Human Gene TNKS2 (ENST00000371627.5_4) from GENCODE V47lift37
  Description: tankyrase 2 (from RefSeq NM_025235.4)
Gencode Transcript: ENST00000371627.5_4
Gencode Gene: ENSG00000107854.7_8
Transcript (Including UTRs)
   Position: hg19 chr10:93,558,183-93,625,232 Size: 67,050 Total Exon Count: 27 Strand: +
Coding Region
   Position: hg19 chr10:93,558,448-93,622,756 Size: 64,309 Coding Exon Count: 27 

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RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:93,558,183-93,625,232)mRNA (may differ from genome)Protein (1166 aa)
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-  Comments and Description Text from UniProtKB
  ID: TNKS2_HUMAN
DESCRIPTION: RecName: Full=Tankyrase-2; Short=TANK2; EC=2.4.2.30; AltName: Full=ADP-ribosyltransferase diphtheria toxin-like 6; Short=ARTD6; AltName: Full=Poly [ADP-ribose] polymerase 5B; AltName: Full=TNKS-2; AltName: Full=TRF1-interacting ankyrin-related ADP-ribose polymerase 2; AltName: Full=Tankyrase II; AltName: Full=Tankyrase-like protein; AltName: Full=Tankyrase-related protein;
FUNCTION: Poly-ADP-ribosyltransferase involved in various processes such as Wnt signaling pathway, telomere length and vesicle trafficking. Acts as an activator of the Wnt signaling pathway by mediating poly-ADP-ribosylation of AXIN1 and AXIN2, 2 key components of the beta-catenin destruction complex: poly-ADP- ribosylated target proteins are recognized by RNF146, which mediates their ubiquitination and subsequent degradation. Also mediates poly-ADP-ribosylation of BLZF1 and CASC3, followed by recruitment of RNF146 and subsequent ubiquitination. Mediates poly-ADP-ribosylation of TERF1, thereby contributing to the regulation of telomere length. May also regulate vesicle trafficking and modulate the subcellular distribution of SLC2A4/GLUT4-vesicles.
CATALYTIC ACTIVITY: NAD(+) + (ADP-D-ribosyl)(n)-acceptor = nicotinamide + (ADP-D-ribosyl)(n+1)-acceptor.
ENZYME REGULATION: Specifically inhibited by XAV939, a small molecule, leading to inhibit the Wnt signaling pathway by stabilizing AXIN1 and AXIN2.
SUBUNIT: Oligomerizes and associates with TNKS. Interacts with the cytoplasmic domain of LNPEP/Otase in SLC2A4/GLUT4-vesicles. Binds to the N-terminus of Grb14 and TRF1 with its ankyrin repeat region. Interacts with HIF1AN. Interacts with RNF146; this interaction leads to ubiquitination and proteasomal degradation.
INTERACTION: O15084:ANKRD28; NbExp=3; IntAct=EBI-4398527, EBI-359567; O15169:AXIN1; NbExp=2; IntAct=EBI-4398527, EBI-710484; Q9NWV8:BABAM1; NbExp=4; IntAct=EBI-4398527, EBI-745725; P11274:BCR; NbExp=3; IntAct=EBI-4398527, EBI-712838; Q6V0I7:FAT4; NbExp=2; IntAct=EBI-4398527, EBI-948985; Q92698:RAD54L; NbExp=3; IntAct=EBI-4398527, EBI-5333483; P78314:SH3BP2; NbExp=5; IntAct=EBI-4398527, EBI-727062; Q06649:Sh3bp2 (xeno); NbExp=6; IntAct=EBI-4398527, EBI-5323518; O43815:STRN; NbExp=2; IntAct=EBI-4398527, EBI-1046642; P54274:TERF1; NbExp=2; IntAct=EBI-4398527, EBI-710997;
SUBCELLULAR LOCATION: Cytoplasm. Golgi apparatus membrane; Peripheral membrane protein. Nucleus. Chromosome, telomere (Potential). Note=Associated with the Golgi and with juxtanuclear SLC2A4/GLUT4-vesicles. Also found around the pericentriolar matrix of mitotic centromeres. During interphase, a small fraction of TNKS2 is found in the nucleus, associated with TRF1.
TISSUE SPECIFICITY: Highly expressed in placenta, skeletal muscle, liver, brain, kidney, heart, thymus, spinal cord, lung, peripheral blood leukocytes, pancreas, lymph nodes, spleen, prostate, testis, ovary, small intestine, colon, mammary gland, breast and breast carcinoma, and in common-type meningioma. Highly expressed in fetal liver, heart and brain.
PTM: Ubiquitinated at 'Lys-48' and 'Lys-63' by RNF146 when auto- poly-ADP-ribosylated; this leads to degradation.
PTM: ADP-ribosylated (-auto). Poly-ADP-ribosylated protein is recognized by RNF146, followed by ubiquitination.
PTM: The crystallographic evidence suggests that the 3- hydroxyhistidine may be the (3S) stereoisomer.
SIMILARITY: Contains 15 ANK repeats.
SIMILARITY: Contains 1 PARP catalytic domain.
SIMILARITY: Contains 1 SAM (sterile alpha motif) domain.
SEQUENCE CAUTION: Sequence=AAG25674.1; Type=Erroneous initiation; Note=Translation N-terminally shortened; Sequence=BAB14665.1; Type=Erroneous initiation; Note=Translation N-terminally extended;

