Human Gene TPX2 (ENST00000300403.11_6) from GENCODE V47lift37
  Description: TPX2 microtubule nucleation factor (from RefSeq NM_012112.5)
Gencode Transcript: ENST00000300403.11_6
Gencode Gene: ENSG00000088325.16_9
Transcript (Including UTRs)
   Position: hg19 chr20:30,327,093-30,389,603 Size: 62,511 Total Exon Count: 18 Strand: +
Coding Region
   Position: hg19 chr20:30,345,280-30,388,883 Size: 43,604 Coding Exon Count: 16 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr20:30,327,093-30,389,603)mRNA (may differ from genome)Protein (747 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MalacardsMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: TPX2_HUMAN
DESCRIPTION: RecName: Full=Targeting protein for Xklp2; AltName: Full=Differentially expressed in cancerous and non-cancerous lung cells 2; Short=DIL-2; AltName: Full=Hepatocellular carcinoma-associated antigen 519; AltName: Full=Protein fls353; AltName: Full=Restricted expression proliferation-associated protein 100; Short=p100;
FUNCTION: Spindle assembly factor. Required for normal assembly of mitotic spindles. Required for normal assembly of microtubules during apoptosis. Required for chromatin and/or kinetochore dependent microtubule nucleation. Mediates AURKA localization to spindle microtubules. Activates AURKA by promoting its autophosphorylation at 'Thr-288' and protects this residue against dephosphorylation.
SUBUNIT: Interacts with AURKA.
INTERACTION: P62993:GRB2; NbExp=2; IntAct=EBI-1037322, EBI-401755; P16333:NCK1; NbExp=4; IntAct=EBI-1037322, EBI-389883; P27986:PIK3R1; NbExp=2; IntAct=EBI-1037322, EBI-79464;
SUBCELLULAR LOCATION: Nucleus. Cytoplasm, cytoskeleton, spindle. Cytoplasm, cytoskeleton, spindle pole. Note=During mitosis it is strictly associated with the spindle pole and with the mitotic spindle, whereas during S and G2, it is diffusely distributed throughout the nucleus. Is released from the nucleus in apoptotic cells and is detected on apoptotic microtubules.
TISSUE SPECIFICITY: Expressed in lung carcinoma cell lines but not in normal lung tissues.
DEVELOPMENTAL STAGE: Exclusively expressed in proliferating cells from the transition G1/S until the end of cytokinesis.
PTM: Phosphorylated upon DNA damage, probably by ATM or ATR.
SIMILARITY: Belongs to the TPX2 family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: TPX2
Diseases sorted by gene-association score: hepatocellular carcinoma (3)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 46.12 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 128.94 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -199.90509-0.393 Picture PostScript Text
3' UTR -206.60720-0.287 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR015128 - Aurora-A-bd
IPR022021 - TPX2_importin
IPR009675 - Xklp2_targeting_prot

Pfam Domains:
PF06886 - Targeting protein for Xklp2 (TPX2) domain
PF09041 - Aurora-A binding
PF12214 - Cell cycle regulated microtubule associated protein

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1OL5 - X-ray MuPIT 3E5A - X-ray MuPIT 3HA6 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q9ULW0
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0005525 GTP binding
GO:0019901 protein kinase binding
GO:0061676 importin-alpha family protein binding

Biological Process:
GO:0000278 mitotic cell cycle
GO:0006915 apoptotic process
GO:0007049 cell cycle
GO:0008283 cell proliferation
GO:0010389 regulation of G2/M transition of mitotic cell cycle
GO:0032147 activation of protein kinase activity
GO:0051301 cell division
GO:0060236 regulation of mitotic spindle organization
GO:0090307 mitotic spindle assembly
GO:1901796 regulation of signal transduction by p53 class mediator

Cellular Component:
GO:0000922 spindle pole
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005815 microtubule organizing center
GO:0005819 spindle
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0005874 microtubule
GO:0015630 microtubule cytoskeleton
GO:0043203 axon hillock
GO:0045171 intercellular bridge
GO:0072686 mitotic spindle


