UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	M05D6.3	M05D6.3	0	chrII 8,476,819	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type)
2	F35C11.3	F35C11.3	n/a	chrII 8,247,519	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
3	C27D8.1	C27D8.1	n/a	chrIV 12,718,599	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
4	F56A11.6	F56A11.6	n/a	chrIV 581,274	contains similarity to Interpro domains IPR000175 (Sodium:neurotransmitter symporter), IPR000533 (Tropomyosin)
5	T06D4.4	T06D4.4	n/a	chrII 3,393,492	T06D4.4 encodes a neprilysin; neprilysins are thermolysin-like zinc metallopeptidases, found on the outer surface of animal cells, that negatively regulate small signalling peptides (e.g., enkephalin, tachykinin, insulin, and natriuretic peptides) by cleaving them; T06D4.4 has no clear orthologs in other organisms.
6	C04F12.6	C04F12.6	n/a	chrI 9,693,209	contains similarity to Pfam domain PF03057 Protein of unknown function contains similarity to Interpro domains IPR004296 (Protein of unknown function DUF236), IPR013303 (Wnt-14 protein)
7	F29D10.1	F29D10.1	n/a	chrI 8,840,873	contains similarity to Arabidopsis thaliana H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-) (Nucleolarsprotein NAP57 homolog) (Nopp-140-associated protein of 57 kDa homolog)s(AtNAP57).; SW:Q9LD90
8	Y53C10A.10	Y53C10A.10	n/a	chrI 12,024,518	contains similarity to Interpro domain IPR000694 (Proline-rich region)
9	C25D7.12	C25D7.12	n/a	chrV 15,032,736	contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein)
10	C01G12.3	C01G12.3	n/a	chrII 14,581,796	contains similarity to Petromyzon marinus NF-180.; TR:Q91255
11	fbxa-178	F17A9.1	n/a	chrV 6,116,834	F17A9.1 encodes a divergent ONECUT class CUT homeobox protein with a single N-terminal cut domain; F17A9.1 has an atypical tyrosine residue at position 48 of its homeodomain rather than a phenylalanine or tryptophan residue; the cut domain may be a compact DNA-binding domain composed of alpha helices; phylogenetically, F17A9.1 is (somewhat distantly) affiliated with C17H12.9, Drosophila ONECUT, and mammalian HNF6 proteins; F17A9.1 has no obvious function in mass RNAi assays.
12	F57F4.1	F57F4.1	n/a	chrV 6,391,469	contains similarity to Mus musculus Acyl-coenzyme A thioesterase 9, mitochondrial precursor (EC 3.1.2.-)s(Acyl-CoA thioesterase 9) (Acyl-CoA thioester hydrolase 9) (Acylscoenzyme A thioester hydrolase 2) (48 kDa acyl-CoA thioestershydrolase) (p48) (Mt-ACT48.1) (Protein U8) (MTE-2).; SW:Q9R0X4
13	C34D4.2	C34D4.2	n/a	chrIV 7,155,353	contains similarity to Pfam domain PF00149 Calcineurin-like phosphoesterase contains similarity to Interpro domains IPR004843 (Metallophosphoesterase), IPR006186 (Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase)
14	F58F12.2	F58F12.2	n/a	chrII 6,387,834
15	D1081.5	D1081.5	n/a	chrI 8,481,820	contains similarity to Interpro domain IPR009061 ()
16	srbc-67	T24A6.10	n/a	chrV 3,539,627	C. elegans SRBC-67 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
17	ZK930.6	ZK930.6	n/a	chrII 11,885,760	contains similarity to Interpro domain IPR001984 (Peptidase S16, Lon protease)
18	W03A5.5	W03A5.5	n/a	chrIII 5,439,347
19	ZK484.7	ZK484.7	0.001	chrI 6,095,825	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR016130 (Protein-tyrosine phosphatase, active site), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000387 (Protein-tyrosine phosphatase)
20	spe-11	F48C1.7	n/a	chrI 5,331,412	spe-11 encodes a novel protein that is required for early embryonic development and for regulating the dynamic morphology of sperm pseudopods; although the precise biological role of SPE-11 is not yet known, SPE-11 is one of the few paternally provided proteins known to be essential for embryogenesis, and may constitute a sperm-associated factor required for oocyte activation; SPE-11 is first detected in the nuclei of primary spermatocytes and then remains tightly associated with sperm chromatin until fertilization at which point it appears to be degraded.
