UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	C34D1.1	C34D1.1	1e-103	chrV 13,224,279	contains similarity to Pfam domain PF00751 (DM DNA binding domain)
2	K10C9.1	K10C9.1	n/a	chrV 1,077,400
3	F35G8.1	F35G8.1	n/a	chrX 9,317,241	contains similarity to Pfam domain PF00001 7 transmembrane receptor (rhodopsin family) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR005395 (Neuropeptide FF receptor), IPR000611 (Neuropeptide Y receptor), IPR000276 (GPCR, rhodopsin-like)
4	sri-20	AC3.1	n/a	chrV 10,369,184	C. elegans SRI-20 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
5	srw-84	Y43F8A.4	n/a	chrV 19,382,978	C. elegans SRW-84 protein; contains similarity to Interpro domain IPR017452 (GPCR, rhodopsin-like superfamily)
6	F54G2.2	F54G2.2	n/a	chrX 2,636,226	contains similarity to Pfam domain PF00098 Zinc knuckle contains similarity to Interpro domains IPR009007 (Peptidase aspartic, catalytic), IPR001969 (Peptidase aspartic, active site), IPR001878 (Zinc finger, CCHC-type)
7	Y26D4A.5	Y26D4A.5	n/a	chrI 13,076,809	contains similarity to Staphylococcus aureus Hypothetical protein SAV2385 (Hypothetical protein MW2305).; TR:Q99RP4
8	F45E12.6	F45E12.6	n/a	chrII 7,313,979
9	R10A10.1	R10A10.1	n/a	chrI 6,418,689
10	F35E2.1	F35E2.1	n/a	chrI 11,739,734	contains similarity to Pfam domain PF06681 Protein of unknown function (DUF1182) contains similarity to Interpro domains IPR002091 (Aromatic amino acid permease), IPR010601 (Protein of unknown function DUF1182)
11	F35F10.13	F35F10.13	n/a	chrV 3,318,633	contains similarity to Pfam domain PF01579 Domain of unknown function DUF19 contains similarity to Interpro domains IPR016638 (Uncharacterised conserved protein UPF0376), IPR002542 (Protein of unknown function DUF19)
12	fbxa-41	F52D2.1	n/a	chrX 1,949,939	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
13	sri-37	D2062.2	n/a	chrII 2,630,401	C. elegans SRI-37 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
14	W04A4.4	W04A4.4	n/a	chrI 13,676,809	contains similarity to Pfam domain PF00648 Calpain family cysteine protease contains similarity to Interpro domain IPR001300 (Peptidase C2, calpain)
15	T05B9.2	T05B9.2	n/a	chrII 11,257,607	contains similarity to Rattus norvegicus Fibrillin-2.; TR:Q9WUH9
16	srw-47	K10G4.2	n/a	chrV 17,261,345	C. elegans SRW-47 protein; contains similarity to Pfam domain PF06976 Protein of unknown function (DUF1300) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR010726 (Protein of unknown function DUF1300), IPR000276 (GPCR, rhodopsin-like)
17	Y38H6C.17	Y38H6C.17	n/a	chrV 20,537,681	Y38H6C.17 encodes a putative amino acid transporter that inhibits CEP-1- and HUS-1-dependent germline apoptosis, as do BMK-1, RAD-50, and RAD-51; Y38H6C.17 has 11 predicted transmembrane alpha-helices; Y38H6C.17 has multiple C. elegans paralogs and non-nematode orthologs, including budding yeast AVT3 and AVT4 and human SLC36A1 (OMIM:606561).
18	T05C1.1	T05C1.1	n/a	chrII 4,479,688
19	nhr-187	F47C10.4	n/a	chrV 3,861,996	C. elegans NHR-187 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
20	srh-32	Y26G10.2	n/a	chrV 17,702,215	C. elegans SRH-32 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
21	F21A10.4	F21A10.4	n/a	chrX 10,185,057	contains similarity to Mus musculus Tumor rejection antigen P815A.; SW:TUR8_MOUSE
22	Y62H9A.9	Y62H9A.9	n/a	chrX 11,896,785	contains similarity to Plasmodium falciparum Hypothetical protein.; TR:Q8I659
23	srsx-39	M01B2.9	n/a	chrV 15,255,926	C. elegans SRSX-39 protein; contains similarity to Pfam domain PF00001 7 transmembrane receptor (rhodopsin family) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR000276 (GPCR, rhodopsin-like)
24	sra-20	F28C12.4	n/a	chrI 12,697,375	C. elegans SRA-20 protein; contains similarity to Pfam domain PF02117 C.elegans Sra family integral membrane protein contains similarity to Interpro domain IPR000344 (Nematode chemoreceptor, Sra)
25	str-151	T03E6.1	n/a	chrV 16,577,135	C. elegans STR-151 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
26	sre-44	W07G1.2	n/a	chrII 13,950,633	C. elegans SRE-44 protein; contains similarity to Pfam domain PF03125 C. elegans Sre G protein-coupled chemoreceptor contains similarity to Interpro domain IPR004151 (C. elegans Sre G protein-coupled chemoreceptor)
27	srh-109	T19C9.4	n/a	chrV 17,219,817	C. elegans SRH-109 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
28	str-87	F59E11.16	n/a	chrV 8,987,304	C. elegans STR-87 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
