UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	C04G2.9	C04G2.9	0	chrIV 10,113,525	contains similarity to Ascaris suum MFP2b.; TR:Q7YXJ9
2	ZC262.1	ZC262.1	n/a	chrIII 8,341,087
3	F36D3.4	F36D3.4	n/a	chrV 16,517,063	contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein), IPR005819 (Histone H5)
4	ssp-31	ZK1225.6	n/a	chrI 13,219,303	C. elegans SSP-31 protein; contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein)
5	F21H7.5	F21H7.5	n/a	chrV 16,238,153	contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein)
6	ZK512.8	ZK512.8	n/a	chrIII 9,146,610	contains similarity to Saccharomyces cerevisiae CDC5 is dispensable for premeiotic DNA synthesis and recombination, but required for tripartite synaptonemal complexes, haploidization, and spores; SGD:YMR001C
7	K05F1.3	K05F1.3	n/a	chrII 5,795,290	contains similarity to Pfam domains PF08028 (Acyl-CoA dehydrogenase, C-terminal domain) , PF02770 (Acyl-CoA dehydrogenase, middle domain) , PF00441 (Acyl-CoA dehydrogenase, C-terminal domain) , PF02771 (Acyl-CoA dehydrogenase, N-terminal domain) contains similarity to Interpro domains IPR013107 (Acyl-CoA dehydrogenase, type 2, C-terminal), IPR006090 (Acyl-CoA oxidase/dehydrogenase, type 1), IPR013786 (Acyl-CoA dehydrogenase/oxidase, N-terminal), IPR006091 (Acyl-CoA dehydrogenase/oxidase, central region), IPR006089 (Acyl-CoA dehydrogenase, conserved site), IPR013764 (Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal), IPR009100 (Acyl-CoA dehydrogenase/oxidase, middle and N-terminal), IPR009075 (Acyl-CoA dehydrogenase/oxidase C-terminal), IPR006092 (Acyl-CoA dehydrogenase, N-terminal)
8	ZK265.3	ZK265.3	4e-67	chrI 8,242,831	contains similarity to Ascaris suum MFP2.; TR:Q7YXK2
9	C05C12.5	C05C12.5	n/a	chrIV 11,260,772	contains similarity to Homo sapiens cDNA FLJ10106 fis, clone HEMBA1002569, highly similar to Homo sapiens protein associated with Myc mRNA (Fragment); ENSEMBL:ENSP00000353197
10	F23C8.7	F23C8.7	n/a	chrI 2,423,740	contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) , PF00017 (SH2 domain) contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related), IPR000980 (SH2 motif), IPR008266 (Tyrosine protein kinase, active site)
11	F32B5.4	F32B5.4	n/a	chrI 2,692,274
12	C02F5.5	C02F5.5	n/a	chrIII 8,236,454
13	Y57A10B.7	Y57A10B.7	n/a	chrII 12,393,162	contains similarity to Rattus norvegicus Merlin (Schwannomin) (Neurofibromin 2) (Fragment).; SW:MERL_RAT
14	R10E9.2	R10E9.2	n/a	chrIII 3,963,390	contains similarity to Arabidopsis thaliana Hypothetical protein (At2g34570).; TR:Q8GWS9
15	gsp-4	T03F1.5	n/a	chrI 3,838,957	C. elegans GSP-4 protein; contains similarity to Pfam domain PF00149 Calcineurin-like phosphoesterase contains similarity to Interpro domains IPR004843 (Metallophosphoesterase), IPR006186 (Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase)
16	F36D1.4	F36D1.4	n/a	chrI 11,272,019	contains similarity to Homo sapiens Splice isoform C-alpha of O95644 Nuclear factor of activated T-cells, cytoplasmic 1; SW:O95644
17	pph-2	C29E6.3	n/a	chrIV 11,876,957	C. elegans PPH-2 protein; contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000387 (Protein-tyrosine phosphatase)
18	mab-9	T27A1.6	n/a	chrII 518,813	mab-9 encodes a member of the T-box family of transcriptional regulators containing a 200-amino acid T-box DNA-binding domain most similar to mouse Brachyury; mab-9 is involved in hindgut and male tail development, specifically affecting the fate of two posterior blast cells in the hindgut, B and F; in the male this results in a grossly abnormal tail lacking spicules, and renders them incapable of mating; in the hermaphrodite this results in hindgut defects; mab-9 may also be part of a network of T-box genes that includes tbx-8, tbx-9 and vab-7 and is important for the correct patterning of posterior cells in the developing embryo; mab-9 affects movement to some extent though the basis for this defect is unknown; MAB-9 localizes to the nucleus of B and F and their descendents during development.