-  Descriptions from all associated GenBank mRNAs
  JF432351 - Synthetic construct Homo sapiens clone IMAGE:100073542 TPX2, microtubule-associated, homolog (Xenopus laevis) (TPX2) gene, encodes complete protein.
KJ893317 - Synthetic construct Homo sapiens clone ccsbBroadEn_02711 TPX2 gene, encodes complete protein.
JD023057 - Sequence 4081 from Patent EP1572962.
AK312549 - Homo sapiens cDNA, FLJ92922.
AF098158 - Homo sapiens restricted expressed proliferation associated protein 100 mRNA, complete cds.
AB024704 - Homo sapiens mRNA for fls353, complete cds.
AF287265 - Homo sapiens hepatocellular carcinoma-associated antigen 90 (HCA90) mRNA, complete cds.
JD029087 - Sequence 10111 from Patent EP1572962.
BC020207 - Homo sapiens TPX2, microtubule-associated, homolog (Xenopus laevis), mRNA (cDNA clone MGC:31820 IMAGE:5015279), complete cds.
JD443564 - Sequence 424588 from Patent EP1572962.
BC004136 - Homo sapiens TPX2, microtubule-associated, homolog (Xenopus laevis), mRNA (cDNA clone MGC:1537 IMAGE:3509275), complete cds.
JD141829 - Sequence 122853 from Patent EP1572962.
JD146189 - Sequence 127213 from Patent EP1572962.
JD559065 - Sequence 540089 from Patent EP1572962.
AB027467 - Homo sapiens C20orf2 mRNA, complete cds.
AF146731 - Homo sapiens hepatocellular carcinoma antigen 519 (HCA519) mRNA, complete cds.
JD423821 - Sequence 404845 from Patent EP1572962.
JD498949 - Sequence 479973 from Patent EP1572962.
CU678584 - Synthetic construct Homo sapiens gateway clone IMAGE:100020579 5' read TPX2 mRNA.
AY734680 - Homo sapiens HCTP4 (HCTP4) mRNA, complete cds.
AL117534 - Homo sapiens mRNA; cDNA DKFZp434F192 (from clone DKFZp434F192).
AF244547 - Homo sapiens targeting protein for Xklp2 (TPX2) mRNA, partial cds.
AK001391 - Homo sapiens cDNA FLJ10529 fis, clone NT2RP2000965, highly similar to Targeting protein for Xklp2.
AK093379 - Homo sapiens cDNA FLJ36060 fis, clone TESTI2018521, moderately similar to Targeting protein for Xklp2; TPX2.
BC011357 - Homo sapiens TPX2, microtubule-associated, homolog (Xenopus laevis), mRNA (cDNA clone IMAGE:4179581), partial cds.
JD172623 - Sequence 153647 from Patent EP1572962.
JD149929 - Sequence 130953 from Patent EP1572962.
JD093510 - Sequence 74534 from Patent EP1572962.
JD331658 - Sequence 312682 from Patent EP1572962.
JD444969 - Sequence 425993 from Patent EP1572962.
JD186889 - Sequence 167913 from Patent EP1572962.
JD562841 - Sequence 543865 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_ranMSpathway - Role of Ran in mitotic spindle regulation

Reactome (by CSHL, EBI, and GO)

Protein Q9ULW0 (Reactome details) participates in the following event(s):

R-HSA-8853405 TPX2 binds AURKA at centrosomes
R-HSA-8853419 TPX2 promotes AURKA autophosphorylation
R-HSA-6805103 AURKA phosphorylates TP53
R-HSA-8854518 AURKA Activation by TPX2
R-HSA-69275 G2/M Transition
R-HSA-6804756 Regulation of TP53 Activity through Phosphorylation
R-HSA-453274 Mitotic G2-G2/M phases
R-HSA-5633007 Regulation of TP53 Activity
R-HSA-69278 Cell Cycle (Mitotic)
R-HSA-3700989 Transcriptional Regulation by TP53
R-HSA-1640170 Cell Cycle
R-HSA-212436 Generic Transcription Pathway
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: C20orf1, C20orf2, DIL2, ENST00000300403.1, ENST00000300403.10, ENST00000300403.2, ENST00000300403.3, ENST00000300403.4, ENST00000300403.5, ENST00000300403.6, ENST00000300403.7, ENST00000300403.8, ENST00000300403.9, HCA519, NM_012112, Q96RR5, Q9H1R4, Q9NRA3, Q9UFN9, Q9UL00, Q9ULW0, Q9Y2M1, TPX2_HUMAN, uc317mpe.1, uc317mpe.2
UCSC ID: ENST00000300403.11_6
RefSeq Accession: NM_012112.5
Protein: Q9ULW0 (aka TPX2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.