Affine Alignment
 
Alignment between srd-43 (top R04D3.9 332aa) and srd-66 (bottom Y39A3B.4 323aa) score 2584

011 PLVFIVSLCFQSTLIYTIIRHSPKNISTLKSILLINSCFQLVQSSMAFFSQVRYVSNLVP 070
    |+ |++       +   |   +   +  ++ +|   +    +    ||  | | + |   
013 PIYFLLCSSLFLAMFILIYNFTTPILKPMRFLLYPANAAMTISIPSAFAMQARTLDNEHS 072

071 LELWSYGPCRHFEAFICYSTFHVLQTSSLISALTVFLTTFMKYQAAKHVHLSEKKT--WV 128
      |   | |++    +|    | | |+  ++|  + | | | |+     +|  ||   | 
073 QALLCDGFCKYIGPNVCL-ICHQLWTTFGMTACVINLHT-MYYRTICLKYLDPKKARWWT 130

129 VVCTILAIILVSTLEIKNISANVVNGCAISLVIMQALPLEIRQKYILINQSLDEYSVIGI 188
    ++ ++  |  +              |  | |+   +   ||  + + ++    ||     
131 LLYSVHYIFPL--------------GSHILLIFTPSSHEEIHNETLHLH---PEYDYTPY 173

189 VDYSVLPSRINATIVNGLVIIL-----PITCLLLRRKILKLLT--GPDRSSDALHSQNRI 241
    +|+    +  +  +   |++ +     ||     + + +|+|      ++| |  +  + 
174 LDFGGFDAFQSIYLGRALMMAIATFYSPIIGNYWKHQAMKMLKVHMSPQTSPAARAMIQT 233

242 FIQGLTLQIFCHTLVYVPIFVCSSISLVTKTEYIFPQYFIFVLPHLTTVIDPAVTMYFVT 301
     ++||  ||    + ||| |+       |  |+   ||   ||  |  ++|| | +||+|
234 LMKGLNFQILLPMISYVPQFLMVLFKKYTGQEFPNKQYLGTVLGALPCLLDPMVQIYFIT 293

302 PYRKKLIIWLRLKN 315
    |||  +  +|  |+
294 PYRNSIREFLECKS 307