UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	fbxa-135	T06E6.5	0	chrV 15,402,649	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
2	T26E4.5	T26E4.5	n/a	chrV 15,787,827	contains similarity to Interpro domain IPR008996 ()
3	F52D10.6	F52D10.6	n/a	chrX 11,583,279	contains similarity to Pfam domain PF00169 PH domain contains similarity to Interpro domains IPR000219 (Dbl homology (DH) domain), IPR001849 (Pleckstrin-like), IPR011993 (Pleckstrin homology-type)
4	B0212.1	B0212.1	n/a	chrIV 3,575,057	contains similarity to Pfam domain PF03189 Protein of unknown function, DUF270 contains similarity to Interpro domain IPR004878 (Protein of unknown function DUF270)
5	sre-22	F36D1.2	n/a	chrI 11,284,373	C. elegans SRE-22 protein; contains similarity to Pfam domain PF03125 C. elegans Sre G protein-coupled chemoreceptor contains similarity to Interpro domain IPR004151 (C. elegans Sre G protein-coupled chemoreceptor)
6	ifta-1	C54G7.4	n/a	chrX 5,549,123	C. elegans IFTA-1 protein; contains similarity to Pfam domain PF00400 WD domain, G-beta repeat contains similarity to Interpro domains IPR011046 (WD40 repeat-like), IPR017233 (WD repeat protein 35), IPR001680 (WD40 repeat), IPR015943 (WD40/YVTN repeat-like), IPR011011 (Zinc finger, FYVE/PHD-type)
7	tba-5	F16D3.1	n/a	chrI 8,355,612	tba-5 encodes one of nine C. elegans alpha tubulins; by homology, TBA-5 is predicted to be a component of microtubules; as loss of tba-5 function via RNA-mediated interference (RNAi) does not result in any obvious abnormalities, TBA-5 likely functions redundantly with other alpha tubulins as a basic component of cellular architecture that may play additional roles in processes such as cell division, cell movement, and intracellular transport.
8	C50H2.5	C50H2.5	n/a	chrV 9,919,252	contains similarity to Interpro domains IPR001356 (Homeobox), IPR009057 (Homeodomain-like)
9	T24D5.4	T24D5.4	n/a	chrX 12,597,224	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR017442 (Serine/threonine protein kinase-related)
10	sru-40	R07B5.3	n/a	chrV 9,833,347	C. elegans SRU-40 protein; contains similarity to Pfam domain PF02688 Domain of unknown function DUF215 contains similarity to Interpro domain IPR003839 (Protein of unknown function DUF215)
11	nhr-220	T19H12.8	n/a	chrV 4,883,423	C. elegans NHR-220 protein; contains similarity to Pfam domain PF00105 Zinc finger, C4 type (two domains) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
12	clec-243	Y68A4B.1	n/a	chrV 17,248,138	C. elegans CLEC-243 protein; contains similarity to Pfam domain PF01764 Lipase (class 3) contains similarity to Interpro domains IPR002921 (Lipase, class 3), IPR008262 (Lipase, active site)
13	F37H8.2	F37H8.2	n/a	chrII 11,173,534	contains similarity to Saccharomyces cerevisiae Structural maintenance of chromosomes (SMC) protein; SGD:YOL034W
14	F26A1.7	F26A1.7	n/a	chrIII 4,819,598
15	ckr-1	T23B3.4	n/a	chrI 6,688,888	T23B3.4 encodes a seven transmembrane receptor that is most closely related to the mammalian cholecystokinin receptors; loss of T23B3.4 activity via RNAi, either singly or in combination with another cholecystokinin receptor-encoding gene, Y39A3B.5, has no effect on fat metabolism, however large-scale RNAi screens have reported that T23B3.4(RNAi) results in embryonic lethality and reduced brood sizes; a T23B3.4::GFP reporter is expressed in a subset of nerve ring neurons.
16	nhr-126	F44C8.10	n/a	chrV 2,230,032	nhr-126 encodes a member of the nuclear hormone receptor family.
17	C01C4.2	C01C4.2	n/a	chrX 3,717,428
18	str-141	F47G9.2	n/a	chrV 11,323,048	C. elegans STR-141 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
19	srh-47	T03F7.4	n/a	chrV 11,299,983	C. elegans SRH-47 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domains IPR003002 (7TM chemoreceptor, subfamily 1), IPR006069 (ATPase, P-type cation exchange, alpha subunit)
20	C09B8.5	C09B8.5	n/a	chrX 6,021,639
21	sra-7	AH6.11	n/a	chrII 9,545,368	C. elegans SRA-7 protein; contains similarity to Pfam domain PF02117 C.elegans Sra family integral membrane protein contains similarity to Interpro domain IPR000344 (Nematode chemoreceptor, Sra)
22	sru-47	F36D1.3	n/a	chrI 11,290,448	C. elegans SRU-47 protein; contains similarity to Pfam domain PF02688 Domain of unknown function DUF215 contains similarity to Interpro domains IPR015964 (Cytochrome C oxidase subunit II-like, transmembrane region), IPR003839 (Protein of unknown function DUF215)
23	F16G10.4	F16G10.4	n/a	chrII 2,369,673	contains similarity to Pfam domain PF02343 Domain of unknown function DUF130 contains similarity to Interpro domains IPR003326 (Protein of unknown function DUF130), IPR002371 (Flagellar hook-associated protein)
24	T02H6.10	T02H6.10	n/a	chrII 680,250
25	srh-204	E03D2.3	n/a	chrV 4,239,757	C. elegans SRH-204 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
26	F45F2.6	F45F2.6	n/a	chrV 8,527,305	contains similarity to Pfam domain PF03189 Protein of unknown function, DUF270 contains similarity to Interpro domain IPR004878 (Protein of unknown function DUF270)
27	Y51H1A.7	Y51H1A.7	n/a	chrII 13,897,024	contains similarity to Interpro domains IPR000637 (HMG-I and HMG-Y, DNA-binding), IPR000783 (RNA polymerase, subunit H/Rpb5 C-terminal)
28	C29F9.9	C29F9.9	n/a	chrIII 98,659
29	ceh-24	F55B12.1	n/a	chrV 13,814,273	ceh-24 is orthologous to the human gene SIMILAR TO THYROID TRANSCRIPTION FACTOR 1 (TITF1; OMIM:600635), which when mutated leads to disease.
