UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	str-136	F21F8.9	0	chrV 8,278,202	C. elegans STR-136 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR003002 (7TM chemoreceptor, subfamily 1)
2	str-256	T01G6.9	1e-20	chrV 500,551	C. elegans STR-256 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
3	sre-7	K02E11.2	n/a	chrV 14,245,132	C. elegans SRE-7 protein; contains similarity to Pfam domain PF03125 C. elegans Sre G protein-coupled chemoreceptor contains similarity to Interpro domain IPR004151 (C. elegans Sre G protein-coupled chemoreceptor)
4	K07G6.1	K07G6.1	n/a	chrII 1,741,871
5	F21C10.5	F21C10.5	n/a	chrV 9,125,800	contains similarity to Xenopus tropicalis H/ACA ribonucleoprotein complex subunit 1-like protein.; SW:Q5RJV1
6	dop-4	C52B11.3	n/a	chrX 1,296,964	C. elegans DOP-4 protein; contains similarity to Pfam domain PF00001 7 transmembrane receptor (rhodopsin family) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR000929 (Dopamine receptor), IPR002233 (Adrenergic receptor), IPR001671 (Melanocortin/ACTH receptor), IPR000995 (Muscarinic acetylcholine receptor), IPR000276 (GPCR, rhodopsin-like)
7	K05F6.8	K05F6.8	n/a	chrII 1,567,541	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
8	acy-2	C10F3.3	n/a	chrV 5,978,731	acy-2 encodes an adenylyl cyclase; an intragenic deletion of acy-2 is lethal at the first larval stage of development; the terminal phenotype resembles that seen in loss-of-function gsa-1 mutants.
9	Y43F8C.6	Y43F8C.6	n/a	chrV 19,636,948	contains similarity to Interpro domains IPR001412 (Aminoacyl-tRNA synthetase, class I, conserved site), IPR009057 (Homeodomain-like)
10	srt-16	C50H11.11	n/a	chrV 3,064,037	C. elegans SRT-16 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
11	R09H3.1	R09H3.1	n/a	chrX 1,660,650	contains similarity to Sulfolobus solfataricus DNA double-strand break repair rad50 ATPase.; SW:Q97WH0
12	nas-33	K04E7.3	n/a	chrX 6,453,429	C. elegans NAS-33 protein; contains similarity to Pfam domains PF00090 (Thrombospondin type 1 domain) , PF01400 (Astacin (Peptidase family M12A)) contains similarity to Interpro domains IPR000884 (Thrombospondin, type I), IPR000742 (EGF-like, type 3), IPR006030 (Molluscan rhodopsin C-terminal tail), IPR006025 (Peptidase M, neutral zinc metallopeptidases, zinc-binding site), IPR000694 (Proline-rich region), IPR001506 (Peptidase M12A, astacin), IPR006026 (Peptidase, metallopeptidases), IPR000859 (CUB), IPR013032 (EGF-like region, conserved site)
13	clec-44	R07C3.12	n/a	chrII 921,144	C. elegans CLEC-44 protein; contains similarity to Pfam domain PF00059 Lectin C-type domain contains similarity to Interpro domains IPR000859 (CUB), IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
14	F31B9.1	F31B9.1	n/a	chrX 15,912,318	contains similarity to Pfam domain PF00001 7 transmembrane receptor (rhodopsin family) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR002286 (P2 purinoceptor), IPR006121 (Heavy metal transport/detoxification protein), IPR000276 (GPCR, rhodopsin-like)
15	F58A3.3	F58A3.3	n/a	chrX 11,012,975	contains similarity to Mus musculus Glucosidase II beta-subunit (Fragment).; TR:Q9R1N5
16	C44B12.6	C44B12.6	n/a	chrIV 1,131,250	contains similarity to Interpro domain IPR010345 (Interleukin-17)
17	C50F7.6	C50F7.6	n/a	chrIV 7,721,871	contains similarity to Homo sapiens Isoform 4 of PDZ domain-containing RING finger protein 4; ENSEMBL:ENSP00000370169
18	F26H9.2	F26H9.2	n/a	chrI 9,292,112	contains similarity to Pfam domain PF02755 RPEL repeat contains similarity to Interpro domain IPR004018 (RPEL repeat)
