UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	fbxa-161	C08E3.4	9e-111	chrII 1,607,102	C. elegans FBXA-161 protein; contains similarity to Pfam domain PF01827 FTH domain contains similarity to Interpro domain IPR002900 (Protein of unknown function DUF38, Caenorhabditis species)
2	nhr-79	T26H2.9	n/a	chrV 19,209,750	C. elegans NHR-79 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR001723 (Steroid hormone receptor), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
3	C40C9.4	C40C9.4	n/a	chrX 13,651,413	contains similarity to Saccharomyces cerevisiae Protein with a putative role in sister chromatid segregation, potentially phosphorylated by Cdc28p; green fluorescent protein (GFP)-fusion protein localizes to the nuclear periphery; SGD:YML034W
4	F48C1.8	F48C1.8	n/a	chrI 5,335,938	contains similarity to Interpro domains IPR002952 (Eggshell protein), IPR002395 (HMW kininogen), IPR000817 (Prion protein), IPR008119 (Dense granule Gra6 protein)
5	grd-9	C04E6.6	n/a	chrV 5,896,978	grd-9 encodes a hedgehog-like protein, with an N-terminal signal sequence, a central low-complexity proline-rich domain, and a C-terminal Ground domain; the Ground domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins; GRD-9 is weakly required for normal molting; GRD-9 is also required for normal growth to full size, locomotion, and male tail development; all of these requirements may reflect common defects in cholesterol-dependent hedgehog-like signalling or in vesicle trafficking.
6	F18G5.6	F18G5.6	n/a	chrX 9,263,128
7	C50F4.9	C50F4.9	n/a	chrV 9,523,727	contains similarity to Streptococcus agalactiae Hypothetical protein.; TR:Q8E2N5
8	K01D12.10	K01D12.10	n/a	chrV 12,406,600	contains similarity to Interpro domains IPR002952 (Eggshell protein), IPR003072 (Orphan nuclear receptor, NOR1 type), IPR003982 (Leukotriene B4 type 2 receptor)
9	twk-7	F22B7.7	n/a	chrIII 8,638,816	C. elegans TWK-7 protein; contains similarity to Pfam domain PF07885 Ion channel contains similarity to Interpro domains IPR003280 (Potassium channel, two pore-domain), IPR013099 (Ion transport 2), IPR003092 (Potassium channel, two pore-domain, TASK)
10	R03H10.1	R03H10.1	n/a	chrII 4,181,882	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
11	C27H5.6	C27H5.6	n/a	chrII 7,186,228
12	glb-15	F35B12.8	n/a	chrV 11,617,517	glb-15 encodes a globin with no obvious function in mass RNAi assays.
13	F17E9.2	F17E9.2	n/a	chrIV 8,356,187
14	C13A2.7	C13A2.7	n/a	chrV 7,266,655
15	R03H4.5	R03H4.5	n/a	chrV 9,020,799	contains similarity to Pfam domain PF01757 Acyltransferase family contains similarity to Interpro domain IPR002656 (Acyltransferase 3)
16	Y43F8B.9	Y43F8B.9	n/a	chrV 19,479,769
17	ttr-19	C12D8.4	n/a	chrV 10,227,127	C. elegans TTR-19 protein; contains similarity to Pfam domain PF01060 Transthyretin-like family contains similarity to Interpro domain IPR001534 (Transthyretin-like)
18	K04F1.12	K04F1.12	n/a	chrV 1,656,168	contains similarity to Pfam domain PF01030 Receptor L domain contains similarity to Interpro domain IPR000494 (EGF receptor, L domain)
19	T27F2.4	T27F2.4	n/a	chrV 11,650,405	contains similarity to Interpro domain IPR004827 (Basic-leucine zipper (bZIP) transcription factor)
20	flp-14	Y37D8A.15	n/a	chrIII 12,912,600	flp-14 encodes four copies of a single FMRFamide-related short peptide neurotransmitter; FLP-14 can increase pharyngeal action potential frequency, although its exact role in C. elegans neurotransmission is not yet clear.
