Human Gene TRIAP1 (ENST00000546954.2_7) from GENCODE V47lift37
  Description: TP53 regulated inhibitor of apoptosis 1 (from RefSeq NM_016399.3)
Gencode Transcript: ENST00000546954.2_7
Gencode Gene: ENSG00000170855.4_9
Transcript (Including UTRs)
   Position: hg19 chr12:120,881,767-120,884,187 Size: 2,421 Total Exon Count: 2 Strand: -
Coding Region
   Position: hg19 chr12:120,882,675-120,884,175 Size: 1,501 Coding Exon Count: 2 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:120,881,767-120,884,187)mRNA (may differ from genome)Protein (76 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: TRIA1_HUMAN
DESCRIPTION: RecName: Full=TP53-regulated inhibitor of apoptosis 1; AltName: Full=Protein 15E1.1; AltName: Full=WF-1; AltName: Full=p53-inducible cell-survival factor; Short=p53CSV;
FUNCTION: Mediates cell survival by inhibiting activation of caspase-9 which prevents induction of apoptosis.
SUBUNIT: Interacts with APAF1 and HSP70.
SUBCELLULAR LOCATION: Cytoplasm, perinuclear region.
INDUCTION: In p53/TP53-dependent manner in response to low levels of DNA damage. Not induced when DNA damage is severe.
SIMILARITY: Belongs to the TRIAP1/MDM35 family.
SEQUENCE CAUTION: Sequence=AAR00584.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: TRIAP1
Diseases sorted by gene-association score: hypersensitivity reaction disease (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 29.62 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 513.01 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
3' UTR -240.30908-0.265 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR007918 - MDM35_apoptosis

Pfam Domains:
PF05254 - Uncharacterised protein family (UPF0203)

SCOP Domains:
47072 - Cysteine alpha-hairpin motif
81531 - Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)

ModBase Predicted Comparative 3D Structure on O43715
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologGenome Browser
Gene Details  Gene Details Gene Details
Gene Sorter  Gene Sorter Gene Sorter
  Ensembl  SGD
     Protein Sequence
     Alignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0002039 p53 binding
GO:0005515 protein binding
GO:1990050 phosphatidic acid transporter activity

Biological Process:
GO:0006869 lipid transport
GO:0006915 apoptotic process
GO:0006977 DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0015914 phospholipid transport
GO:0030330 DNA damage response, signal transduction by p53 class mediator
GO:0034644 cellular response to UV
GO:0042981 regulation of apoptotic process
GO:0043066 negative regulation of apoptotic process
GO:0043154 negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0090201 negative regulation of release of cytochrome c from mitochondria
GO:0097035 regulation of membrane lipid distribution
GO:1902166 negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
GO:2001140 positive regulation of phospholipid transport

Cellular Component:
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005739 mitochondrion
GO:0005758 mitochondrial intermembrane space
GO:0032991 macromolecular complex
GO:0048471 perinuclear region of cytoplasm


-  Descriptions from all associated GenBank mRNAs
  LF206930 - JP 2014500723-A/14433: Polycomb-Associated Non-Coding RNAs.
U75688 - Homo sapiens WF-1 mRNA, complete cds.
AF161481 - Homo sapiens HSPC132 mRNA, complete cds.
BC002638 - Homo sapiens TP53 regulated inhibitor of apoptosis 1, mRNA (cDNA clone MGC:3365 IMAGE:3608062), complete cds.
BC055313 - Homo sapiens TP53 regulated inhibitor of apoptosis 1, mRNA (cDNA clone MGC:62047 IMAGE:4280046), complete cds.
LF359468 - JP 2014500723-A/166971: Polycomb-Associated Non-Coding RNAs.
JD293890 - Sequence 274914 from Patent EP1572962.
JD271809 - Sequence 252833 from Patent EP1572962.
JD381350 - Sequence 362374 from Patent EP1572962.
LF359467 - JP 2014500723-A/166970: Polycomb-Associated Non-Coding RNAs.
JD284611 - Sequence 265635 from Patent EP1572962.
JD287129 - Sequence 268153 from Patent EP1572962.
JD445017 - Sequence 426041 from Patent EP1572962.
JD068106 - Sequence 49130 from Patent EP1572962.
JD545603 - Sequence 526627 from Patent EP1572962.
JD254247 - Sequence 235271 from Patent EP1572962.
JD184433 - Sequence 165457 from Patent EP1572962.
JD298054 - Sequence 279078 from Patent EP1572962.
AK312006 - Homo sapiens cDNA, FLJ92280.
KJ893922 - Synthetic construct Homo sapiens clone ccsbBroadEn_03316 TRIAP1 gene, encodes complete protein.
DQ893091 - Synthetic construct clone IMAGE:100005721; FLH193654.01X; RZPDo839A0879D TP53 regulated inhibitor of apoptosis 1 (TRIAP1) gene, encodes complete protein.
DQ896363 - Synthetic construct Homo sapiens clone IMAGE:100010823; FLH193650.01L; RZPDo839A0869D TP53 regulated inhibitor of apoptosis 1 (TRIAP1) gene, encodes complete protein.
DL492561 - Novel nucleic acids.
MA442507 - JP 2018138019-A/14433: Polycomb-Associated Non-Coding RNAs.
MA595045 - JP 2018138019-A/166971: Polycomb-Associated Non-Coding RNAs.
MA595044 - JP 2018138019-A/166970: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein O43715 (Reactome details) participates in the following event(s):

R-HSA-6801242 TRIAP1 binds PRELID1, PRELID3A
R-HSA-6801250 TRIAP1:PRELID1, PRELID3A transports PA from the outer to the inner mitochondrial membrane
R-HSA-6803204 TP53 Regulates Transcription of Genes Involved in Cytochrome C Release
R-HSA-5633008 TP53 Regulates Transcription of Cell Death Genes
R-HSA-3700989 Transcriptional Regulation by TP53
R-HSA-212436 Generic Transcription Pathway
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: 15E1.1, B2R4Z7, ENST00000546954.1, HSPC132, NM_016399, O43715, Q5RKS5, Q6LCA7, TRIA1_HUMAN, uc324xwb.1, uc324xwb.2
UCSC ID: ENST00000546954.2_7
RefSeq Accession: NM_016399.3
Protein: O43715 (aka TRIA1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.