to Interpro domains IPR010381 (Protein of unknown function DUF976, Caenorhabditis species), IPR016125 (Peptidase C15, pyroglutamyl peptidase I-like)
22	F07C6.2	F07C6.2	n/a	chrIV 12,791,374	contains similarity to Amblyomma hebraeum 9.8 kDa basic protein.; TR:Q9GPM1
23	lys-2	Y22F5A.5	n/a	chrV 10,280,860	lys-2 is one of ten C. elegans lysozyme genes; as such, lys-2 can be predicted to have a role in lysozymal function including immune function.
24	H11L12.1	H11L12.1	n/a	chrX 17,710,993
25	C06E4.6	C06E4.6	n/a	chrIV 7,257,716	contains similarity to Pfam domain PF00106 short chain dehydrogenase contains similarity to Interpro domains IPR000103 (Pyridine nucleotide-disulphide oxidoreductase, class-II), IPR003560 (2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase), IPR002347 (Glucose/ribitol dehydrogenase), IPR002198 (Short-chain dehydrogenase/reductase SDR), IPR016040 (NAD(P)-binding)
26	F32D1.2	F32D1.2	n/a	chrV 4,346,245	contains similarity to Pfam domain PF04627 Mitochondrial ATP synthase epsilon chain contains similarity to Interpro domain IPR006721 (ATPase, F1 complex, epsilon subunit, mitochondrial)
27	C30H6.5	C30H6.5	n/a	chrIV 17,373,653	contains similarity to Pfam domain PF00024 PAN domain contains similarity to Interpro domains IPR003609 (Apple-like), IPR003014 (N/apple PAN)
28	R13H4.6	R13H4.6	n/a	chrV 11,864,309	contains similarity to Archaeoglobus fulgidus Putative protease La homolog type (EC 3.4.21.-).; SW:O29883
29	C40H1.2	C40H1.2	n/a	chrIII 9,318,561	contains similarity to Eikenella corrodens Cpn60 (Fragment).; TR:Q8KP64
30	C06E8.5	C06E8.5	n/a	chrIII 7,003,767	contains similarity to Pfam domain PF02886 LBP / BPI / CETP family, C-terminal domain contains similarity to Interpro domain IPR001124 (Lipid-binding serum glycoprotein)
31	C42D4.3	C42D4.3	n/a	chrIV 7,179,810	contains similarity to Pfam domain PF01682 DB module contains similarity to Interpro domain IPR002602 (Protein of unknown function DB)
32	F46B6.8	F46B6.8	n/a	chrV 9,792,368	contains similarity to Pfam domains PF04083 (ab-hydrolase associated lipase region) , PF00561 (alpha/beta hydrolase fold) contains similarity to Interpro domains IPR006693 (AB-hydrolase associated lipase region), IPR000073 (Alpha/beta hydrolase fold-1), IPR008262 (Lipase, active site)
33	rad-54	W06D4.6	n/a	chrI 9,067,667	rad-54 is orthologous to the human gene RAD54 (RAD54L; OMIM:603615), which when mutated leads to disease.
34	pgl-2	B0523.3	n/a	chrIII 8,672,707	pgl-2 encodes a novel protein of 532 amino acids that, in C. elegans, is one of three PGL protein family members; PGL-2 associates with P granules during postembryonic development; PGL-2 interacts with PGL-1, an additional P granule component, in yeast two-hybrid assays, but neither protein is required for proper localization of the other.
35	his-11	ZK131.5	n/a	chrII 13,821,955	his-11 encodes an H2B histone; by homology, HIS-11 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-11 is a replication-dependent histone locus that resides in the HIS3 cluster on chromosome II.
36	W06D4.4	W06D4.4	n/a	chrI 9,061,846	contains similarity to Interpro domain IPR014644 (Protein arginine N-methyltransferase)
37	ZC204.12	ZC204.12	n/a	chrII 1,656,785	contains similarity to Pfam domain PF00651 BTB/POZ domain contains similarity to Interpro domains IPR011333 (BTB/POZ fold), IPR013069 (BTB/POZ)
38	sms-2	F53H8.4	n/a	chrX 946,855	C. elegans SMS-2 protein ; contains similarity to Aedes aegypti Spingomyelin synthetase.; TR:Q17C34
39	F10E7.3	F10E7.3	n/a	chrII 7,124,926
40	ZK836.2	ZK836.2	n/a	chrV 12,199,854	contains similarity to Pfam domains PF02779 (Transketolase, pyrimidine binding domain) , PF00676 (Dehydrogenase E1 component) contains similarity to Interpro domains IPR011603 (2-oxoglutarate dehydrogenase, E1 component), IPR005475 (Transketolase, central region), IPR001017 (Dehydrogenase, E1 component)
41	fbxa-151	ZC47.7	n/a	chrIII 1,266,254	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
42	let-502	C10H11.9	n/a	chrI 4,741,246	let-502 encodes a Rho-binding Ser/Thr kinase orthologous to human myotonic dystrophy kinase (DM-kinase); let-502 is required for early embryonic cleavages, embryonic elongation, migration of hypodermal P cells to a ventral position, normal spermathecal contraction, and fertility; LET-502 is required for hypodermal cells to properly change their shape, and is expressed in those cells, during embryonic elongation; let-502 mutations are suppressed by mel-11 mutations, and the pattern of LET-502 expression in the embryonic epidermis and the spermatheca is opposite to that of MEL-11, indicating that LET-502 and MEL-11 have opposing functions (presumably tissue contraction and relaxation); MEL-11 requires LET-502 (along with the nonmuscle myosin NMY-1) for proper localization.
43	nhr-106	T01G6.4	n/a	chrV 490,539	nhr-106 encodes a nuclear receptor that is most highly conserved amongst nematode species.
44	B0495.2	B0495.2	n/a	chrII 7,700,550	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR008351 (JNK MAP kinase), IPR002290 (Serine/threonine protein kinase), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core)
45	W06B4.2	W06B4.2	n/a	chrII 4,469,593	contains similarity to Pfam domain PF01869 BadF/BadG/BcrA/BcrD ATPase family contains similarity to Interpro domain IPR002731 (ATPase, BadF/BadG/BcrA/BcrD type)
46	K12D9.12	K12D9.12	n/a	chrV 3,021,212	contains similarity to Pfam domain PF01030 Receptor L domain contains similarity to Interpro domain IPR000494 (EGF receptor, L domain)
47	C34C12.7	C34C12.7	n/a	chrIII 3,485,435
48	K08C7.6	K08C7.6	n/a	chrIV 10,685,135	contains similarity to Arabidopsis thaliana Tetratricoredoxin.; TR:Q8VWG7
49	F45C12.16	F45C12.16	n/a	chrII 1,737,908	contains similarity to Pfam domain PF01030 Receptor L domain contains similarity to Interpro domain IPR000494 (EGF receptor, L domain)
50	srsx-26	C51E3.1	n/a	chrV 10,149,791	C. elegans SRSX-26 protein; contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR000276 (GPCR, rhodopsin-like)