21	W07B8.4	W07B8.4	n/a	chrV 1,131,011	contains similarity to Pfam domain PF00112 Papain family cysteine protease contains similarity to Interpro domains IPR013128 (Peptidase C1A, papain), IPR000169 (Peptidase, cysteine peptidase active site), IPR000668 (Peptidase C1A, papain C-terminal)
22	nhr-260	C38C3.9	n/a	chrV 1,510,828	C. elegans NHR-260 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR001723 (Steroid hormone receptor), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
23	clec-249	Y51A2A.7	n/a	chrV 18,304,784	C. elegans CLEC-249 protein; contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
24	F57E7.2	F57E7.2	n/a	chrV 16,482,980	contains similarity to Psilotum nudum Hypothetical protein.; TR:Q8WHW9
25	F49C12.10	F49C12.10	n/a	chrIV 9,318,735	contains similarity to Pfam domain PF08241 Methyltransferase domain contains similarity to Interpro domain IPR013216 (Methyltransferase type 11)
26	F47B8.3	F47B8.3	n/a	chrV 14,322,155	contains similarity to Pfam domain PF00462 Glutaredoxin contains similarity to Interpro domains IPR002109 (Glutaredoxin), IPR012336 (Thioredoxin-like fold)
27	H12D21.4	H12D21.4	n/a	chrV 14,892,420	contains similarity to Pfam domain PF00581 Rhodanese-like domain contains similarity to Interpro domains IPR001763 (Rhodanese-like), IPR001307 (Thiosulphate sulphurtransferase, conserved site)
28	C14A6.2	C14A6.2	n/a	chrV 18,151,568	contains similarity to Pfam domain PF07690 Major Facilitator Superfamily contains similarity to Interpro domains IPR007114 (Major facilitator superfamily), IPR001991 (Sodium:dicarboxylate symporter), IPR011701 (Major facilitator superfamily MFS-1), IPR016196 (MFS general substrate transporter)
29	K09D9.9	K09D9.9	n/a	chrV 3,993,382
30	B0546.3	B0546.3	n/a	chrIV 3,380,351	contains similarity to Pfam domain PF03226 Yippee putative zinc-binding protein contains similarity to Interpro domain IPR004910 (Yippee-like protein)
31	K08D9.6	K08D9.6	n/a	chrV 3,233,173	contains similarity to Pfam domain PF01697 Domain of unknown function contains similarity to Interpro domains IPR008167 (Protein of unknown function DUF23, C-terminal), IPR008166 (Protein of unknown function DUF23)
32	Y106G6D.6	Y106G6D.6	n/a	chrI 10,120,080	contains similarity to Interpro domain IPR016054 (Ly-6 antigen / uPA receptor -like)
33	K05F6.10	K05F6.10	n/a	chrII 1,575,342	contains similarity to Pfam domain PF00917 MATH domain contains similarity to Interpro domain IPR002083 (MATH)
34	K06H6.6	K06H6.6	n/a	chrV 584,556	contains similarity to Pfam domain PF01531 Glycosyl transferase family 11 contains similarity to Interpro domain IPR002516 (Glycosyl transferase, family 11)
35	T08G5.2	T08G5.2	n/a	chrV 14,025,155	contains similarity to Homo sapiens Galactoside 2-alpha-L-fucosyltransferase 1; ENSEMBL:ENSP00000312021
36	Y38H6C.19	Y38H6C.19	n/a	chrV 20,548,064	contains similarity to Pfam domain PF03762 Vitelline membrane outer layer protein I (VOMI) contains similarity to Interpro domain IPR005515 (Vitelline membrane outer layer protein I (VOMI))
37	F46B3.7	F46B3.7	n/a	chrV 20,613,776	contains similarity to Pfam domain PF03380 Caenorhabditis protein of unknown function, DUF282 contains similarity to Interpro domain IPR005044 (Protein of unknown function DUF282, Caenorhabditis species)
38	cpx-2	K03A11.2	n/a	chrX 13,067,761	C. elegans CPX-2 protein; contains similarity to Pfam domain PF05835 Synaphin protein contains similarity to Interpro domain IPR008849 (Synaphin)
39	F58H7.7	F58H7.7	n/a	chrIV 911,281	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
40	srbc-77	T05G11.2	n/a	chrV 15,930,607	C. elegans SRBC-77 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
41	W03D2.7	W03D2.7	n/a	chrIV 4,062,904
42	T12A2.5	T12A2.5	n/a	chrIII 6,236,471
43	F25E5.9	F25E5.9	n/a	chrV 7,437,693
44	tag-243	T04A8.4	n/a	chrIII 4,686,618	C. elegans TAG-243 protein; contains similarity to Interpro domain IPR000637 (HMG-I and HMG-Y, DNA-binding)
45	T28A11.3	T28A11.3	n/a	chrV 3,275,745	contains similarity to Pfam domain PF01579 Domain of unknown function DUF19 contains similarity to Interpro domains IPR016638 (Uncharacterised conserved protein UPF0376), IPR002542 (Protein of unknown function DUF19)
46	C18H7.9	C18H7.9	n/a	chrIV 603,317	contains similarity to Pfam domains PF08242 (Methyltransferase domain) , PF08241 (Methyltransferase domain) contains similarity to Interpro domains IPR013217 (Methyltransferase type 12), IPR013216 (Methyltransferase type 11)
47	E03H4.5	E03H4.5	n/a	chrI 12,414,766	contains similarity to Pfam domain PF01697 Domain of unknown function contains similarity to Interpro domain IPR008166 (Protein of unknown function DUF23)
48	clec-5	C35D10.14	n/a	chrIII 4,882,708	C. elegans CLEC-5 protein; contains similarity to Pfam domains PF00431 (CUB domain) , PF00059 (Lectin C-type domain) (2)contains similarity to Interpro domains IPR000859 (CUB), IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR013838 (Beta tubulin, autoregulation binding site), IPR001304 (C-type lectin)
49	T05C3.2	T05C3.2	n/a	chrV 5,498,362	The T05C3.2 gene encodes a protein that may be involved in apoptosis.
50	B0554.1	B0554.1	n/a	chrV 438,570