Human Gene UGGT1 (ENST00000259253.11_4) from GENCODE V47lift37
  Description: UDP-glucose glycoprotein glucosyltransferase 1, transcript variant 2 (from RefSeq NR_027671.3)
Gencode Transcript: ENST00000259253.11_4
Gencode Gene: ENSG00000136731.13_7
Transcript (Including UTRs)
   Position: hg19 chr2:128,848,774-128,953,251 Size: 104,478 Total Exon Count: 41 Strand: +
Coding Region
   Position: hg19 chr2:128,848,932-128,947,316 Size: 98,385 Coding Exon Count: 41 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:128,848,774-128,953,251)mRNA (may differ from genome)Protein (1555 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedReactomeUniProtKB
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: UGGG1_HUMAN
DESCRIPTION: RecName: Full=UDP-glucose:glycoprotein glucosyltransferase 1; Short=UGT1; Short=hUGT1; EC=2.4.1.-; AltName: Full=UDP--Glc:glycoprotein glucosyltransferase; AltName: Full=UDP-glucose ceramide glucosyltransferase-like 1; Flags: Precursor;
FUNCTION: Recognizes glycoproteins with minor folding defects. Reglucosylates single N-glycans near the misfolded part of the protein, thus providing quality control for protein folding in the endoplasmic reticulum. Reglucosylated proteins are recognized by calreticulin for recycling to the endoplasmic reticulum and refolding or degradation.
COFACTOR: Calcium or manganese.
PATHWAY: Protein modification; protein glycosylation.
SUBUNIT: Monomer as well as in a tight complex with SEP15 (By similarity).
INTERACTION: P25942:CD40; NbExp=1; IntAct=EBI-1056389, EBI-525714; Q9NRB3:CHST12; NbExp=1; IntAct=EBI-1056389, EBI-1042837; P30450:HLA-A; NbExp=1; IntAct=EBI-1056389, EBI-1042870; P30457:HLA-A; NbExp=1; IntAct=EBI-1056389, EBI-1049899; Q9UGT4:SUSD2; NbExp=1; IntAct=EBI-1056389, EBI-1054721; Q92956:TNFRSF14; NbExp=1; IntAct=EBI-1056389, EBI-1056653; O95388:WISP1; NbExp=1; IntAct=EBI-1056389, EBI-1050638;
SUBCELLULAR LOCATION: Endoplasmic reticulum lumen. Endoplasmic reticulum-Golgi intermediate compartment.
TISSUE SPECIFICITY: Higher levels in pancreas, skeletal muscle, kidney, and brain. Low levels in lung and heart.
INDUCTION: By tunicamycin and A23187. Induced 3-4 fold 10 hours after treatment.
DOMAIN: The N-terminal non-catalytic domain is assumed to mediate recognition of proteins with partial folding defects (By similarity).
SIMILARITY: Belongs to the glycosyltransferase 8 family.
