UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	C10C6.3	C10C6.3	4e-142	chrIV 11,464,370	contains similarity to Saccharomyces cerevisiae Putative glycosidase of the cell wall, may have a role in cell wall architecture; SGD:YGR189C
2	skr-9	C52D10.7	n/a	chrIV 17,163,837	skr-9 encodes a homolog of Skp1 in S. cerevisiae, a component of the SCF (Skp1, Cullin, F-box) ubiquitin-ligase complex that regulates ubiquitin-mediated protein degradation; SKR-9 is required for posterior body morphogenesis, embryonic and larval development, and postembryonic cell proliferation.
3	Y42A5A.3	Y42A5A.3	n/a	chrV 11,095,685	contains similarity to Bacillus subtilis Hypothetical protein yhen.; TR:O07596
4	djr-1.2	C49G7.11	n/a	chrV 4,054,635	C. elegans DJR-1.2 protein; contains similarity to Pfam domain PF01965 DJ-1/PfpI family contains similarity to Interpro domains IPR006287 (DJ-1), IPR002818 (ThiJ/PfpI)
5	F21D9.3	F21D9.3	n/a	chrV 19,257,632	contains similarity to Hepatitis B virus Large S protein (Major surface antigen).; TR:Q8JXA0
6	Y43F8B.6	Y43F8B.6	n/a	chrV 19,493,363	contains similarity to Yersinia pestis Putative insecticial toxin.; TR:Q8ZAV3
7	C50B8.4	C50B8.4	n/a	chrV 13,572,712	contains similarity to Helicobacter pylori Vacuolating cytotoxin.; TR:Q9ZHV0
8	nhr-42	C33G8.6	n/a	chrV 6,999,694	C. elegans NHR-42 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR001723 (Steroid hormone receptor), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
9	sru-23	F36G9.6	n/a	chrV 15,971,479	C. elegans SRU-23 protein; contains similarity to Pfam domain PF02688 Domain of unknown function DUF215 contains similarity to Interpro domains IPR003839 (Protein of unknown function DUF215), IPR000609 (Serpentine gamma receptor, Caenorhabditis species)
10	F27C1.10	F27C1.10	n/a	chrI 5,435,347
11	C39B10.3	C39B10.3	n/a	chrX 10,443,924	contains similarity to Saccharomyces cerevisiae Protein involved in mating-type locus silencing, interacts with Sir2p; probably functions to recruit or stabilize Sir proteins; SGD:YDR363W
12	F53F10.1	F53F10.1	n/a	chrI 3,835,946	contains similarity to Homo sapiens Coiled-coil domain-containing protein 102A; ENSEMBL:ENSP00000258214
13	lips-4	K12B6.3	n/a	chrV 6,279,558	C. elegans LIPS-4 protein; contains similarity to Pfam domain PF01674 Lipase (class 2) contains similarity to Interpro domain IPR002918 (Lipase, class 2)
14	R01B10.3	R01B10.3	n/a	chrV 6,044,828
15	str-45	T09F5.3	n/a	chrV 15,159,744	C. elegans STR-45 protein ; contains similarity to Homo sapiens 42 kDa protein; VG:OTTHUMP00000169906
16	nhr-282	F54B8.2	n/a	chrV 15,812,667	C. elegans NHR-282 protein; contains similarity to Pfam domain PF00104 Ligand-binding domain of nuclear hormone receptor contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
17	C35A5.4	C35A5.4	n/a	chrV 10,498,176	contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000694 (Proline-rich region), IPR000535 (Major sperm protein)
18	dct-14	Y38H6C.3	n/a	chrV 20,495,572	C. elegans DCT-14 protein ; contains similarity to Rhizopus oryzae FK506-binding protein 4 (EC 5.2.1.8) (Peptidyl-prolyl cis-transsisomerase) (PPIase) (Rotamase).; SW:P0C1J6
19	C07A4.2	C07A4.2	n/a	chrX 10,173,174	contains similarity to Pfam domain PF00188 SCP-like extracellular protein contains similarity to Interpro domains IPR014044 (SCP-like extracellular), IPR001283 (Allergen V5/Tpx-1 related)
20	ZK1240.1	ZK1240.1	n/a	chrII 2,330,574	contains similarity to Pfam domain PF00097 Zinc finger, C3HC4 type (RING finger) contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR000315 (Zinc finger, B-box)
21	M01B2.6	M01B2.6	n/a	chrV 15,242,739	contains similarity to Pfam domain PF00704 Glycosyl hydrolases family 18 contains similarity to Interpro domains IPR011583 (Chitinase II), IPR017853 (Glycoside hydrolase, catalytic core), IPR001223 (Glycoside hydrolase, family 18, catalytic domain), IPR013781 (Glycoside hydrolase, subgroup, catalytic core)
22	str-261	W09D6.2	n/a	chrIII 11,075,857	C. elegans STR-261 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domains IPR011256 (Regulatory factor, effector, bacterial), IPR003002 (7TM chemoreceptor, subfamily 1)
23	srr-7	T01G5.4	n/a	chrV 15,129,054	C. elegans SRR-7 protein; contains similarity to Pfam domain PF03268 Caenorhabditis protein of unknown function, DUF267 contains similarity to Interpro domain IPR004950 (Protein of unknown function DUF267, Caenorhabditis species)
24	R04E5.9	R04E5.9	n/a	chrX 8,808,513	contains similarity to Homo sapiens Triadin; ENSEMBL:ENSP00000333984
25	srw-17	T10H4.6	n/a	chrV 15,276,192	C. elegans SRW-17 protein; contains similarity to Interpro domains IPR000190 (AT1 angiotensin II receptor), IPR017452 (GPCR, rhodopsin-like superfamily), IPR002259 (Delayed-early response protein/equilibrative nucleoside transporter)
