UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	M01G12.14	M01G12.14	0	chrI 12,107,675	contains similarity to Rhizobium meliloti Putative transposase of insertion sequence ISRM19 protein (Putativestransposase for insertion sequence ISRM19).; TR:Q925Y0
2	Y44F5A.1	Y44F5A.1	n/a	chrIII 4,246,236	contains similarity to Interpro domains IPR017422 (WD repeat protein 55), IPR011046 (WD40 repeat-like), IPR001680 (WD40 repeat), IPR015943 (WD40/YVTN repeat-like)
3	srh-277	K05D4.6	n/a	chrV 16,186,134	C. elegans SRH-277 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domains IPR003002 (7TM chemoreceptor, subfamily 1), IPR001280 (Photosystem I psaA and psaB)
4	K09F6.7	K09F6.7	n/a	chrII 2,291,523	contains similarity to Pfam domain PF00097 Zinc finger, C3HC4 type (RING finger) contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR000315 (Zinc finger, B-box)
5	D2005.3	D2005.3	n/a	chrI 7,814,395	contains similarity to Pfam domain PF01984 Double-stranded DNA-binding domain contains similarity to Interpro domain IPR002836 (DNA-binding TFAR19-related protein)
6	C26G2.2	C26G2.2	n/a	chrX 14,668,263	contains similarity to Drosophila melanogaster Flybase gene name is CG31439-PA;; FLYBASE:CG31439
7	cyp-14A1	K09A11.2	n/a	chrX 13,266,131	C. elegans CYP-14A1 protein; contains similarity to Pfam domain PF00067 Cytochrome P450 contains similarity to Interpro domains IPR001128 (Cytochrome P450), IPR002401 (Cytochrome P450, E-class, group I), IPR002403 (Cytochrome P450, E-class, group IV), IPR002397 (Cytochrome P450, B-class)
8	T26C11.2	T26C11.2	n/a	chrX 1,836,847	contains similarity to Interpro domains IPR000893 (Luteovirus ORF6 protein), IPR000694 (Proline-rich region), IPR000480 (Glutelin)
9	bbs-2	F20D12.3	n/a	chrIV 7,935,876	bbs-2 is orthologous to human BBS2 (OMIM:606151, mutated in Bardet-Biedl syndrome 2); while the function of BBS-2 is unknown, it shares conserved domains with its human paralogs BBS1 and BBS7, which also are mutated in other Bardet-Biedl syndromes.
10	nhr-43	C29E6.5	n/a	chrIV 11,901,266	nhr-43 is predicted to encode a nuclear hormone receptor (NHR); the primary sequence of nhr-43 reveals that it has a leucine instead of a methionine that is conserved within the NHR superfamily at the carboxyl boundary of the DNA-binding domain.
11	C34F6.6	C34F6.6	n/a	chrX 11,207,733	contains similarity to Pisum sativum 2-dehydro-3-deoxyphosphooctonate aldolase (EC 2.5.1.55) (Phospho-2-sdehydro-3-deoxyoctonate aldolase) (3-deoxy-D-manno-octulosonic acid 8-sphosphate synthetase) (KDO-8-phosphate synthetase) (KDO 8-P synthase)s(KDOPS).; SW:KDSA_PEA
12	F16H6.4	F16H6.4	n/a	chrV 18,199,789	contains similarity to Pfam domain PF06162 Caenorhabditis elegans protein of unknown function (DUF976) contains similarity to Interpro domains IPR010381 (Protein of unknown function DUF976, Caenorhabditis species), IPR016125 (Peptidase C15, pyroglutamyl peptidase I-like)
13	F32H2.8	F32H2.8	n/a	chrI 8,992,131	contains similarity to Pfam domain PF03314 Protein of unknown function, DUF273 contains similarity to Interpro domains IPR004988 (Protein of unknown function DUF273), IPR002229 (Blood group Rhesus C/E and D polypeptide)
14	Y38H6A.1	Y38H6A.1	n/a	chrV 20,322,280	contains similarity to Trypanosoma brucei brucei Histone H1.; TR:Q9N6S6
15	gpa-18	W03F8.9	n/a	chrIV 5,192,340	gpa-18 encodes a divergent G protein alpha subunit, with roughly as much similarity to fungal as to metazoan homologs.