SEQUENCE CAUTION: Sequence=AAY14885.1; Type=Erroneous gene model prediction; Sequence=BAB14632.1; Type=Erroneous initiation;
WEB RESOURCE: Name=GGDB; Note=GlycoGene database; URL="http://riodb.ibase.aist.go.jp/rcmg/ggdb/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 11.89 RPKM in Cells - Cultured fibroblasts
Total median expression: 243.82 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -70.10158-0.444 Picture PostScript Text
3' UTR -2352.205935-0.396 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR009448 - UDP-g_GGtrans

Pfam Domains:
PF06427 - UDP-glucose:Glycoprotein Glucosyltransferase
PF18400 - Thioredoxin-like domain
PF18401 - Thioredoxin-like domain
PF18402 - Thioredoxin-like domain
PF18403 - Thioredoxin-like domain
PF18404 - Glucosyltransferase 24

SCOP Domains:
53448 - Nucleotide-diphospho-sugar transferases

ModBase Predicted Comparative 3D Structure on Q9NYU2
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserGenome Browser
Gene DetailsGene Details Gene DetailsGene DetailsGene Details
Gene SorterGene Sorter Gene SorterGene SorterGene Sorter
 RGDEnsembl WormBaseSGD
    Protein SequenceProtein Sequence
    AlignmentAlignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity
GO:0005515 protein binding
GO:0016740 transferase activity
GO:0016757 transferase activity, transferring glycosyl groups
GO:0051082 unfolded protein binding

Biological Process:
GO:0006486 protein glycosylation
GO:0018279 protein N-linked glycosylation via asparagine
GO:0030968 endoplasmic reticulum unfolded protein response
GO:0051084 'de novo' posttranslational protein folding
GO:0071712 ER-associated misfolded protein catabolic process
GO:0097359 UDP-glucosylation
GO:1904380 endoplasmic reticulum mannose trimming

Cellular Component:
GO:0005783 endoplasmic reticulum
GO:0005788 endoplasmic reticulum lumen
GO:0005793 endoplasmic reticulum-Golgi intermediate compartment
GO:0032991 macromolecular complex
GO:0044322 endoplasmic reticulum quality control compartment
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  LF383597 - JP 2014500723-A/191100: Polycomb-Associated Non-Coding RNAs.
AK309101 - Homo sapiens cDNA, FLJ99142.
AK293066 - Homo sapiens cDNA FLJ77398 complete cds, highly similar to Homo sapiens UDP-glucose ceramide glucosyltransferase-like 1, transcript variant 2, mRNA.
BC041098 - Homo sapiens UDP-glucose ceramide glucosyltransferase-like 1, mRNA (cDNA clone MGC:46056 IMAGE:5492334), complete cds.
AF227905 - Homo sapiens UDP-glucose:glycoprotein glucosyltransferase 1 precursor, mRNA, complete cds.
LF317337 - JP 2014500723-A/124840: Polycomb-Associated Non-Coding RNAs.
JD210669 - Sequence 191693 from Patent EP1572962.
LF317333 - JP 2014500723-A/124836: Polycomb-Associated Non-Coding RNAs.
LF317332 - JP 2014500723-A/124835: Polycomb-Associated Non-Coding RNAs.
LF317331 - JP 2014500723-A/124834: Polycomb-Associated Non-Coding RNAs.
LF317329 - JP 2014500723-A/124832: Polycomb-Associated Non-Coding RNAs.
LF317325 - JP 2014500723-A/124828: Polycomb-Associated Non-Coding RNAs.
LF317323 - JP 2014500723-A/124826: Polycomb-Associated Non-Coding RNAs.
LF317321 - JP 2014500723-A/124824: Polycomb-Associated Non-Coding RNAs.
LF317320 - JP 2014500723-A/124823: Polycomb-Associated Non-Coding RNAs.
LF317319 - JP 2014500723-A/124822: Polycomb-Associated Non-Coding RNAs.
AK074251 - Homo sapiens cDNA FLJ23671 fis, clone HEP05760, highly similar to Homo sapiens UDP-glucose:glycoprotein glucosyltransferase 1 precursor.
LF317318 - JP 2014500723-A/124821: Polycomb-Associated Non-Coding RNAs.
AK023671 - Homo sapiens cDNA FLJ13609 fis, clone PLACE1010662, moderately similar to UDP-GLUCOSE:GLYCOPROTEIN GLUCOSYLTRANSFERASE PRECURSOR (EC 2.4.1.-).
LF317317 - JP 2014500723-A/124820: Polycomb-Associated Non-Coding RNAs.
LF317316 - JP 2014500723-A/124819: Polycomb-Associated Non-Coding RNAs.
LF317315 - JP 2014500723-A/124818: Polycomb-Associated Non-Coding RNAs.
AK074376 - Homo sapiens cDNA FLJ23796 fis, clone HEP22122, highly similar to Homo sapiens UDP-glucose:glycoprotein glucosyltransferase 1 precursor.
