UCSC C. elegans Gene Sorter

JavaScript is disabled in your web browser

You must have JavaScript enabled in your web browser to use the Genome Browser

UCSC C. elegans Gene Sorter

genome assembly search

sort by display output

#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	gst-9	R05F9.5	4e-116	chrII 4,892,523	gst-9 encodes a predicted glutathione S-transferase; by homology, GST-9 is predicted to play a role in the detoxification of environmental toxins and xenobiotics by transferring glutathione to reactive electrophilic compounds; however, as loss of gst-9 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of GST-9 in C. elegans development and/or behavior is not yet known.
2	bra-2	F23H11.1	n/a	chrIII 911,744	The bra-2 gene encodes a homolog of the human BMP receptor-associated molecule (BRAM1), paralogous to bra-1, that may act upon the SMA-6 TGF-beta signalling pathway
3	msp-74	F09C12.7	n/a	chrII 5,115,201	msp-74 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes.
4	F37A8.1	F37A8.1	n/a	chrIII 3,928,769	contains similarity to Rattus norvegicus Myotonic dystrophy kinase-related Cdc42-binding kinase MRCK-beta.; TR:O54875
5	T08B2.12	T08B2.12	n/a	chrI 6,231,810	contains similarity to Equine herpesvirus 1 Glycoprotein X precursor.; SW:Q6S6W0
6	nspa-1	H12D21.1	n/a	chrV 14,886,813	C. elegans NSPA-1 protein ;
7	nspa-8	W06A7.5	n/a	chrV 14,826,947	C. elegans NSPA-8 protein ;
8	nspd-4	T23B7.1	n/a	chrII 4,842,734	C. elegans NSPD-4 protein; contains similarity to Pfam domain PF05611 Caenorhabditis elegans protein of unknown function (DUF780) contains similarity to Interpro domain IPR008498 (Protein of unknown function DUF780, Caenorhabditis species)
9	C10G11.1	C10G11.1	n/a	chrI 6,307,930
10	C04F12.7	C04F12.7	n/a	chrI 9,696,226	contains similarity to Legionella pneumophila CITA.; TR:O54543
11	sss-1	F32B6.5	n/a	chrIV 9,893,216	C. elegans SSS-1 protein ;
12	C25A8.1	C25A8.1	n/a	chrIV 7,011,175
13	K06A5.2	K06A5.2	n/a	chrI 6,468,758	contains similarity to Pfam domain PF05884 Caenorhabditis elegans protein of unknown function (DUF856) contains similarity to Interpro domains IPR001991 (Sodium:dicarboxylate symporter), IPR008574 (Protein of unknown function DUF856, Caenorhabditis species)
14	clec-79	F47C12.4	n/a	chrIV 3,974,525	C. elegans CLEC-79 protein; contains similarity to Pfam domain PF00059 Lectin C-type domain contains similarity to Interpro domains IPR000538 (Link), IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
15	nspa-9	C40H5.1	n/a	chrX 11,739,026	C. elegans NSPA-9 protein ;
16	C02F5.5	C02F5.5	n/a	chrIII 8,236,454
17	C05C12.5	C05C12.5	n/a	chrIV 11,260,772	contains similarity to Homo sapiens cDNA FLJ10106 fis, clone HEMBA1002569, highly similar to Homo sapiens protein associated with Myc mRNA (Fragment); ENSEMBL:ENSP00000353197
18	F36A4.3	F36A4.3	n/a	chrIV 4,269,952	contains similarity to Pfam domain PF05912 Caenorhabditis elegans protein of unknown function (DUF870) contains similarity to Interpro domain IPR008588 (Protein of unknown function DUF870, Caenorhabditis species)
19	msp-32	R05F9.3	n/a	chrII 4,898,889	msp-32 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; msp-32 has a C. briggsae homolog as predicted by the Wobble Aware Bulk Aligner (WABA); the msp family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes.
20	nspa-3	ZC412.7	n/a	chrV 14,880,465	C. elegans NSPA-3 protein ;
21	C14C11.1	C14C11.1	n/a	chrV 5,664,396
22	F35H8.1	F35H8.1	n/a	chrII 9,552,878	contains similarity to Plasmodium falciparum Hypothetical protein.; TR:Q8ILJ6
23	nspa-5	ZC412.6	n/a	chrV 14,878,391	C. elegans NSPA-5 protein ;
24	ZK938.1	ZK938.1	n/a	chrII 9,830,005	contains similarity to Pfam domain PF00149 Calcineurin-like phosphoesterase contains similarity to Interpro domains IPR004843 (Metallophosphoesterase), IPR006186 (Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase)
