Human Gene TXK (ENST00000264316.9_8) from GENCODE V47lift37
  Description: TXK tyrosine kinase (from RefSeq NM_003328.3)
Gencode Transcript: ENST00000264316.9_8
Gencode Gene: ENSG00000074966.12_11
Transcript (Including UTRs)
   Position: hg19 chr4:48,068,410-48,136,267 Size: 67,858 Total Exon Count: 15 Strand: -
Coding Region
   Position: hg19 chr4:48,069,654-48,136,187 Size: 66,534 Coding Exon Count: 15 

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Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr4:48,068,410-48,136,267)mRNA (may differ from genome)Protein (527 aa)
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-  Comments and Description Text from UniProtKB
  ID: TXK_HUMAN
DESCRIPTION: RecName: Full=Tyrosine-protein kinase TXK; EC=2.7.10.2; AltName: Full=Protein-tyrosine kinase 4; AltName: Full=Resting lymphocyte kinase;
FUNCTION: Non-receptor tyrosine kinase that plays a redundant role with ITK in regulation of the adaptive immune response. Regulates the development, function and differentiation of conventional T- cells and nonconventional NKT-cells. When antigen presenting cells (APC) activate T-cell receptor (TCR), a series of phosphorylation lead to the recruitment of TXK to the cell membrane, where it is phosphorylated at Tyr-420. Phosphorylation leads to TXK full activation. Contributes also to signaling from many receptors and participates in multiple downstream pathways, including regulation of the actin cytoskekleton. Like ITK, can phosphorylate PLCG1, leading to its localization in lipid rafts and activation, followed by subsequent cleavage of its substrates. In turn, the endoplasmic reticulum releases calcium in the cytoplasm and the nuclear activator of activated T-cells (NFAT) translocates into the nucleus to perform its transcriptional duty. With PARP1 and EEF1A1, TXK forms a complex that acts as a T-helper 1 (Th1) cell- specific transcription factor and binds the promoter of IFNG to directly regulate its transcription, and is thus involved importantly in Th1 cytokine production. Phosphorylates both PARP1 and EEF1A1. Phosphorylates also key sites in LCP2 leading to the up-regulation of Th1 preferred cytokine IL-2. Phosphorylates 'Tyr- 201' of CTLA4 which leads to the association of PI-3 kinase with the CTLA4 receptor.
CATALYTIC ACTIVITY: ATP + a [protein]-L-tyrosine = ADP + a [protein]-L-tyrosine phosphate.
ENZYME REGULATION: Activated by phosphorylation by FYN.
SUBUNIT: Interacts with PARP1 and EEF1A1. Interacts with SH2D2A (By similarity).
SUBCELLULAR LOCATION: Cytoplasm. Nucleus. Cell membrane; Peripheral membrane protein. Note=Localizes in the vicinity of cell surface receptors in the plasma membrane after receptor stimulation. Translocates into the nucleus and enhances IFN-gamma gene transcription in T-cells.
TISSUE SPECIFICITY: Expressed in T-cells and some myeloid cell lines. Expressed in Th1/Th0 cells with IFN-gamma-producing potential.
PTM: Phosphorylated at Tyr-420 by FYN. Autophosphorylation at Tyr- 91 is critical for the activation of TXK, leading to the up- regulation of IFN-gamma gene transcription.
PTM: The cysteine string at the N-terminus is palmitoylated and required for the proper subcellular location (By similarity).
SIMILARITY: Belongs to the protein kinase superfamily. Tyr protein kinase family. TEC subfamily.
SIMILARITY: Contains 1 protein kinase domain.
SIMILARITY: Contains 1 SH2 domain.
SIMILARITY: Contains 1 SH3 domain.
CAUTION: Unlike the other TEC subfamily members, TXK is activated independently of the activity of phosphatidylinositol 3-kinase, consistent with its lack of a PH domain. Membrane association is performed through palmitoylation at the N-terminus.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: TXK
Diseases sorted by gene-association score: behcet syndrome (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 5.32 RPKM in Spleen
Total median expression: 26.44 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -17.9080-0.224 Picture PostScript Text
3' UTR -305.801244-0.246 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011009 - Kinase-like_dom
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR001245 - Ser-Thr/Tyr_kinase_cat_dom
IPR000980 - SH2
IPR001452 - SH3_domain
IPR008266 - Tyr_kinase_AS
IPR020635 - Tyr_kinase_cat_dom