19	clec-251	F11D11.8	n/a	chrV 18,746,563	C. elegans CLEC-251 protein; contains similarity to Pfam domain PF08277 PAN-like domain contains similarity to Interpro domains IPR006583 (CW), IPR016187 (C-type lectin fold)
20	Y43F8C.3	Y43F8C.3	n/a	chrV 19,618,472	contains similarity to Pfam domain PF00651 BTB/POZ domain contains similarity to Interpro domains IPR000210 (BTB/POZ-like), IPR011333 (BTB/POZ fold), IPR013069 (BTB/POZ)
21	T21G5.4	T21G5.4	n/a	chrI 6,873,167	contains similarity to Interpro domain IPR001478 (PDZ/DHR/GLGF)
22	ZK1251.1	ZK1251.1	n/a	chrIV 9,683,245	contains similarity to Pfam domains PF00808 (Histone-like transcription factor (CBF/NF-Y) and archaeal histone) , PF00125 (Core histone H2A/H2B/H3/H4) contains similarity to Interpro domains IPR009072 (Histone-fold), IPR007125 (Histone core), IPR002119 (Histone H2A), IPR003958 (Transcription factor CBF/NF-Y/archaeal histone)
23	F58A6.5	F58A6.5	n/a	chrII 5,147,698	contains similarity to Pfam domain PF05884 Caenorhabditis elegans protein of unknown function (DUF856) contains similarity to Interpro domain IPR008574 (Protein of unknown function DUF856, Caenorhabditis species)
24	E03H12.5	E03H12.5	n/a	chrIV 4,977,628	contains similarity to Interpro domains IPR000694 (Proline-rich region), IPR005819 (Histone H5), IPR001946 (Adrenergic receptor, alpha-2A)
25	Y37D8A.5	Y37D8A.5	n/a	chrIII 12,854,726	contains similarity to Pfam domain PF05884 Caenorhabditis elegans protein of unknown function (DUF856) contains similarity to Interpro domains IPR001991 (Sodium:dicarboxylate symporter), IPR008574 (Protein of unknown function DUF856, Caenorhabditis species)
26	F41G4.4	F41G4.4	n/a	chrX 16,830,293
27	T21E12.5	T21E12.5	n/a	chrI 4,412,759
28	F53B6.4	F53B6.4	n/a	chrI 8,948,016	contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein)
29	Y106G6A.4	Y106G6A.4	n/a	chrI 9,931,412	contains similarity to Homo sapiens Splice isoform 3 of Q99963 SH3-containing GRB2-like protein 3; ENSEMBL:ENSP00000321799
30	nspd-4	T23B7.1	n/a	chrII 4,842,734	C. elegans NSPD-4 protein; contains similarity to Pfam domain PF05611 Caenorhabditis elegans protein of unknown function (DUF780) contains similarity to Interpro domain IPR008498 (Protein of unknown function DUF780, Caenorhabditis species)
31	C43G2.3	C43G2.3	n/a	chrIV 6,578,783
32	Y106G6D.3	Y106G6D.3	n/a	chrI 10,113,137	contains similarity to Ensis minor Nuclear protein.; TR:Q24898
33	F58E6.5	F58E6.5	n/a	chrV 9,753,985	contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein)
34	K01H12.4	K01H12.4	n/a	chrIV 9,714,029	contains similarity to Simian T-lymphotropic virus 1 Rex p27 protein (Fragment).; TR:O12387
35	F44F4.10	F44F4.10	n/a	chrII 10,916,498	F44F4.1 encodes a nematode-specific sperm protein probably required for a normally high ovulation rate; F44F4.1 has no obvious non-nematode homologs, but does have a putative central coiled-coil domain, and is is paralogous to four other C. elegans proteins (B0207.11, F42G4.6, T08G11.2, and Y81G3A.1); F44F4.1(tm332) hermaphrodites show abnormal egg-laying, retaining significantly fewer eggs than wild-type (perhaps due to a lowered ovulation rate) while retaining late-stage embryos; F44F4.1 has no obvious phenotype in mass RNAi experiments, possibly because of genetic redundancy with its paralogs; F44F4.1 expression is enriched in spermatogenesis.
