Human Gene XPO7 (ENST00000252512.14_8) from GENCODE V47lift37
  Description: exportin 7, transcript variant 5 (from RefSeq NR_156173.2)
Gencode Transcript: ENST00000252512.14_8
Gencode Gene: ENSG00000130227.17_11
Transcript (Including UTRs)
   Position: hg19 chr8:21,777,173-21,864,096 Size: 86,924 Total Exon Count: 28 Strand: +
Coding Region
   Position: hg19 chr8:21,777,282-21,862,599 Size: 85,318 Coding Exon Count: 28 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:21,777,173-21,864,096)mRNA (may differ from genome)Protein (1087 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMGIOMIMPubMedUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: XPO7_HUMAN
DESCRIPTION: RecName: Full=Exportin-7; Short=Exp7; AltName: Full=Ran-binding protein 16;
FUNCTION: Mediates the nuclear export of proteins (cargos) with broad substrate specificity. In the nucleus binds cooperatively to its cargo and to the GTPase Ran in its active GTP-bound form. Docking of this trimeric complex to the nuclear pore complex (NPC) is mediated through binding to nucleoporins. Upon transit of a nuclear export complex into the cytoplasm, disassembling of the complex and hydrolysis of Ran-GTP to Ran-GDP (induced by RANBP1 and RANGAP1, respectively) cause release of the cargo from the export receptor. XPO7 then return to the nuclear compartment and mediate another round of transport. The directionality of nuclear export is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.
SUBUNIT: Binds to nucleoporins. Found in a complex with XPO7, EIF4A1, ARHGAP1, VPS26A, VPS29, VPS35 and SFN. Interacts with ARHGAP1 and SFN. Interacts with Ran and cargo proteins in a GTP- dependent manner.
SUBCELLULAR LOCATION: Cytoplasm. Nucleus (Probable). Nucleus, nuclear pore complex (Probable). Note=Shuttles between the nucleus and the cytoplasm (Probable).
TISSUE SPECIFICITY: Strong expression in testis, thyroid and bone marrow, low expression in lung, liver and small intestine, no expression in thymus, and remaining tissues studied have moderate expression. Expressed in red blood cells; overexpressed in red blood cells (cytoplasm) of patients with hereditary non- spherocytic hemolytic anemia of unknown etiology.
SIMILARITY: Belongs to the exportin family.
SIMILARITY: Contains 1 importin N-terminal domain.
SEQUENCE CAUTION: Sequence=BAA34465.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 27.16 RPKM in Testis
Total median expression: 731.27 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -44.00109-0.404 Picture PostScript Text
3' UTR -439.201497-0.293 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011989 - ARM-like
IPR016024 - ARM-type_fold
IPR001494 - Importin-beta_N

Pfam Domains:
PF03810 - Importin-beta N-terminal domain

SCOP Domains:
48371 - ARM repeat

ModBase Predicted Comparative 3D Structure on Q9UIA9
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
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 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005049 nuclear export signal receptor activity
GO:0005515 protein binding
GO:0008536 Ran GTPase binding

Biological Process:
GO:0006611 protein export from nucleus
GO:0006886 intracellular protein transport
GO:0015031 protein transport
GO:0051028 mRNA transport

Cellular Component:
GO:0005634 nucleus
GO:0005643 nuclear pore
GO:0005737 cytoplasm


-  Descriptions from all associated GenBank mRNAs
  BC030785 - Homo sapiens exportin 7, mRNA (cDNA clone MGC:32968 IMAGE:5269230), complete cds.
AK291472 - Homo sapiens cDNA FLJ76855 complete cds, highly similar to Homo sapiens exportin 7 (XPO7), mRNA.
AB018288 - Homo sapiens mRNA for KIAA0745 protein, partial cds.
AF064729 - Homo sapiens RAN binding protein 16 mRNA, complete cds.
CU689010 - Synthetic construct Homo sapiens gateway clone IMAGE:100020481 5' read XPO7 mRNA.
AB383974 - Synthetic construct DNA, clone: pF1KSDA0745, Homo sapiens XPO7 gene for exportin-7, complete cds, without stop codon, in Flexi system.
KJ898438 - Synthetic construct Homo sapiens clone ccsbBroadEn_07832 XPO7 gene, encodes complete protein.
AK311616 - Homo sapiens cDNA, FLJ18658.
AK299848 - Homo sapiens cDNA FLJ56596 complete cds, highly similar to Exportin-7.
BC014219 - Homo sapiens exportin 7, mRNA (cDNA clone IMAGE:3946839), partial cds.
JD155709 - Sequence 136733 from Patent EP1572962.
DQ598350 - Homo sapiens piRNA piR-36416, complete sequence.
JD068430 - Sequence 49454 from Patent EP1572962.
JD196310 - Sequence 177334 from Patent EP1572962.
JD184866 - Sequence 165890 from Patent EP1572962.
JD544257 - Sequence 525281 from Patent EP1572962.
JD045766 - Sequence 26790 from Patent EP1572962.
JD059306 - Sequence 40330 from Patent EP1572962.
JD420821 - Sequence 401845 from Patent EP1572962.
JD266191 - Sequence 247215 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000252512.1, ENST00000252512.10, ENST00000252512.11, ENST00000252512.12, ENST00000252512.13, ENST00000252512.2, ENST00000252512.3, ENST00000252512.4, ENST00000252512.5, ENST00000252512.6, ENST00000252512.7, ENST00000252512.8, ENST00000252512.9, KIAA0745, NR_156173, O94846, Q6PJK9, Q8NEK7, Q9UIA9, RANBP16, uc317fhn.1, uc317fhn.2, XPO7_HUMAN
UCSC ID: ENST00000252512.14_8
RefSeq Accession: NM_015024.5
Protein: Q9UIA9 (aka XPO7_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.