-  Primer design for this transcript
 

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-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 18.61 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 621.79 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -157.90265-0.596 Picture PostScript Text
3' UTR -583.102476-0.236 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002110 - Ankyrin_rpt
IPR020683 - Ankyrin_rpt-contain_dom
IPR012317 - Poly(ADP-ribose)pol_cat_dom
IPR001660 - SAM
IPR013761 - SAM/pointed
IPR011510 - SAM_2

Pfam Domains:
PF00023 - Ankyrin repeat
PF00536 - SAM domain (Sterile alpha motif)
PF00644 - Poly(ADP-ribose) polymerase catalytic domain
PF07647 - SAM domain (Sterile alpha motif)
PF12796 - Ankyrin repeats (3 copies)
PF13606 - Ankyrin repeat
PF13637 - Ankyrin repeats (many copies)
PF13857 - Ankyrin repeats (many copies)

SCOP Domains:
140860 - Pseudo ankyrin repeat-like
47769 - SAM/Pointed domain
51735 - NAD(P)-binding Rossmann-fold domains
51984 - MurCD N-terminal domain
56399 - ADP-ribosylation
54427 - NTF2-like
48403 - Ankyrin repeat

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2Y0I - X-ray MuPIT 3KR7 - X-ray MuPIT 3KR8 - X-ray MuPIT 3MHJ - X-ray MuPIT 3MHK - X-ray MuPIT 3P0N - X-ray MuPIT 3P0P - X-ray MuPIT 3P0Q - X-ray MuPIT 3TWQ - X-ray MuPIT 3TWR - X-ray MuPIT 3TWS - X-ray MuPIT 3TWT - X-ray MuPIT 3TWU - X-ray MuPIT 3TWV - X-ray MuPIT 3TWW - X-ray MuPIT 3TWX - X-ray MuPIT 3U9H - X-ray MuPIT 3U9Y - X-ray MuPIT 3UA9 - X-ray MuPIT 4AVU - X-ray MuPIT 4AVW - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q9H2K2
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003950 NAD+ ADP-ribosyltransferase activity
GO:0005515 protein binding
GO:0016740 transferase activity
GO:0016757 transferase activity, transferring glycosyl groups
GO:0019899 enzyme binding
GO:0046872 metal ion binding

Biological Process:
GO:0000209 protein polyubiquitination
GO:0006471 protein ADP-ribosylation
GO:0016055 Wnt signaling pathway
GO:0032212 positive regulation of telomere maintenance via telomerase
GO:0035264 multicellular organism growth
GO:0040014 regulation of multicellular organism growth
GO:0070198 protein localization to chromosome, telomeric region
GO:0070213 protein auto-ADP-ribosylation
GO:0090263 positive regulation of canonical Wnt signaling pathway
GO:1904355 positive regulation of telomere capping
GO:1904357 negative regulation of telomere maintenance via telomere lengthening

Cellular Component:
GO:0000139 Golgi membrane
GO:0000242 pericentriolar material
GO:0000781 chromosome, telomeric region
GO:0000784 nuclear chromosome, telomeric region
GO:0005634 nucleus
GO:0005635 nuclear envelope
GO:0005694 chromosome
GO:0005737 cytoplasm
GO:0005794 Golgi apparatus
GO:0005829 cytosol
GO:0016020 membrane
GO:0048471 perinuclear region of cytoplasm


