Human Gene DYNC2I2 (ENST00000372715.7_7) from GENCODE V47lift37
  Description: dynein 2 intermediate chain 2 (from RefSeq NM_052844.4)
Gencode Transcript: ENST00000372715.7_7
Gencode Gene: ENSG00000119333.12_10
Transcript (Including UTRs)
   Position: hg19 chr9:131,395,932-131,419,126 Size: 23,195 Total Exon Count: 9 Strand: -
Coding Region
   Position: hg19 chr9:131,396,023-131,419,005 Size: 22,983 Coding Exon Count: 9 

Page IndexSequence and LinksUniProtKB CommentsPrimersGene AllelesRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
PathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr9:131,395,932-131,419,126)mRNA (may differ from genome)Protein (536 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaAlphaFoldBioGPS
EnsemblEntrez GeneExonPrimerGeneCardsMGIOMIM
PubMedReactomeUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: WDR34_HUMAN
DESCRIPTION: RecName: Full=WD repeat-containing protein 34;
FUNCTION: Acts as a negative regulator of the Toll-like and IL-1R receptor signaling pathways. Inhibits the MAP3K7-induced NF-kappa- B activation pathway. Inhibits MAP3K7 phosphorylation at 'Thr-184' and 'Thr-187' upon Il-1 beta stimulation.
SUBUNIT: Interacts (via the WD domains) with MAP3K7 and TAB3. Interacts (via WD domains) with TAB2 (via C-terminus). Interacts (via WD domains) with TRAF6 (via TRAF-type domains).
SUBCELLULAR LOCATION: Cytoplasm.
TISSUE SPECIFICITY: Expressed in several cell lines (at protein level).
SIMILARITY: Contains 5 WD repeats.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


+  Common Gene Haplotype Alleles
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-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 51.80 RPKM in Testis
Total median expression: 649.54 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -48.00121-0.397 Picture PostScript Text
3' UTR -28.6091-0.314 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR015943 - WD40/YVTN_repeat-like_dom
IPR001680 - WD40_repeat
IPR017986 - WD40_repeat_dom

Pfam Domains:
PF00400 - WD domain, G-beta repeat

SCOP Domains:
50952 - Soluble quinoprotein glucose dehydrogenase
50956 - Thermostable phytase (3-phytase)
50960 - TolB, C-terminal domain
63825 - YWTD domain
63829 - Calcium-dependent phosphotriesterase
69304 - Tricorn protease N-terminal domain
101898 - NHL repeat
50965 - Galactose oxidase, central domain
75011 - 3-carboxy-cis,cis-mucoante lactonizing enzyme
101908 - Putative isomerase YbhE
117289 - Nucleoporin domain
50969 - YVTN repeat-like/Quinoprotein amine dehydrogenase
50974 - Nitrous oxide reductase, N-terminal domain
50978 - WD40 repeat-like
50985 - RCC1/BLIP-II
50993 - Peptidase/esterase 'gauge' domain
69322 - Tricorn protease domain 2
50998 - Quinoprotein alcohol dehydrogenase-like
51004 - C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
82171 - DPP6 N-terminal domain-like

ModBase Predicted Comparative 3D Structure on Q96EX3
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0045503 dynein light chain binding
GO:0045504 dynein heavy chain binding
GO:0008574 ATP-dependent microtubule motor activity, plus-end-directed

Biological Process:
GO:0035735 intraciliary transport involved in cilium assembly
GO:0042073 intraciliary transport
GO:0060271 cilium assembly

Cellular Component:
GO:0005737 cytoplasm
GO:0005814 centriole
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0005868 cytoplasmic dynein complex
GO:0005929 cilium
GO:0005930 axoneme
GO:0036064 ciliary basal body
GO:0042995 cell projection
GO:0097014 ciliary plasm
GO:0097542 ciliary tip


-  Descriptions from all associated GenBank mRNAs
  BC019028 - Homo sapiens cDNA clone IMAGE:4554675, **** WARNING: chimeric clone ****.
BC001614 - Homo sapiens WD repeat domain 34, mRNA (cDNA clone IMAGE:3535294), partial cds.
BC011874 - Homo sapiens WD repeat domain 34, mRNA (cDNA clone MGC:20486 IMAGE:3161070), complete cds.
JD486077 - Sequence 467101 from Patent EP1572962.
KJ903532 - Synthetic construct Homo sapiens clone ccsbBroadEn_12926 WDR34 gene, encodes complete protein.
KJ906384 - Synthetic construct Homo sapiens clone ccsbBroadEn_16054 WDR34 gene, encodes complete protein.
CU674788 - Synthetic construct Homo sapiens gateway clone IMAGE:100022464 5' read WDR34 mRNA.
CU680092 - Synthetic construct Homo sapiens gateway clone IMAGE:100018243 5' read WDR34 mRNA.
AK302098 - Homo sapiens cDNA FLJ57659 complete cds, highly similar to WD repeat protein 34.
JD383992 - Sequence 365016 from Patent EP1572962.
JD336994 - Sequence 318018 from Patent EP1572962.
JD234339 - Sequence 215363 from Patent EP1572962.
JD211291 - Sequence 192315 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q96EX3 (Reactome details) participates in the following event(s):

R-HSA-5624949 Assembly of the anterograde IFT train
R-HSA-5625424 The retrograde IFT train dissociates
R-HSA-5625421 The anterograde IFT train dissociates
R-HSA-5624952 Assembly of the retrograde IFT train
R-HSA-5620924 Intraflagellar transport
R-HSA-5617833 Cilium Assembly
R-HSA-1852241 Organelle biogenesis and maintenance

-  Other Names for This Gene
  Alternate Gene Symbols: DC2I2_HUMAN, DYNC2I2 , ENST00000372715.1, ENST00000372715.2, ENST00000372715.3, ENST00000372715.4, ENST00000372715.5, ENST00000372715.6, NM_052844, Q5VXV4, Q96EX3, Q9BV46, uc318kdr.1, uc318kdr.2, WDR34
UCSC ID: ENST00000372715.7_7
RefSeq Accession: NM_052844.4
Protein: Q96EX3 (aka WDR34_HUMAN or WD34_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.