19	F59H6.6	F59H6.6	n/a	chrII 2,011,980	contains similarity to Interpro domain IPR009057 (Homeodomain-like)
20	ZK262.9	ZK262.9	n/a	chrV 18,440,924	contains similarity to Brachydanio rerio Similar to formin binding protein 3.; TR:Q7ZUE4
21	nhr-208	R07B7.15	n/a	chrV 12,095,111	C. elegans NHR-208 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR001723 (Steroid hormone receptor), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
22	T18D3.7	T18D3.7	n/a	chrX 12,442,974	contains similarity to Pfam domain PF01166 TSC-22/dip/bun family contains similarity to Interpro domain IPR000580 (TSC-22 / Dip / Bun)
23	Y40B1A.2	Y40B1A.2	n/a	chrI 13,348,157	contains similarity to Pfam domain PF00397 WW domain contains similarity to Interpro domains IPR002349 (WW), IPR001202 (WW/Rsp5/WWP)
24	C39D10.1	C39D10.1	n/a	chrX 7,906,986
25	nhr-233	Y32B12B.6	n/a	chrV 16,570,335	C. elegans NHR-233 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR001723 (Steroid hormone receptor), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
26	scrm-3	C04E12.7	n/a	chrV 3,356,584	scrm-3 encodes a putative phospholipid scramblase homologous to human PLSCR1-5, and paralogous to other C. elegans SCRMs (e.g., SCRM-1); SCRM-3 is expressed in neurons, anal depressor muscle, and occasionally in body wall muscle cells; however, in apoptotic germline cells, SCRM-3 is fully dispensable for normally rapid engulfment and largely dispensable for phosphatidylserine exposure; SCRM-3 does not bind WAH-1 in vitro, and scrm-3(tm631) mutants have no obvious phenotype.
27	K10H10.5	K10H10.5	n/a	chrII 14,502,114	contains similarity to Interpro domain IPR001030 (Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha)
28	ift-81	F32A6.2	n/a	chrX 5,302,501	C. elegans IFT-81 protein; contains similarity to Interpro domains IPR010989 (t-SNARE), IPR000533 (Tropomyosin)
29	F53G2.2	F53G2.2	n/a	chrII 2,483,921
30	C50H11.1	C50H11.1	n/a	chrV 3,090,166	contains similarity to Pfam domain PF00501 AMP-binding enzyme contains similarity to Interpro domain IPR000873 (AMP-dependent synthetase and ligase)
31	W02B3.3	W02B3.3	n/a	chrIII 668,260
32	ZK688.1	ZK688.1	n/a	chrIII 7,910,130
33	math-23	C46F9.2	n/a	chrII 1,903,365	The C46F9.2 gene encodes a protein closely similar to C46F9.3, which has a meprin-associated Traf homology (MATH) domain and may be involved in apoptosis.
34	C32B5.14	C32B5.14	n/a	chrII 966,320
35	F09B12.5	F09B12.5	n/a	chrX 15,086,421	contains similarity to Pfam domain PF00057 Low-density lipoprotein receptor domain class A contains similarity to Interpro domain IPR002172 (Low density lipoprotein-receptor, class A, cysteine-rich)
36	W09B6.5	W09B6.5	n/a	chrII 1,140,824
37	wrn-1	F18C5.2	n/a	chrII 6,557,068	wrn-1 encodes an ortholog of human WRN, which when mutated leads to Werner syndrome (OMIM:277700), and one of four C. elegans homologs of the RecQ DNA helicase family that includes E. coli RecQ; by homology, WRN-1 is predicted to function as a helicase, DNA-dependent ATPase, and exonuclease that plays a key role in DNA replication, recombination, and repair; RNA interference studies in C. elegans and the enhancement of many of the resulting phenotypes by ionizing radiation indicate that wrn-1 affects life span and aging and acts at a DNA damage checkpoint; the wrn-1 phenotypes such as premature aging are similar to those of Werner syndrome; immunolocalization studies indicate that WRN-1 expression is nuclear in cells at the embryonic, larval and adult stages.