-  Descriptions from all associated GenBank mRNAs
  AF438201 - Homo sapiens tankyrase II mRNA, complete cds.
AF305081 - Homo sapiens tankyrase-related protein mRNA, partial cds.
AK314612 - Homo sapiens cDNA, FLJ95451, highly similar to Homo sapiens tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2 (TNKS2), mRNA.
AF309033 - Homo sapiens tankyrase-2 (TNKS-2) mRNA, complete cds.
AF329696 - Homo sapiens tankyrase 2 mRNA, complete cds.
BC148498 - Synthetic construct Homo sapiens clone IMAGE:100015528, MGC:183079 tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2 (TNKS2) mRNA, encodes complete protein.
BC156931 - Synthetic construct Homo sapiens clone IMAGE:100063626, MGC:190802 tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2 (TNKS2) mRNA, encodes complete protein.
AF342982 - Homo sapiens tankyrase 2 mRNA, complete cds.
AF264912 - Homo sapiens tankyrase-like protein (TNKL) mRNA, complete cds.
JD355856 - Sequence 336880 from Patent EP1572962.
AL833676 - Homo sapiens mRNA; cDNA DKFZp667A1222 (from clone DKFZp667A1222).
BC023218 - Homo sapiens, clone IMAGE:4933444, mRNA.
AK023746 - Homo sapiens cDNA FLJ13684 fis, clone PLACE2000021, moderately similar to Homo sapiens TRF1-interacting ankyrin-related ADP-ribose polymerase mRNA.
JD154846 - Sequence 135870 from Patent EP1572962.
JD098551 - Sequence 79575 from Patent EP1572962.
JD516903 - Sequence 497927 from Patent EP1572962.
JD561900 - Sequence 542924 from Patent EP1572962.
JD267219 - Sequence 248243 from Patent EP1572962.
JD130026 - Sequence 111050 from Patent EP1572962.
JD146659 - Sequence 127683 from Patent EP1572962.
JD171990 - Sequence 153014 from Patent EP1572962.
JD277698 - Sequence 258722 from Patent EP1572962.
JD200964 - Sequence 181988 from Patent EP1572962.
JD161238 - Sequence 142262 from Patent EP1572962.
JD227477 - Sequence 208501 from Patent EP1572962.
JD058506 - Sequence 39530 from Patent EP1572962.
JD538660 - Sequence 519684 from Patent EP1572962.
JD127436 - Sequence 108460 from Patent EP1572962.
JD561664 - Sequence 542688 from Patent EP1572962.
JD563852 - Sequence 544876 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9H2K2 (Reactome details) participates in the following event(s):

R-HSA-3640862 Tankyrase binds AXIN
R-HSA-5262606 XAV939 binds tankyrase to stabilize axin and inhibit WNT signaling
R-HSA-3640858 Tankyrase ADP-ribosylates AXIN
R-HSA-3640872 USP34 deubiquitinates AXIN1,AXIN2
R-HSA-3640861 RNF146 ubiquitinates ADP-ribosylated AXIN
R-HSA-3640844 RNF146 binds RibC-AXIN:TNKS complex
R-HSA-8948800 TNKS and TNKS2 PARylate PTEN
R-HSA-4641257 Degradation of AXIN
R-HSA-5545619 XAV939 inhibits tankyrase, stabilizing AXIN
R-HSA-201681 TCF dependent signaling in response to WNT
R-HSA-5689880 Ub-specific processing proteases
R-HSA-4791275 Signaling by WNT in cancer
R-HSA-8948751 Regulation of PTEN stability and activity
R-HSA-195721 Signaling by WNT
R-HSA-5688426 Deubiquitination
R-HSA-5663202 Diseases of signal transduction
R-HSA-6807070 PTEN Regulation
R-HSA-162582 Signal Transduction
R-HSA-597592 Post-translational protein modification
R-HSA-1643685 Disease
R-HSA-1257604 PIP3 activates AKT signaling
R-HSA-392499 Metabolism of proteins
R-HSA-9006925 Intracellular signaling by second messengers

-  Other Names for This Gene
  Alternate Gene Symbols: B2RBD3, ENST00000371627.1, ENST00000371627.2, ENST00000371627.3, ENST00000371627.4, NM_025235, PARP5B , Q9H2K2, Q9H8F2, Q9HAS4, TANK2, TNKL, TNKS2 , TNKS2_HUMAN, uc318jha.1, uc318jha.2
UCSC ID: ENST00000371627.5_4
RefSeq Accession: NM_025235.4
Protein: Q9H2K2 (aka TNKS2_HUMAN or TNK2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.