36	T16A9.5	T16A9.5	n/a	chrV 14,214,256	contains similarity to Pfam domain PF05884 Caenorhabditis elegans protein of unknown function (DUF856) contains similarity to Interpro domains IPR001991 (Sodium:dicarboxylate symporter), IPR008574 (Protein of unknown function DUF856, Caenorhabditis species)
37	sfxn-1.2	F37H8.4	n/a	chrII 11,186,977	C. elegans SFXN-1.2 protein; contains similarity to Pfam domain PF03820 Tricarboxylate carrier contains similarity to Interpro domain IPR004686 (Tricarboxylate/iron carrier)
38	Y106G6H.13	Y106G6H.13	n/a	chrI 10,471,577	contains similarity to Bacillus cereus Hypothetical membrane spanning protein.; TR:Q813N7
39	rmd-3	B0491.3	n/a	chrII 11,338,942	C. elegans RMD-3 protein ; contains similarity to Dictyostelium discoideum Putative uncharacterized protein.; TR:Q54XR4
40	C15H7.3	C15H7.3	n/a	chrIII 9,651,090	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000387 (Protein-tyrosine phosphatase)
41	C25G4.6	C25G4.6	n/a	chrIV 12,455,616	contains similarity to Interpro domain IPR001478 (PDZ/DHR/GLGF)
42	spe-11	F48C1.7	n/a	chrI 5,331,412	spe-11 encodes a novel protein that is required for early embryonic development and for regulating the dynamic morphology of sperm pseudopods; although the precise biological role of SPE-11 is not yet known, SPE-11 is one of the few paternally provided proteins known to be essential for embryogenesis, and may constitute a sperm-associated factor required for oocyte activation; SPE-11 is first detected in the nuclei of primary spermatocytes and then remains tightly associated with sperm chromatin until fertilization at which point it appears to be degraded.
43	T05F1.5	T05F1.5	n/a	chrI 9,634,552	contains similarity to Cyanidium caldarium Phycobilisome linker polypeptide (Anchor polypeptide) (PBS-anchorsprotein).; SW:APCE_CYACA
44	C24D10.2	C24D10.2	n/a	chrIV 5,163,991	contains similarity to Interpro domain IPR000079 (High mobility group protein HMG14 and HMG17)
45	E03H12.7	E03H12.7	n/a	chrIV 4,988,167	contains similarity to Danio rerio Protein FAM133.; SW:A1A5I1
46	C16A11.7	C16A11.7	n/a	chrII 4,256,423
47	F40H6.1	F40H6.1	n/a	chrIII 6,057,696
48	C35E7.9	C35E7.9	n/a	chrI 10,807,562	contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein), IPR005819 (Histone H5)
49	F32H2.7	F32H2.7	n/a	chrI 8,996,424	contains similarity to Staphylococcus staphylolyticus Lysostaphin precursor (EC 3.4.24.75) (Glycyl-glycine endopeptidase).; SW:LSTP_STAST
50	C03C11.1	C03C11.1	n/a	chrI 10,015,075	contains similarity to Pfam domain PF03057 Protein of unknown function contains similarity to Interpro domains IPR004296 (Protein of unknown function DUF236), IPR002952 (Eggshell protein)