UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	H37N21.1	H37N21.1	0	chrI 7,143,753	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001397 (5-Hydroxytryptamine 5A receptor), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
2	T26E4.5	T26E4.5	n/a	chrV 15,787,827	contains similarity to Interpro domain IPR008996 ()
3	T20D4.6	T20D4.6	n/a	chrV 3,411,676	contains similarity to Pfam domains PF00339 (Arrestin (or S-antigen), N-terminal domain) , PF02752 (Arrestin (or S-antigen), C-terminal domain) contains similarity to Interpro domains IPR014756 (Immunoglobulin E-set), IPR011022 (Arrestin-like, C-terminal), IPR014752 (Arrestin, C-terminal), IPR011021 (Arrestin-like, N-terminal)
4	C31H5.6	C31H5.6	n/a	chrI 9,045,096	contains similarity to Pfam domains PF08840 (BAAT / Acyl-CoA thioester hydrolase C terminal) , PF04775 (Acyl-CoA thioester hydrolase / Bile acid-CoA amino acid N-acetyltransferase) contains similarity to Interpro domains IPR006862 (Acyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferase), IPR014940 (BAAT/Acyl-CoA thioester hydrolase C-terminal), IPR016662 (Acyl-CoA thioesterase, long chain)
5	T24E12.9	T24E12.9	n/a	chrII 3,766,771
6	C47C12.2	C47C12.2	n/a	chrX 7,754,107
7	ZC196.6	ZC196.6	n/a	chrV 8,727,690	contains similarity to Mycoplasma genitalium Protein P200.; SW:Q49429
8	str-231	C06C6.3	n/a	chrV 16,006,927	C. elegans STR-231 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
9	C47F8.5	C47F8.5	n/a	chrI 12,322,989	contains similarity to Pfam domain PF01762 Galactosyltransferase contains similarity to Interpro domain IPR002659 (Glycosyl transferase, family 31)
10	srh-130	F14F9.1	n/a	chrV 5,152,066	C. elegans SRH-130 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domains IPR001463 (Sodium:alanine symporter), IPR003002 (7TM chemoreceptor, subfamily 1)
11	T10C6.2	T10C6.2	n/a	chrV 16,013,354	contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
12	srw-113	ZK1037.9	n/a	chrV 15,333,837	C. elegans SRW-113 protein; contains similarity to Interpro domain IPR017452 (GPCR, rhodopsin-like superfamily)
13	T17A3.10	T17A3.10	n/a	chrIII 155,573	contains similarity to Interpro domain IPR007110 (Immunoglobulin-like)
14	E03H4.4	E03H4.4	n/a	chrI 12,409,488	contains similarity to Pfam domain PF03385 Protein of unknown function, DUF288 contains similarity to Interpro domain IPR005049 (Protein of unknown function DUF288)
15	str-207	F26G5.4	n/a	chrV 4,952,370	C. elegans STR-207 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
16	pbs-6	C02F5.9	n/a	chrIII 8,243,577	The pbs-6 gene encodes a homolog of mammalian PSMB1.
17	clec-9	Y70C5C.2	n/a	chrV 16,705,835	C. elegans CLEC-9 protein; contains similarity to Pfam domains PF00431 (CUB domain) , PF00059 (Lectin C-type domain) (2)contains similarity to Interpro domains IPR000859 (CUB), IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
18	srw-133	T05B4.6	n/a	chrV 4,114,016	C. elegans SRW-133 protein; contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR002455 (GPCR, family 3, gamma-aminobutyric acid receptor, type B)
19	C37A2.6	C37A2.6	n/a	chrI 6,788,535	contains similarity to Pfam domain PF06325 Ribosomal protein L11 methyltransferase (PrmA) contains similarity to Interpro domain IPR010456 (Ribosomal L11 methyltransferase)
20	dyf-11	C02H7.1	n/a	chrX 765,241	dyf-11 encodes a conserved protein orthologous to the human microtubule-binding protein MIP-T3 and that contains a lysine-rich region and a C-terminal coiled-coil domain present in a number of intraflagellar transport (IFT) complex B proteins; DYF-11 activity is required continuously in sensory neurons for formation of medial and distal ciliary segments and thus, for normal sensory cilium morphology and function and chemotaxis; a dyf-11::gfp promoter fusion is expressed in all ciliated sensory neurons as well as in the AQR, PQR, ADE, and PDR neurons; a DYF-11::GFP protein fusion is detected throughout the cilium and appears to localize to IFT-B particles in a manner consistent with an early role in IFT-B particle assembly; dyf-11 expression in ciliated neurons is dependent upon the presence of the DAF-19 RFX transcription factor.
21	nhr-111	F44G3.9	n/a	chrV 16,123,891	nhr-111 encodes a member of the nuclear receptor superfamily; by homology, NHR-111 is predicted to function as a ligand-dependent transcriptional regulator, but as loss of nhr-111 activity via large-scale RNAi screens does not result in any abnormalities, the precise role of NHR-111 in C. elegans development and/or behavior is not yet known; an nhr-111 reporter construct is expressed in embryos and early larvae in a pair of neurons in the ventral ganglion of the head and in two cells that may be the somatic gonad precursors.
