Human Gene ZNF384 (ENST00000683879.1_5) from GENCODE V47lift37
  Description: zinc finger protein 384, transcript variant 31 (from RefSeq NM_001385767.1)
Gencode Transcript: ENST00000683879.1_5
Gencode Gene: ENSG00000126746.19_14
Transcript (Including UTRs)
   Position: hg19 chr12:6,775,643-6,798,541 Size: 22,899 Total Exon Count: 12 Strand: -
Coding Region
   Position: hg19 chr12:6,776,880-6,788,686 Size: 11,807 Coding Exon Count: 10 

Page IndexSequence and LinksPrimersMalaCardsCTDGene Alleles
Microarray ExpressionRNA StructureOther SpeciesmRNA DescriptionsOther NamesModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:6,775,643-6,798,541)mRNA (may differ from genome)Protein (608 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblExonPrimerGeneCardsHGNCMalacards
MGIPubMedUniProtKBWikipedia

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ZNF384
Diseases sorted by gene-association score: acute leukemia (5), ewing sarcoma (3)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
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+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -148.90343-0.434 Picture PostScript Text
3' UTR -364.001237-0.294 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Descriptions from all associated GenBank mRNAs
  U80738 - Homo sapiens CAGH1a (CAGH1) mRNA, partial cds.
LF384193 - JP 2014500723-A/191696: Polycomb-Associated Non-Coding RNAs.
JD392150 - Sequence 373174 from Patent EP1572962.
JD291277 - Sequence 272301 from Patent EP1572962.
JD378786 - Sequence 359810 from Patent EP1572962.
BC053361 - Homo sapiens zinc finger protein 384, mRNA (cDNA clone MGC:61637 IMAGE:6012540), complete cds.
JD361758 - Sequence 342782 from Patent EP1572962.
JD219025 - Sequence 200049 from Patent EP1572962.
JD055431 - Sequence 36455 from Patent EP1572962.
JD530334 - Sequence 511358 from Patent EP1572962.
JD402918 - Sequence 383942 from Patent EP1572962.
JD057635 - Sequence 38659 from Patent EP1572962.
DQ595481 - Homo sapiens piRNA piR-61593, complete sequence.
JD121065 - Sequence 102089 from Patent EP1572962.
JD420948 - Sequence 401972 from Patent EP1572962.
JD042508 - Sequence 23532 from Patent EP1572962.
JD184649 - Sequence 165673 from Patent EP1572962.
AK095734 - Homo sapiens cDNA FLJ38415 fis, clone FEBRA2009567, highly similar to Rattus norvegicus clone NP/NMP4 21H nuclear matrix transcription factor mRNA.
JD343150 - Sequence 324174 from Patent EP1572962.
JD282766 - Sequence 263790 from Patent EP1572962.
JD249064 - Sequence 230088 from Patent EP1572962.
JD492904 - Sequence 473928 from Patent EP1572962.
JD083995 - Sequence 65019 from Patent EP1572962.
JD469417 - Sequence 450441 from Patent EP1572962.
JD084583 - Sequence 65607 from Patent EP1572962.
JD298792 - Sequence 279816 from Patent EP1572962.
JD279314 - Sequence 260338 from Patent EP1572962.
KJ905031 - Synthetic construct Homo sapiens clone ccsbBroadEn_14425 ZNF384 gene, encodes complete protein.
AB464396 - Synthetic construct DNA, clone: pF1KB5965, Homo sapiens ZNF384 gene for zinc finger protein 384, without stop codon, in Flexi system.
LF365865 - JP 2014500723-A/173368: Polycomb-Associated Non-Coding RNAs.
U23858 - Human clone mcag1 chromosome 12 CAG repeat region.
AK298962 - Homo sapiens cDNA FLJ54869 complete cds, highly similar to Zinc finger protein 384.
LF365864 - JP 2014500723-A/173367: Polycomb-Associated Non-Coding RNAs.
CU690964 - Synthetic construct Homo sapiens gateway clone IMAGE:100021783 5' read ZNF384 mRNA.
LF365862 - JP 2014500723-A/173365: Polycomb-Associated Non-Coding RNAs.
DQ323638 - Homo sapiens clone 47 nuclear matrix protein 4 mRNA, partial cds.
DQ323639 - Homo sapiens clone 48 nuclear matrix protein 4 mRNA, partial cds.
EU155119 - Homo sapiens E2A-NMP4 fusion protein (TCF3-ZNF384 fusion) mRNA, partial cds.
EF613330 - Homo sapiens TCF3-ZNF384 fusion protein mRNA, partial cds.
LF365859 - JP 2014500723-A/173362: Polycomb-Associated Non-Coding RNAs.
JD440563 - Sequence 421587 from Patent EP1572962.
JD205804 - Sequence 186828 from Patent EP1572962.
JD316549 - Sequence 297573 from Patent EP1572962.
MA619770 - JP 2018138019-A/191696: Polycomb-Associated Non-Coding RNAs.
MA601442 - JP 2018138019-A/173368: Polycomb-Associated Non-Coding RNAs.
MA601441 - JP 2018138019-A/173367: Polycomb-Associated Non-Coding RNAs.
MA601439 - JP 2018138019-A/173365: Polycomb-Associated Non-Coding RNAs.
MA601436 - JP 2018138019-A/173362: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: A0A804HJE2, A0A804HJE2_HUMAN, NM_001385767, uc330max.1, uc330max.2, ZNF384
UCSC ID: ENST00000683879.1_5
RefSeq Accession: NM_001385745.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.