16	F55F10.1	F55F10.1	n/a	chrIV 4,373,684	contains similarity to Pfam domains PF07726 (ATPase family associated with various cellular activities (AAA)) , PF00092 (von Willebrand factor type A domain) , PF07728 (ATPase family associated with various cellular activities (AAA)) (5)contains similarity to Interpro domains IPR011704 (ATPase associated with various cellular activities, AAA-5), IPR011703 (ATPase associated with various cellular activities, AAA-3), IPR012099 (Midasin), IPR003593 (AAA+ ATPase, core), IPR002078 (RNA polymerase sigma factor 54, interaction), IPR002035 (von Willebrand factor, type A)
17	srd-63	F13A7.2	n/a	chrV 16,393,128	C. elegans SRD-63 protein ;
18	M117.3	M117.3	n/a	chrIV 11,823,697	M117.3 can encode a protein with similarity to the C-terminal half of the 14-3-3 proteins PAR-5 and FTT-2, beginning in predicted alpha helix five and continuing through the ends of the proteins; loss of M117.3 activity via large-scale RNAi results in no obvious abnormalities.
19	R53.5	R53.5	n/a	chrII 9,969,980	contains similarity to Interpro domain IPR012336 (Thioredoxin-like fold)
20	srab-8	C36C5.2	n/a	chrV 3,177,218	C. elegans SRAB-8 protein ;
21	F35E8.4	F35E8.4	n/a	chrV 15,910,554	contains similarity to Pfam domain PF01549 ShK domain-like contains similarity to Interpro domain IPR003582 (Metridin-like ShK toxin)
22	F37C12.14	F37C12.14	n/a	chrIII 7,185,248
23	ZC373.1	ZC373.1	n/a	chrX 10,055,836	The ZC373.1 gene encodes an ortholog of the human gene CYSTATHIONINE-BETA-SYNTHASE (CBS), which when mutated leads to homocystinuria (OMIM:236200).
24	F20G2.5	F20G2.5	n/a	chrV 13,772,581	contains similarity to Pfam domain PF02408 (Domain of unknown function DUF141)
25	sra-32	B0304.5	n/a	chrII 4,530,916	C. elegans SRA-32 protein; contains similarity to Pfam domain PF02117 C.elegans Sra family integral membrane protein contains similarity to Interpro domain IPR000344 (Nematode chemoreceptor, Sra)
26	lgc-23	C15A7.1	n/a	chrX 12,066,273	C. elegans LGC-23 protein; contains similarity to Pfam domain PF02931 Neurotransmitter-gated ion-channel ligand binding domain contains similarity to Interpro domains IPR006201 (Neurotransmitter-gated ion-channel), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding)
27	C18B2.6	C18B2.6	n/a	chrX 3,615,375	contains similarity to Pfam domain PF00858 Amiloride-sensitive sodium channel contains similarity to Interpro domain IPR001873 (Na+ channel, amiloride-sensitive)
28	W06G6.1	W06G6.1	n/a	chrV 16,625,961	contains similarity to Pfam domain PF01757 Acyltransferase family contains similarity to Interpro domains IPR002656 (Acyltransferase 3), IPR006621 (Nose resistant to fluoxetine-4, N-terminal)
29	nhr-272	T07C5.2	n/a	chrX 12,704,012	C. elegans NHR-272 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
30	K02F6.7	K02F6.7	n/a	chrII 2,527,240
31	T20G5.10	T20G5.10	n/a	chrIII 10,211,438	contains similarity to Pfam domain PF06320 GCN5-like protein 1 (GCN5L1) contains similarity to Interpro domain IPR009395 (GCN5-like 1)
32	R07E5.5	R07E5.5	n/a	chrIII 4,398,025	contains similarity to Interpro domains IPR015880 (Zinc finger, C2H2-like), IPR007087 (Zinc finger, C2H2-type)
