Affine Alignment
 
Alignment between rfc-3 (top C39E9.13 354aa) and F44B9.8 (bottom F44B9.8 368aa) score 5320

004 WVDKYRPKDLLGKDGVDYHIEQANHL-KFLSADCMPHLLFCGPSGAGKKTRIKCLLRELY 062
    ||+||||  |   | +  | +    | ||+    +||||| || | || | +    |++|
031 WVEKYRPSKL---DELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARQMY 087

063 GVGVEKTQLIMKSFTSPSNKKLEIQTVSSNYHIEMTPSDVGIYDRVVVQDLVKEMAQTSQ 122
                   ||        |  ++  +|+  ||    |  ||++ +   |||  
088 ---------------SP--------TKMASMVLELNASDERGID--VVRNTIVNFAQTKG 122

123 IESTSQRS------FKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIVLSCESLSRIIEP 176
    +++ |  |      ||+|+| |||++|+|||+ ||| +||| +| +  + |  |+ |+  
123 LQAFSTSSNTGTVPFKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPA 182

177 LQSRCIIINVPAPTDED-VTKVLRKVIERESFLLPENVLQKIVEKSEGNLRRAILMTEAL 235
    +||||      || |+  +   |  ++| |   +  +    ++  |+|++|  |   ++ 
183 IQSRCTRFRF-APLDQKLIVPRLEYIVETEQLKMTPDGKDALLIVSKGDMRTVINTLQST 241

236 RME----NESGVAESVVIPVPEWEIYIQETARLILQKQSSDMLLKVRERLYE---LLSRC 288
     |     +|+ | + +  | |+    ++|  + +|   |   +  ++ +|+|    |   
242 AMSFDTVSENTVYQCIGQPTPK---EMKEVVKTLLNDPSKKCMNTIQTKLFENGYALQDV 298

289 IPPTVIFKKLLEHLLPKCPPQIAREVVSEAAKFEHRLVLGQKAIFHLEGFVAAFMD 344
    |     |   |+      | +    +++   + |  |  |      |   |||| +
299 ITHLHDFVFTLD-----IPDEAMSAIITGLGEVEENLSTGCSNETQLAAVVAAFFE 349