38	twk-10	K04A8.4	n/a	chrV 6,553,200	C. elegans TWK-10 protein; contains similarity to Pfam domain PF07885 Ion channel contains similarity to Interpro domains IPR003280 (Potassium channel, two pore-domain), IPR013099 (Ion transport 2)
39	srxa-4	F18E3.1	n/a	chrV 7,421,068	C. elegans SRXA-4 protein; contains similarity to Pfam domain PF03383 Caenorhabditis serpentine receptor-like protein, class xa contains similarity to Interpro domain IPR005047 (Protein of unknown function DUF286, G protein-coupled receptor-like putative Caenorhabditis species)
40	srj-44	T03D3.11	1e-16	chrV 2,845,216	C. elegans SRJ-44 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
41	lin-11	ZC247.3	n/a	chrI 10,251,797	lin-11 encodes a predicted LIM homeodomain transcription factor that affects vulval development, neuronal development and fate specification, utse cell differentiation, and fertility; it is expressed in some neurons, the vulva, pi cells and their progeny, and the spermatheca.
42	clec-212	F19F10.7	n/a	chrV 7,566,626	C. elegans CLEC-212 protein; contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR001304 (C-type lectin)
43	B0238.7	B0238.7	n/a	chrV 5,261,699	contains similarity to Pfam domain PF00135 Carboxylesterase contains similarity to Interpro domain IPR002018 (Carboxylesterase, type B)
44	bath-45	F29C12.5	n/a	chrII 13,123,821	C. elegans BATH-45 protein; contains similarity to Pfam domains PF00651 (BTB/POZ domain) (2), PF00917 (MATH domain) contains similarity to Interpro domains IPR002083 (MATH), IPR000210 (BTB/POZ-like), IPR011333 (BTB/POZ fold), IPR013069 (BTB/POZ)
45	R11D1.2	R11D1.2	n/a	chrV 12,709,668	contains similarity to Pfam domain PF00646 F-box domain contains similarity to Interpro domain IPR001810 (Cyclin-like F-box)
46	srh-190	C17E7.2	n/a	chrV 3,903,811	C. elegans SRH-190 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
47	dsl-4	F16B12.2	n/a	chrX 14,091,441	dsl-4 encodes a putative secreted protein with a single DSL domain and three EGF domains in series, somewhat like Delta/LAG-2; unlike the nematode-specific family of Delta/LAG-2-like proteins (including DSL-1, -2, -3, -5, -6, and -7), DSL-4 is evolutionarily divergent, with perhaps a distant affinity to APX-1, ARG-1, and LAG-2.
48	C47A10.5	C47A10.5	n/a	chrV 17,775,721	C47A10.5 encodes a D-aspartate oxidase (DASPO), paralogous to F18E3.7 and F20H11.5; recombinant C47A10.5 protein has DASPO acvitity on acidic D-amino acid substrates (e.g., D-aspartate, D-glutamate, or N-methyl-D-aspartate/NMDA), with highest catalytic efficiency on D-glutamate; since the C-terminal residues of C47A10.5 match the PTS1 consensus sequence, C47A10.5 is predicted to be peroxisomal.
49	F21C10.1	F21C10.1	n/a	chrV 9,132,804	contains similarity to Pfam domain PF01705 CX module contains similarity to Interpro domain IPR002619 (Protein of unknown function CX)
50	col-78	W07A12.5	n/a	chrII 9,153,340	C. elegans COL-78 protein; contains similarity to Pfam domain PF01391 Collagen triple helix repeat (20 copies) contains similarity to Interpro domains IPR000694 (Proline-rich region), IPR008161 (Collagen helix repeat), IPR008160 (Collagen triple helix repeat)