25	F47B8.5	F47B8.5	n/a	chrV 14,326,311	contains similarity to Pfam domain PF01482 Domain of unknown function DUF13 contains similarity to Interpro domains IPR002485 (Protein of unknown function DUF13), IPR000694 (Proline-rich region), IPR000976 (Wilm's tumour protein), IPR003071 (Orphan nuclear receptor, HMR type)
26	T25B9.6	T25B9.6	n/a	chrIV 10,759,435	contains similarity to Interpro domain IPR006162 (Phosphopantetheine attachment site)
27	T28H11.7	T28H11.7	n/a	chrIV 5,015,779	contains similarity to Interpro domain IPR004148 (BAR)
28	F36A4.4	F36A4.4	n/a	chrIV 4,267,908	contains similarity to Pfam domain PF05912 Caenorhabditis elegans protein of unknown function (DUF870) contains similarity to Interpro domain IPR008588 (Protein of unknown function DUF870, Caenorhabditis species)
29	ZK1251.1	ZK1251.1	n/a	chrIV 9,683,245	contains similarity to Pfam domains PF00808 (Histone-like transcription factor (CBF/NF-Y) and archaeal histone) , PF00125 (Core histone H2A/H2B/H3/H4) contains similarity to Interpro domains IPR009072 (Histone-fold), IPR007125 (Histone core), IPR002119 (Histone H2A), IPR003958 (Transcription factor CBF/NF-Y/archaeal histone)
30	ssp-9	E03H12.10	n/a	chrIV 4,994,521	C. elegans SSP-9 protein; contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein)
31	C49H3.3	C49H3.3	n/a	chrIV 7,924,622	contains similarity to Xenopus tropicalis UPF0446 protein C12orf31 homolog.; SW:Q6NVR5
32	F08H9.2	F08H9.2	n/a	chrV 14,460,857	contains similarity to Interpro domain IPR004064 (EDG-6 sphingosine 1-phosphate receptor)
33	F32B5.4	F32B5.4	n/a	chrI 2,692,274
34	R09E10.6	R09E10.6	n/a	chrIV 10,293,542	contains similarity to Coturnix coturnix Nectinepsin.; TR:Q90351
35	F17E9.5	F17E9.5	n/a	chrIV 8,346,163
36	msp-79	T13F2.10	n/a	chrIV 9,766,938	msp-79 encodes a member of the major sperm protein family.
37	col-179	C34F6.3	n/a	chrX 11,201,934	C. elegans COL-179 protein; contains similarity to Pfam domain PF01391 Collagen triple helix repeat (20 copies) contains similarity to Interpro domains IPR000596 (Cholecystokinin receptor, type A), IPR000694 (Proline-rich region), IPR008160 (Collagen triple helix repeat)
38	ssq-4	T28H11.1	n/a	chrIV 5,017,101	C. elegans SSQ-4 protein; contains similarity to Interpro domains IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR002952 (Eggshell protein), IPR000817 (Prion protein), IPR000103 (Pyridine nucleotide-disulphide oxidoreductase, class-II), IPR000158 (Cell division protein FtsZ, N-terminal), IPR013286 (Annexin, type VII)
39	C43G2.3	C43G2.3	n/a	chrIV 6,578,783
40	C05B5.2	C05B5.2	n/a	chrIII 9,999,425	contains similarity to Agrobacterium tumefaciens Peptide synthetase.; TR:Q8UBE4
41	W03D8.9	W03D8.9	n/a	chrI 2,785,349	contains similarity to Pfam domain PF05884 Caenorhabditis elegans protein of unknown function (DUF856) contains similarity to Interpro domains IPR001991 (Sodium:dicarboxylate symporter), IPR008574 (Protein of unknown function DUF856, Caenorhabditis species)
42	F36A2.10	F36A2.10	n/a	chrI 8,819,797	contains similarity to Interpro domains IPR000164 (Histone H3), IPR005819 (Histone H5)
43	B0238.9	B0238.9	n/a	chrV 5,276,818	contains similarity to Aedes aegypti Putative uncharacterized protein.; TR:Q16RM2
44	C09B9.2	C09B9.2	n/a	chrIV 5,030,143
45	ZC317.6	ZC317.6	n/a	chrV 5,467,199
46	sss-2	F47B8.11	n/a	chrV 14,346,480	C. elegans SSS-2 protein ;
47	ssp-11	T28H11.6	n/a	chrIV 4,999,632	C. elegans SSP-11 protein; contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein)
48	C41G7.6	C41G7.6	n/a	chrI 9,526,981	contains similarity to Paramecium tetraurelia Chromosome undetermined scaffold_96, whole genome shotgun sequence.; TR:A0EH68
49	C45G9.9	C45G9.9	n/a	chrIII 5,055,142	contains similarity to Interpro domains IPR000694 (Proline-rich region), IPR005819 (Histone H5)
50	msp-49	C34F11.6	n/a	chrII 5,194,543	msp-49 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes.