Affine Alignment
 
Alignment between Y20C6A.1 (top Y20C6A.1 984aa) and fbxa-2 (bottom T13F3.5 300aa) score 1995

643 SLISTNYQAMKSIIEKCSFVTILSLRKVCKNLRNFID-------TAHFDFPERNIWITFD 695
    +|++   +    |+||   +  |+ ||||| |+  +|       +  |    |   |  +
009 TLLNMPLEVANQILEKLEPIYQLTSRKVCKCLKTSVDKLGTHFYSITFHILSREAHIQLN 068

696 GKDSMLEIITPEGKTSLTYKKNPIGCKLLAYPPIPYGSDFIATRMMPDNTPLDCCMSDLK 755
    | + +  |  |   | + | +            |  | +||           +   +||+
069 GTE-IKYIDAPNASTYVIYNEQ---------KKIIQGENFI-----------NLAFNDLQ 107

756 QILKHQKTPISKLAFTL-RSIDDEYIHKLKEILKAHETPLKVKCIVMLGVDLPIIRRILS 814
     +||+   ||||  |   +|| |  + +| +++| +   + +| |      +  +  |  
108 LLLKN---PISKFEFLEDKSIQDNGL-RLLDVMKQNGR-VHLKSIKFSHCSIDDVLPIFP 162

815 YLDKNELKMI----FLNYDAYSRVEEEELDTTKLVELDQWKMAEELRVLDCGLSFSVEN- 869
    ||+   ++ |    | + | + |+           +||||| |+            +|| 
163 YLNAQVVEEIELYFFKSADGFDRIR----------DLDQWKNAKSFTYYSL---VPMENN 209

870 ----IGHFLKVEVTLRTISVEDLVYLKEIFKTSSANRN-FNIKSRSFDAGDLVPT 919
        + ||    +||    ++| + +++    +  ||+ | | + +| | +  |+
210 QTMHMFHFEHFTLTLDKFLLQDAIQIRD----NVLNRSTFEICNINFRASNATPS 260