30	W01C9.2	W01C9.2	n/a	chrII 8,537,366	contains similarity to Chlamydia pneumoniae Probable serine/threonine-protein kinase 1 (EC 2.7.1.37).; SW:PKN1_CHLPN
31	R05H10.5	R05H10.5	n/a	chrII 14,868,296	contains similarity to Pfam domain PF00255 Glutathione peroxidase contains similarity to Interpro domains IPR012336 (Thioredoxin-like fold), IPR012335 (Thioredoxin fold), IPR000889 (Glutathione peroxidase)
32	C02E7.8	C02E7.8	n/a	chrV 4,920,552
33	Y49E10.25	Y49E10.25	n/a	chrIII 12,490,261	contains similarity to Pfam domain PF01764 Lipase (class 3) contains similarity to Interpro domain IPR002921 (Lipase, class 3)
34	F55D12.1	F55D12.1	n/a	chrI 7,884,957	contains similarity to Brachydanio rerio Hypothetical protein.; TR:Q803L4
35	R05D7.3	R05D7.3	n/a	chrI 12,169,337	contains similarity to Interpro domain IPR000085 (Bacterial DNA recombination protein, RuvA)
36	igcm-2	SSSD1.1	n/a	chrX 6,382,121	igcm-2 encodes a protein containing immunoglobulin and fibronectin repeats; igcm-2 promoter::gfp fusions are expressed in the PVT interneuron, in some head neurons, and in the pharynx and intestine.
37	F19B10.1	F19B10.1	n/a	chrII 3,683,855	contains similarity to Gallus gallus Neurofilament medium polypeptide (NF-M) (Neurofilament triplet Msprotein) (160 kDa neurofilament protein).; SW:P16053
38	osm-10	T20H4.1	n/a	chrIII 7,244,451	osm-10 encodes a novel protein conserved amongst several Caenorhabditis species; osm-10 activity is required for normal osmosensory signaling in the ASH sensory neuron; in regulating ASH-mediated osmosensation, osm-10 interacts genetically with eos-1 and eos-2; OSM-10 is expressed in the ASH, ASI, PHA, and PHB sensory neurons beginning just prior to hatching and continuing through larval and adult stages; OSM-10 localizes to cell bodies, sensory processes, and axons.
39	T05A6.5	T05A6.5	n/a	chrII 7,824,034	contains similarity to Pfam domain PF01030 Receptor L domain contains similarity to Interpro domain IPR000494 (EGF receptor, L domain)
40	Y56A3A.11	Y56A3A.11	n/a	chrIII 11,896,407	contains similarity to Pfam domain PF01974 tRNA intron endonuclease, catalytic C-terminal domain contains similarity to Interpro domains IPR006677 (tRNA intron endonuclease, catalytic domain-like), IPR011856 (Endonuclease TnsA, N-terminal/resolvase Hjc/tRNA endonuclease, C-terminal)
41	clec-34	T25E12.8	n/a	chrV 16,736,555	C. elegans CLEC-34 protein; contains similarity to Pfam domain PF00059 Lectin C-type domain contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
42	T28C6.7	T28C6.7	n/a	chrIV 8,828,801	contains similarity to Interpro domain IPR009055 (UvrB, C-terminal UvrC-binding)
43	ttx-3	C40H5.5	n/a	chrX 11,766,841	ttx-3 encodes a LIM homeodomain protein required for functions of the interneuron AIY, including thermosensory behavior and olfactory learning.
44	F11A1.2	F11A1.2	n/a	chrX 10,658,016
45	B0432.1	B0432.1	n/a	chrII 298,462
46	R07G3.8	R07G3.8	n/a	chrII 7,619,307	contains similarity to Pfam domain PF07159 Protein of unknown function (DUF1394) contains similarity to Interpro domain IPR009828 (Protein of unknown function DUF1394)
47	M01G12.10	M01G12.10	n/a	chrI 12,119,338	contains similarity to Homo sapiens Hypothetical protein KIAA0477; ENSEMBL:ENSP00000316434
48	F15D3.7	F15D3.7	n/a	chrI 11,579,107	contains similarity to Pfam domain PF02466 Tim17/Tim22/Tim23 family contains similarity to Interpro domain IPR003397 (Mitochondrial import inner membrane translocase, subunit Tim17/22)
49	E03H4.3	E03H4.3	n/a	chrI 12,406,224	contains similarity to Pfam domain PF01762 Galactosyltransferase contains similarity to Interpro domain IPR002659 (Glycosyl transferase, family 31)
50	sri-9	Y102A5C.29	n/a	chrV 17,002,496	C. elegans SRI-9 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domains IPR003002 (7TM chemoreceptor, subfamily 1), IPR000565 (DNA topoisomerase, type IIA, subunit B)