33	Y54G11A.9	Y54G11A.9	n/a	chrII 14,345,333	contains similarity to Pfam domain PF01521 Iron-sulphur cluster biosynthesis contains similarity to Interpro domains IPR016092 (HesB/YadR/YfhF), IPR000361 (HesB/YadR/YfhF-like)
34	T23F6.1	T23F6.1	n/a	chrIV 12,720,397	contains similarity to Interpro domain IPR002952 (Eggshell protein)
35	F28H7.8	F28H7.8	n/a	chrV 10,759,739	contains similarity to Pfam domains PF01105 (emp24/gp25L/p24 family/GOLD) , PF00650 (CRAL/TRIO domain) contains similarity to Interpro domains IPR001071 (Cellular retinaldehyde binding/alpha-tocopherol transport), IPR001251 (Cellular retinaldehyde-binding/triple function, C-terminal), IPR011074 (Phosphatidylinositol transfer protein-like, N-terminal), IPR000348 (emp24/gp25L/p24)
36	T08B6.1	T08B6.1	n/a	chrIV 4,887,059
37	C25F9.2	C25F9.2	n/a	chrV 19,424,086	contains similarity to Pfam domain PF03175 DNA polymerase type B, organellar and viral contains similarity to Interpro domains IPR006172 (DNA-directed DNA polymerase, family B), IPR004868 (DNA-directed DNA polymerase, family B, mitochondria/virus), IPR012337 (Polynucleotidyl transferase, Ribonuclease H fold)
38	K06A1.3	K06A1.3	n/a	chrII 6,442,625	contains similarity to Pfam domain PF00100 Zona pellucida-like domain contains similarity to Interpro domain IPR001507 (Endoglin/CD105 antigen)
39	srh-25	C54D10.6	n/a	chrV 12,433,068	C. elegans SRH-25 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
40	B0554.4	B0554.4	n/a	chrV 432,094	contains similarity to Pfam domain PF02795 Domain of unknown function (DUF225) contains similarity to Interpro domain IPR004024 (Protein of unknown function DUF225)
41	C15H9.3	C15H9.3	n/a	chrX 6,116,887	contains similarity to Pfam domain PF00001 7 transmembrane receptor (rhodopsin family) contains similarity to Interpro domain IPR000276 (GPCR, rhodopsin-like)
42	F41E6.9	F41E6.9	n/a	chrV 8,605,583	contains similarity to Pfam domain PF03357 Snf7 contains similarity to Interpro domain IPR005024 (Snf7)
43	sri-51	ZC239.8	n/a	chrII 3,198,350	C. elegans SRI-51 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
44	str-68	Y73C8C.6	n/a	chrV 3,106,888	C. elegans STR-68 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
45	srh-180	F57G8.1	n/a	chrV 16,318,159	C. elegans SRH-180 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
46	srh-186	F36G9.2	n/a	chrV 15,956,387	C. elegans SRH-186 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
47	fbxa-102	K03D7.7	n/a	chrV 17,492,710	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
48	W02D9.9	W02D9.9	n/a	chrI 12,557,310	contains similarity to Bacteroides thetaiotaomicron Arabinose-proton symporter (Arabinose transporter).; TR:Q8AAL0
49	R12E2.6	R12E2.6	n/a	chrI 4,151,478	contains similarity to Interpro domain IPR000694 (Proline-rich region)
50	nhr-83	F48G7.3	n/a	chrV 632,120	C. elegans NHR-83 protein; contains similarity to Pfam domains PF07914 (Protein of unknown function (DUF1679)) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR012877 (Protein of unknown function DUF1679, Caenorhabditis species), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core), IPR015897 (CHK kinase-like)