26	C34B2.3	C34B2.3	n/a	chrI 10,673,805	contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase)
27	F26A10.1	F26A10.1	n/a	chrX 7,627,709
28	tag-196	F41E6.6	n/a	chrV 8,596,111	C. elegans TAG-196 protein; contains similarity to Pfam domains PF08246 (Cathepsin propeptide inhibitor domain (I29)) , PF00112 (Papain family cysteine protease) , PF00031 (Cystatin domain) contains similarity to Interpro domains IPR013128 (Peptidase C1A, papain), IPR000010 (Proteinase inhibitor I25, cystatin), IPR000169 (Peptidase, cysteine peptidase active site), IPR013201 (Proteinase inhibitor I29, cathepsin propeptide), IPR000668 (Peptidase C1A, papain C-terminal)
29	F25E2.3	F25E2.3	n/a	chrX 812,150	contains similarity to Pfam domain PF02551 Acyl-CoA thioesterase contains similarity to Interpro domain IPR003703 (Acyl-CoA thioesterase)
30	srr-5	C13D9.2	n/a	chrV 5,009,463	C. elegans SRR-5 protein; contains similarity to Pfam domain PF03268 Caenorhabditis protein of unknown function, DUF267 contains similarity to Interpro domains IPR004950 (Protein of unknown function DUF267, Caenorhabditis species), IPR000146 (Inositol phosphatase/fructose-1,6-bisphosphatase)
31	C01G10.1	C01G10.1	n/a	chrV 15,102,337	contains similarity to Pfam domains PF02206 (Domain of unknown function) , PF00023 (Ankyrin repeat) , PF00533 (BRCA1 C Terminus (BRCT) domain) contains similarity to Interpro domains IPR002110 (Ankyrin), IPR003125 (Protein of unknown function WSN), IPR001357 (BRCT)
32	glb-22	R11H6.3	n/a	chrV 14,605,162	glb-22 encodes a globin with no obvious function in mass RNAi assays.
33	F35B3.3	F35B3.3	n/a	chrX 17,013,662
34	F57C7.4	F57C7.4	n/a	chrX 10,585,230	contains similarity to Interpro domain IPR008972 ()
35	duo-2	F29C4.5	n/a	chrIV 113,683	C. elegans DUO-2 protein; contains similarity to Pfam domains PF00443 (Ubiquitin carboxyl-terminal hydrolase) , PF02338 (OTU-like cysteine protease) contains similarity to Interpro domains IPR003323 (Ovarian tumour, otubain), IPR001394 (Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2)
36	nhr-140	C33G8.9	n/a	chrV 6,988,762	C. elegans NHR-140 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
37	C09G5.7	C09G5.7	n/a	chrII 10,715,547	contains similarity to Homo sapiens Putative uncharacterized protein (Fragment); ENSEMBL:ENSP00000333119
38	T16A9.3	T16A9.3	n/a	chrV 14,208,326	contains similarity to Pfam domain PF06887 Protein of unknown function (DUF1265) contains similarity to Interpro domains IPR000210 (BTB/POZ-like), IPR011333 (BTB/POZ fold), IPR009676 (Protein of unknown function DUF1265)
39	T16A1.4	T16A1.4	n/a	chrII 2,081,787
40	bbs-5	R01H10.6	n/a	chrIII 10,260,159	C. elegans BBS-5 protein; contains similarity to Pfam domain PF07289 Protein of unknown function (DUF1448) contains similarity to Interpro domains IPR006606 (Protein of unknown function DUF1448), IPR008162 (Inorganic pyrophosphatase), IPR014003 (Protein of unknown function DM16)
41	T24A6.2	T24A6.2	n/a	chrV 3,558,528
42	Y62H9A.2	Y62H9A.2	n/a	chrX 11,877,730	contains similarity to Homo sapiens Angiomotin; ENSEMBL:ENSP00000305557
43	F15H10.5	F15H10.5	n/a	chrV 10,418,359	contains similarity to Borrelia burgdorferi Hypothetical protein BB0170.; TR:O51192
44	nhr-79	T26H2.9	n/a	chrV 19,209,750	C. elegans NHR-79 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR001723 (Steroid hormone receptor), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
45	C31H5.5	C31H5.5	n/a	chrI 9,048,863	contains similarity to Mus musculus Eukaryotic translation initiation factor 2 subunit 2 (Eukaryoticstranslation initiation factor 2 beta subunit) (eIF-2-beta).; SW:IF2B_MOUSE
46	Y44A6D.3	Y44A6D.3	n/a	chrV 20,786,983	contains similarity to Interpro domain IPR009057 (Homeodomain-like)
47	daf-10	F23B2.4	n/a	chrIV 9,141,552	daf-10 encodes a WD- and WAA-repeat containing protein that is the C. elegans ortholog of intraflagellar transport (IFT) complex A component IFT122; daf-10 activity is required for intraflagellar transport and thus for proper development of amphid and phasmid neurons, dauer development, chemotaxis, and normal lifespan; a DAF-10::GFP fusion protein undergoes both anterograde and retrograde intraflagellar transport in amphid or phasmid sensory neurons.
48	Y43F8C.5	Y43F8C.5	n/a	chrV 19,631,978	contains similarity to Dictyostelium discoideum Myb-like protein (Fragment).; SW:MYBH_DICDI
49	cnc-7	F53H2.2	n/a	chrV 20,389,778	C. elegans CNC-7 protein ;
50	R07A4.4	R07A4.4	n/a	chrX 10,753,200	contains similarity to Pfam domain PF00024 PAN domain contains similarity to Interpro domains IPR000884 (Thrombospondin, type I), IPR003609 (Apple-like), IPR003014 (N/apple PAN), IPR008266 (Tyrosine protein kinase, active site)