LF317313 - JP 2014500723-A/124816: Polycomb-Associated Non-Coding RNAs.
LF317312 - JP 2014500723-A/124815: Polycomb-Associated Non-Coding RNAs.
LF317311 - JP 2014500723-A/124814: Polycomb-Associated Non-Coding RNAs.
LF317306 - JP 2014500723-A/124809: Polycomb-Associated Non-Coding RNAs.
LF317304 - JP 2014500723-A/124807: Polycomb-Associated Non-Coding RNAs.
LF317302 - JP 2014500723-A/124805: Polycomb-Associated Non-Coding RNAs.
LF317300 - JP 2014500723-A/124803: Polycomb-Associated Non-Coding RNAs.
AK023240 - Homo sapiens cDNA FLJ13178 fis, clone NT2RP3003914, weakly similar to UDP-GLUCOSE:GLYCOPROTEIN GLUCOSYLTRANSFERASE PRECURSOR (EC 2.4.1.-).
LF317298 - JP 2014500723-A/124801: Polycomb-Associated Non-Coding RNAs.
LF317296 - JP 2014500723-A/124799: Polycomb-Associated Non-Coding RNAs.
JD224716 - Sequence 205740 from Patent EP1572962.
LF317295 - JP 2014500723-A/124798: Polycomb-Associated Non-Coding RNAs.
LF317294 - JP 2014500723-A/124797: Polycomb-Associated Non-Coding RNAs.
JD204593 - Sequence 185617 from Patent EP1572962.
JD063161 - Sequence 44185 from Patent EP1572962.
JD277724 - Sequence 258748 from Patent EP1572962.
JD451218 - Sequence 432242 from Patent EP1572962.
JD098868 - Sequence 79892 from Patent EP1572962.
JD376137 - Sequence 357161 from Patent EP1572962.
JD376138 - Sequence 357162 from Patent EP1572962.
JD536214 - Sequence 517238 from Patent EP1572962.
JD142928 - Sequence 123952 from Patent EP1572962.
JD498017 - Sequence 479041 from Patent EP1572962.
JD498016 - Sequence 479040 from Patent EP1572962.
JD348908 - Sequence 329932 from Patent EP1572962.
JD507307 - Sequence 488331 from Patent EP1572962.
JD139289 - Sequence 120313 from Patent EP1572962.
JD499587 - Sequence 480611 from Patent EP1572962.
JD488991 - Sequence 470015 from Patent EP1572962.
JD499588 - Sequence 480612 from Patent EP1572962.
JD553898 - Sequence 534922 from Patent EP1572962.
JD155499 - Sequence 136523 from Patent EP1572962.
JD189833 - Sequence 170857 from Patent EP1572962.
DQ576498 - Homo sapiens piRNA piR-44610, complete sequence.
JD409325 - Sequence 390349 from Patent EP1572962.
JD374586 - Sequence 355610 from Patent EP1572962.
JD489390 - Sequence 470414 from Patent EP1572962.
JD489391 - Sequence 470415 from Patent EP1572962.
AK025416 - Homo sapiens cDNA: FLJ21763 fis, clone COLF6967.
JD514293 - Sequence 495317 from Patent EP1572962.
JD514292 - Sequence 495316 from Patent EP1572962.
JD514294 - Sequence 495318 from Patent EP1572962.
JD514295 - Sequence 495319 from Patent EP1572962.
JD514296 - Sequence 495320 from Patent EP1572962.
JD345734 - Sequence 326758 from Patent EP1572962.
JD346649 - Sequence 327673 from Patent EP1572962.
JD345733 - Sequence 326757 from Patent EP1572962.
JD225404 - Sequence 206428 from Patent EP1572962.
JD225403 - Sequence 206427 from Patent EP1572962.
JD265835 - Sequence 246859 from Patent EP1572962.
DQ584559 - Homo sapiens piRNA piR-51671, complete sequence.