29	srsx-17	F58D7.1	n/a	chrV 5,929,015	C. elegans SRSX-17 protein; contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR000276 (GPCR, rhodopsin-like)
30	srw-23	F49A5.8	n/a	chrV 16,874,669	C. elegans SRW-23 protein; contains similarity to Interpro domain IPR017452 (GPCR, rhodopsin-like superfamily)
31	sre-41	Y57A10B.5	n/a	chrII 12,388,981	C. elegans SRE-41 protein; contains similarity to Pfam domain PF03125 C. elegans Sre G protein-coupled chemoreceptor contains similarity to Interpro domain IPR004151 (C. elegans Sre G protein-coupled chemoreceptor)
32	F29A7.8	F29A7.8	n/a	chrII 2,757,825	contains similarity to Pfam domain PF08277 PAN-like domain contains similarity to Interpro domain IPR006583 (CW)
33	B0546.5	B0546.5	n/a	chrIV 3,389,078	contains similarity to Pfam domain PF06681 Protein of unknown function (DUF1182) contains similarity to Interpro domain IPR010601 (Protein of unknown function DUF1182)
34	srbc-79	B0250.6	n/a	chrV 20,487,016	C. elegans SRBC-79 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
35	C15H9.2	C15H9.2	n/a	chrX 6,119,566	contains similarity to Pfam domain PF00651 BTB/POZ domain contains similarity to Interpro domains IPR000210 (BTB/POZ-like), IPR011333 (BTB/POZ fold), IPR013069 (BTB/POZ)
36	T24C2.3	T24C2.3	n/a	chrX 14,544,021	contains similarity to Arabidopsis thaliana F25I16.10 protein.; TR:Q9FZ78
37	uvt-3	C42D8.3	n/a	chrX 5,090,152	C. elegans UVT-3 protein; contains similarity to Pfam domain PF03630 Fumble contains similarity to Interpro domains IPR002791 (Protein of unknown function DUF89), IPR015844 (Pantothenate kinase, acetyl-CoA regulated, two-domain type), IPR011602 (Fumble)
38	B0034.2	B0034.2	n/a	chrII 5,944,245
39	pha-2	M6.3	n/a	chrX 635,373	pha-2 encodes a homeodomain protein that is orthologous to vertebrate Hex proteins required for the development of B lymphocytes and organs derived from foregut endoderm; in C. elegans, pha-2 is essential for proper development and morphogenesis of the pm5 pharyngeal muscles cells during late stages of embryogenesis; in regulating pm5 fate specification, PHA-2 appears to act downstream of the organ identity factor PHA-4, and upstream of ceh-22, whose expression it may negatively regulate in pm5; a rescuing PHA-2::GFP reporter is expressed in pharyngeal cells, intestinal-rectal cells, and postembryonic head neurons.
40	C31E10.4	C31E10.4	n/a	chrX 13,989,751
41	T25E4.2	T25E4.2	n/a	chrII 5,581,240
42	C03A7.13	C03A7.13	n/a	chrV 5,191,814	contains similarity to Interpro domains IPR002048 (Calcium-binding EF-hand), IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)
43	F16G10.8	F16G10.8	n/a	chrII 2,382,692	contains similarity to Pfam domain PF02343 Domain of unknown function DUF130 contains similarity to Interpro domain IPR003326 (Protein of unknown function DUF130)
44	F54H5.3	F54H5.3	n/a	chrII 6,622,759	contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein)
45	twk-33	W06D12.5	n/a	chrV 17,712,140	C. elegans TWK-33 protein; contains similarity to Pfam domain PF07885 Ion channel contains similarity to Interpro domains IPR003280 (Potassium channel, two pore-domain), IPR013099 (Ion transport 2), IPR003092 (Potassium channel, two pore-domain, TASK)
46	C24G7.4	C24G7.4	n/a	chrI 4,096,469	contains similarity to Pfam domain PF00858 Amiloride-sensitive sodium channel contains similarity to Interpro domain IPR001873 (Na+ channel, amiloride-sensitive)
47	C36C5.15	C36C5.15	n/a	chrV 3,168,358	contains similarity to Pfam domain PF01579 Domain of unknown function DUF19 contains similarity to Interpro domains IPR016638 (Uncharacterised conserved protein UPF0376), IPR002542 (Protein of unknown function DUF19)
48	T10D4.3	T10D4.3	n/a	chrII 3,130,228	contains similarity to Pfam domain PF00704 Glycosyl hydrolases family 18 contains similarity to Interpro domains IPR011583 (Chitinase II), IPR017853 (Glycoside hydrolase, catalytic core), IPR001223 (Glycoside hydrolase, family 18, catalytic domain), IPR013781 (Glycoside hydrolase, subgroup, catalytic core)
49	F18H3.1	F18H3.1	n/a	chrX 13,520,521	contains similarity to Pfam domain PF00622 SPRY domain contains similarity to Interpro domains IPR001870 (B302, (SPRY)-like), IPR003877 (SPla/RYanodine receptor SPRY)
50	C45E5.2	C45E5.2	n/a	chrIV 5,742,716	contains similarity to Pfam domain PF00704 Glycosyl hydrolases family 18 contains similarity to Interpro domains IPR011583 (Chitinase II), IPR017853 (Glycoside hydrolase, catalytic core), IPR001223 (Glycoside hydrolase, family 18, catalytic domain), IPR013781 (Glycoside hydrolase, subgroup, catalytic core)