Pfam Domains:
PF00017 - SH2 domain
PF00018 - SH3 domain
PF00069 - Protein kinase domain
PF07714 - Protein tyrosine and serine/threonine kinase
PF14604 - Variant SH3 domain

SCOP Domains:
50044 - SH3-domain
56112 - Protein kinase-like (PK-like)
55550 - SH2 domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2DM0 - NMR MuPIT


ModBase Predicted Comparative 3D Structure on P42681
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001012 RNA polymerase II regulatory region DNA binding
GO:0001077 transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677 DNA binding
GO:0004672 protein kinase activity
GO:0004713 protein tyrosine kinase activity
GO:0004715 non-membrane spanning protein tyrosine kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0005102 receptor binding

Biological Process:
GO:0001816 cytokine production
GO:0002250 adaptive immune response
GO:0002376 immune system process
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006357 regulation of transcription from RNA polymerase II promoter
GO:0006366 transcription from RNA polymerase II promoter
GO:0006468 protein phosphorylation
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007202 activation of phospholipase C activity
GO:0007229 integrin-mediated signaling pathway
GO:0010543 regulation of platelet activation
GO:0016310 phosphorylation
GO:0030154 cell differentiation
GO:0032729 positive regulation of interferon-gamma production
GO:0038083 peptidyl-tyrosine autophosphorylation
GO:0042127 regulation of cell proliferation
GO:0042246 tissue regeneration
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0046777 protein autophosphorylation
GO:0050852 T cell receptor signaling pathway
GO:0060335 positive regulation of interferon-gamma-mediated signaling pathway

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0031234 extrinsic component of cytoplasmic side of plasma membrane


-  Descriptions from all associated GenBank mRNAs
  L27071 - Human tyrosine kinase (TXK) mRNA, complete cds.
BC166632 - Synthetic construct Homo sapiens clone IMAGE:100066358, MGC:195495 TXK tyrosine kinase (TXK) mRNA, encodes complete protein.
BC017829 - Homo sapiens TXK tyrosine kinase, mRNA (cDNA clone IMAGE:4617083), **** WARNING: chimeric clone ****.
AK307055 - Homo sapiens cDNA, FLJ97003.
JD166776 - Sequence 147800 from Patent EP1572962.
JD556910 - Sequence 537934 from Patent EP1572962.
JD092605 - Sequence 73629 from Patent EP1572962.
JD184045 - Sequence 165069 from Patent EP1572962.
JD126029 - Sequence 107053 from Patent EP1572962.
AK300141 - Homo sapiens cDNA FLJ59978 complete cds, highly similar to Tyrosine-protein kinase TXK (EC 2.7.10.2).
JD199257 - Sequence 180281 from Patent EP1572962.
JD117992 - Sequence 99016 from Patent EP1572962.
JD088610 - Sequence 69634 from Patent EP1572962.
JD163173 - Sequence 144197 from Patent EP1572962.
JD080635 - Sequence 61659 from Patent EP1572962.
JD097010 - Sequence 78034 from Patent EP1572962.
JD086968 - Sequence 67992 from Patent EP1572962.
JD039876 - Sequence 20900 from Patent EP1572962.
JD064723 - Sequence 45747 from Patent EP1572962.
JD056161 - Sequence 37185 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P42681 (Reactome details) participates in the following event(s):

R-HSA-2730885 Recruitment of TEC kinases to p-SLP-76
R-HSA-2730833 Phosphorylation of TEC kinases by p-SYK
R-HSA-2730858 Autophosphorylation of BTK/ITK
R-HSA-2730888 Phosphorylation of PLC-gamma
R-HSA-2730847 Hydrolysis of PIP2 by PLCG
R-HSA-2871809 FCERI mediated Ca+2 mobilization
R-HSA-2454202 Fc epsilon receptor (FCERI) signaling
R-HSA-168249 Innate Immune System
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000264316.1, ENST00000264316.2, ENST00000264316.3, ENST00000264316.4, ENST00000264316.5, ENST00000264316.6, ENST00000264316.7, ENST00000264316.8, NM_003328, P42681, PTK4, Q14220, RLK, TXK_HUMAN, uc317hrg.1, uc317hrg.2
UCSC ID: ENST00000264316.9_8
RefSeq Accession: NM_003328.3
Protein: P42681 (aka TXK_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.