21	sfxn-1.2	F37H8.4	n/a	chrII 11,186,977	C. elegans SFXN-1.2 protein; contains similarity to Pfam domain PF03820 Tricarboxylate carrier contains similarity to Interpro domain IPR004686 (Tricarboxylate/iron carrier)
22	K11C4.1	K11C4.1	n/a	chrV 6,897,709	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
23	C15H7.3	C15H7.3	n/a	chrIII 9,651,090	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000387 (Protein-tyrosine phosphatase)
24	C38C3.8	C38C3.8	n/a	chrV 1,505,005	contains similarity to Ascaris suum MFP2b.; TR:Q7YXJ9
25	C47A4.3	C47A4.3	n/a	chrIV 13,741,621	contains similarity to Pfam domain PF00149 Calcineurin-like phosphoesterase contains similarity to Interpro domains IPR004843 (Metallophosphoesterase), IPR006186 (Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase)
26	C01G6.2	C01G6.2	n/a	chrII 9,267,839	contains similarity to Interpro domain IPR008065 (FMRFamide-related peptide 2)
27	F48F5.1	F48F5.1	n/a	chrV 20,437,708	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR003546 (Protein-tyrosine phosphatase, modular, Salmonella/Yersinia), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000387 (Protein-tyrosine phosphatase)
28	C24A11.1	C24A11.1	n/a	chrI 5,402,352
29	F44F4.10	F44F4.10	n/a	chrII 10,916,498	F44F4.1 encodes a nematode-specific sperm protein probably required for a normally high ovulation rate; F44F4.1 has no obvious non-nematode homologs, but does have a putative central coiled-coil domain, and is is paralogous to four other C. elegans proteins (B0207.11, F42G4.6, T08G11.2, and Y81G3A.1); F44F4.1(tm332) hermaphrodites show abnormal egg-laying, retaining significantly fewer eggs than wild-type (perhaps due to a lowered ovulation rate) while retaining late-stage embryos; F44F4.1 has no obvious phenotype in mass RNAi experiments, possibly because of genetic redundancy with its paralogs; F44F4.1 expression is enriched in spermatogenesis.
30	T25B9.4	T25B9.4	n/a	chrIV 10,756,710	contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) , PF00017 (SH2 domain) contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related), IPR000980 (SH2 motif), IPR008266 (Tyrosine protein kinase, active site)
31	C03B8.1	C03B8.1	n/a	chrIII 7,716,961
32	F55D12.6	F55D12.6	n/a	chrI 7,902,571	contains similarity to Interpro domains IPR000104 (Antifreeze protein, type I), IPR001865 (Ribosomal protein S2), IPR001859 (Ribosomal protein P2), IPR001778 (Pollen allergen Poa pIX/Phl pVI, C-terminal)
33	C18H7.4	C18H7.4	n/a	chrIV 594,283	contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) , PF00017 (SH2 domain) contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related), IPR000980 (SH2 motif), IPR008266 (Tyrosine protein kinase, active site)
34	ssp-32	F32B6.7	n/a	chrIV 9,895,754	C. elegans SSP-32 protein; contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein)
35	F38H4.4	F38H4.4	0.00009	chrIV 11,849,205	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000387 (Protein-tyrosine phosphatase)
36	C54D10.4	C54D10.4	n/a	chrV 12,420,859	contains similarity to Interpro domain IPR008952 (Tetraspanin)
37	C16A11.7	C16A11.7	n/a	chrII 4,256,423
38	sri-66	F28B1.6	n/a	chrV 17,060,972	C. elegans SRI-66 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
39	C10H11.7	C10H11.7	n/a	chrI 4,720,444	contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein)
40	C35E7.9	C35E7.9	n/a	chrI 10,807,562	contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein), IPR005819 (Histone H5)
41	C16D9.5	C16D9.5	n/a	chrV 8,244,484	contains similarity to Pfam domain PF07801 Protein of unknown function (DUF1647) contains similarity to Interpro domain IPR012444 (Protein of unknown function DUF1647)
42	C06A5.2	C06A5.2	n/a	chrI 6,006,816	contains similarity to Homo sapiens Microtubule-associated protein 1B; ENSEMBL:ENSP00000296755
43	F36D3.4	F36D3.4	n/a	chrV 16,517,063	contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein), IPR005819 (Histone H5)
44	F20H11.4	F20H11.4	0.000006	chrIII 6,609,417	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR016130 (Protein-tyrosine phosphatase, active site), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000387 (Protein-tyrosine phosphatase)
45	C06A1.3	C06A1.3	n/a	chrII 10,573,080	contains similarity to Pfam domain PF00149 Calcineurin-like phosphoesterase contains similarity to Interpro domains IPR004843 (Metallophosphoesterase), IPR006186 (Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase)
46	K08C9.1	K08C9.1	n/a	chrI 11,485,648
47	C15H7.4	C15H7.4	n/a	chrIII 9,655,035	contains similarity to Saccharomyces cerevisiae Protein that forms a complex with Spt4p and mediates both activation and inhibition of transcription elongation; Spt4p-Spt5p complex also plays a role in pre-mRNA processing; SGD:YML010W
48	M05B5.1	M05B5.1	n/a	chrI 7,178,689	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000387 (Protein-tyrosine phosphatase)
49	lact-4	M05D6.4	n/a	chrII 8,479,175	lact-4 encodes a beta-lactamase domain-containing protein that contains predicted signal and transmembrane sequences in its N terminus.
50	F47B3.5	F47B3.5	n/a	chrI 3,963,648	contains similarity to Pfam domain PF03057 Protein of unknown function contains similarity to Interpro domains IPR004296 (Protein of unknown function DUF236), IPR005398 (Tubby, N-terminal)