BC047727 - Homo sapiens, clone IMAGE:6198912, mRNA.
JD413438 - Sequence 394462 from Patent EP1572962.
JD247007 - Sequence 228031 from Patent EP1572962.
MA619174 - JP 2018138019-A/191100: Polycomb-Associated Non-Coding RNAs.
MA552914 - JP 2018138019-A/124840: Polycomb-Associated Non-Coding RNAs.
MA552910 - JP 2018138019-A/124836: Polycomb-Associated Non-Coding RNAs.
MA552909 - JP 2018138019-A/124835: Polycomb-Associated Non-Coding RNAs.
MA552908 - JP 2018138019-A/124834: Polycomb-Associated Non-Coding RNAs.
MA552906 - JP 2018138019-A/124832: Polycomb-Associated Non-Coding RNAs.
MA552902 - JP 2018138019-A/124828: Polycomb-Associated Non-Coding RNAs.
MA552900 - JP 2018138019-A/124826: Polycomb-Associated Non-Coding RNAs.
MA552898 - JP 2018138019-A/124824: Polycomb-Associated Non-Coding RNAs.
MA552897 - JP 2018138019-A/124823: Polycomb-Associated Non-Coding RNAs.
MA552896 - JP 2018138019-A/124822: Polycomb-Associated Non-Coding RNAs.
MA552895 - JP 2018138019-A/124821: Polycomb-Associated Non-Coding RNAs.
MA552894 - JP 2018138019-A/124820: Polycomb-Associated Non-Coding RNAs.
MA552893 - JP 2018138019-A/124819: Polycomb-Associated Non-Coding RNAs.
MA552892 - JP 2018138019-A/124818: Polycomb-Associated Non-Coding RNAs.
MA552890 - JP 2018138019-A/124816: Polycomb-Associated Non-Coding RNAs.
MA552889 - JP 2018138019-A/124815: Polycomb-Associated Non-Coding RNAs.
MA552888 - JP 2018138019-A/124814: Polycomb-Associated Non-Coding RNAs.
MA552883 - JP 2018138019-A/124809: Polycomb-Associated Non-Coding RNAs.
MA552881 - JP 2018138019-A/124807: Polycomb-Associated Non-Coding RNAs.
MA552879 - JP 2018138019-A/124805: Polycomb-Associated Non-Coding RNAs.
MA552877 - JP 2018138019-A/124803: Polycomb-Associated Non-Coding RNAs.
MA552875 - JP 2018138019-A/124801: Polycomb-Associated Non-Coding RNAs.
MA552873 - JP 2018138019-A/124799: Polycomb-Associated Non-Coding RNAs.
MA552872 - JP 2018138019-A/124798: Polycomb-Associated Non-Coding RNAs.
MA552871 - JP 2018138019-A/124797: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9NYU2 (Reactome details) participates in the following event(s):

R-HSA-548884 UGGT1,2 transfers glucose from DbGP to (un)folded protein:(GlcNAc)2 (Man)8b
R-HSA-901032 ER Quality Control Compartment (ERQC)
R-HSA-901042 Calnexin/calreticulin cycle
R-HSA-532668 N-glycan trimming in the ER and Calnexin/Calreticulin cycle
R-HSA-446203 Asparagine N-linked glycosylation
R-HSA-597592 Post-translational protein modification
R-HSA-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000259253.1, ENST00000259253.10, ENST00000259253.2, ENST00000259253.3, ENST00000259253.4, ENST00000259253.5, ENST00000259253.6, ENST00000259253.7, ENST00000259253.8, ENST00000259253.9, GT, NR_027671, Q53QP2, Q53SL3, Q8IW30, Q9H8I4, Q9NYU2, uc317gfy.1, uc317gfy.2, UGCGL1, UGGG1_HUMAN, UGGT, UGT1 , UGTR
UCSC ID: ENST00000259253.11_4
RefSeq Accession: NM_020120.4
Protein: Q9NYU2 (aka UGGG1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.