22	pqn-62	T03G11.1	n/a	chrX 5,200,980	The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).
23	nhr-115	T27B7.4	n/a	chrV 2,293,666	nhr-115 encodes a nuclear receptor that is most highly conserved amongst nematode species.
24	str-18	T23D5.6	n/a	chrV 15,741,213	C. elegans STR-18 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
25	W04B5.2	W04B5.2	n/a	chrIII 2,425,901	contains similarity to Interpro domains IPR015880 (Zinc finger, C2H2-like), IPR005386 (EDG-8 sphingosine 1-phosphate receptor)
26	C47F8.1	C47F8.1	n/a	chrI 12,335,819	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
27	C56A3.6	C56A3.6	n/a	chrV 13,554,913	contains similarity to Pfam domain PF00036 (EF hand)
28	gpa-9	F56H9.4	n/a	chrV 12,648,055	gpa-9 encodes a member of the G protein alpha subunit family of heterotrimeric GTPases; it is expressed in ASJ, PHB, PVQ, pharyngeal muscle, and the spermatheca.
29	F20D1.7	F20D1.7	n/a	chrX 14,989,294	contains similarity to Pfam domain PF00560 Leucine Rich Repeat contains similarity to Interpro domains IPR001611 (Leucine-rich repeat), IPR013783 (Immunoglobulin-like fold), IPR003591 (Leucine-rich repeat, typical subtype), IPR007110 (Immunoglobulin-like)
30	F52E1.3	F52E1.3	n/a	chrV 8,395,551
31	srx-19	T05A12.1	n/a	chrIV 6,874,033	C. elegans SRX-19 protein ;
32	F14F9.3	F14F9.3	n/a	chrV 5,139,826	contains similarity to Interpro domain IPR002867 (Zinc finger, C6HC-type)
33	R08F11.7	R08F11.7	n/a	chrV 3,791,935	contains similarity to Pfam domain PF03098 Animal haem peroxidase contains similarity to Interpro domains IPR002952 (Eggshell protein), IPR010255 (Haem peroxidase), IPR002007 (Haem peroxidase, animal)
34	fmo-2	K08C7.5	n/a	chrIV 10,683,426	fmo-2 encodes a flavin-containing monoxygenase homologous to human FMO1, FMO2, and FMO3 (OMIM:602079, mutated in trimethylaminuria).
35	B0348.2	B0348.2	n/a	chrV 46,173	contains similarity to Interpro domain IPR006629 (LPS-induced tumor necrosis factor alpha factor)
36	srx-117	C14C11.5	n/a	chrV 5,645,343	C. elegans SRX-117 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
37	K10F12.6	K10F12.6	n/a	chrIII 399,060
38	F46F5.14	F46F5.14	n/a	chrII 800,774	contains similarity to Pfam domain PF03314 Protein of unknown function, DUF273 contains similarity to Interpro domain IPR004988 (Protein of unknown function DUF273)
39	D2089.3	D2089.3	n/a	chrII 10,663,519	contains similarity to Homo sapiens hypothetical protein LOC150383; ENSEMBL:ENSP00000325301
40	ace-2	Y44E3A.2	n/a	chrI 3,304,491	An acetylcholineesterase involved in the termination of cholinergic nerve transmission; it is predominantly expressed in motoneurons.
41	srx-112	T24E12.8	n/a	chrII 3,764,010	C. elegans SRX-112 protein ;
42	F20A1.4	F20A1.4	n/a	chrV 7,020,334
43	D1044.4	D1044.4	n/a	chrIII 5,521,831
44	B0365.7	B0365.7	n/a	chrV 13,144,616	contains similarity to Pfam domain PF08393 Dynein heavy chain, N-terminal region 2 contains similarity to Interpro domains IPR013602 (Dynein heavy chain, N-terminal region 2), IPR000215 (Protease inhibitor I4, serpin)
45	K02E11.6	K02E11.6	n/a	chrV 14,251,141	contains similarity to Interpro domain IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)
46	str-63	C17B7.1	n/a	chrV 3,352,167	C. elegans STR-63 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
47	srg-22	Y25C1A.10	n/a	chrII 3,092,472	C. elegans SRG-22 protein; contains similarity to Pfam domain PF02118 C.elegans Srg family integral membrane protein contains similarity to Interpro domain IPR000609 (Serpentine gamma receptor, Caenorhabditis species)
48	F21D9.8	F21D9.8	n/a	chrV 19,279,623	contains similarity to Medicago truncatula Pectin methyl-esterase PER precursor (EC 3.1.1.11).; TR:Q9SC90
49	K02E10.7	K02E10.7	n/a	chrX 2,504,770	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
50	K06A1.1	K06A1.1	n/a	chrII 6,455,658	K06A1.1 encodes an AP-2-like transcription factor.