Human Gene TMEM205 (ENST00000354882.10_8) from GENCODE V47lift37
  Description: transmembrane protein 205, transcript variant 1 (from RefSeq NM_198536.3)
Gencode Transcript: ENST00000354882.10_8
Gencode Gene: ENSG00000105518.14_16
Transcript (Including UTRs)
   Position: hg19 chr19:11,453,454-11,456,944 Size: 3,491 Total Exon Count: 3 Strand: -
Coding Region
   Position: hg19 chr19:11,453,491-11,456,295 Size: 2,805 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:11,453,454-11,456,944)mRNA (may differ from genome)Protein (189 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: TM205_HUMAN
DESCRIPTION: RecName: Full=Transmembrane protein 205;
FUNCTION: In cancer cells, plays a role in resistance to the chemotherapeutic agent cisplatin.
SUBCELLULAR LOCATION: Membrane; Multi-pass membrane protein. Note=Located on cell surface microvilli. In cancer cells, transition in subcellular location from cell surface to intracellular regions correlates the progression of cisplatin resistance.
TISSUE SPECIFICITY: Widely expressed with highest levels in pancreas, followed by adrenal gland, thyroid, liver, mammary gland, prostate, kidney, and retina; lowest levels in skeletal muscle. Overexpressed in cisplatin-resistant cancer cells (at protein level).
SIMILARITY: Belongs to the TMEM205 family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 104.30 RPKM in Adrenal Gland
Total median expression: 2556.80 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -267.20649-0.412 Picture PostScript Text
3' UTR -4.2037-0.114 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR025423 - DUF4149

Pfam Domains:
PF13664 - Domain of unknown function (DUF4149)

ModBase Predicted Comparative 3D Structure on Q6UW68
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Cellular Component:
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  BC091472 - Homo sapiens transmembrane protein 205, mRNA (cDNA clone MGC:110858 IMAGE:30335220), complete cds.
AY358949 - Homo sapiens clone DNA56107 MBC3205 (UNQ501) mRNA, complete cds.
BC008365 - Homo sapiens hypothetical protein MGC3205, mRNA (cDNA clone IMAGE:3358066), with apparent retained intron.
BC071616 - Homo sapiens transmembrane protein 205, mRNA (cDNA clone IMAGE:5197410), with apparent retained intron.
AK291979 - Homo sapiens cDNA FLJ77351 complete cds, highly similar to Homo sapiens MBC3205 (UNQ501), mRNA.
AK127147 - Homo sapiens cDNA FLJ45204 fis, clone BRCAN2009168.
JD356003 - Sequence 337027 from Patent EP1572962.
BC064948 - Homo sapiens transmembrane protein 205, mRNA (cDNA clone MGC:70339 IMAGE:6025162), complete cds.
JD168059 - Sequence 149083 from Patent EP1572962.
HQ448125 - Synthetic construct Homo sapiens clone IMAGE:100071508; CCSB012295_01 MBC3205 (TMEM205) gene, encodes complete protein.
KJ896146 - Synthetic construct Homo sapiens clone ccsbBroadEn_05540 TMEM205 gene, encodes complete protein.
CU687978 - Synthetic construct Homo sapiens gateway clone IMAGE:100021576 5' read UNQ501 mRNA.
DQ582961 - Homo sapiens piRNA piR-50073, complete sequence.
JD204071 - Sequence 185095 from Patent EP1572962.
DQ576640 - Homo sapiens piRNA piR-44752, complete sequence.
JD022972 - Sequence 3996 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000354882.1, ENST00000354882.2, ENST00000354882.3, ENST00000354882.4, ENST00000354882.5, ENST00000354882.6, ENST00000354882.7, ENST00000354882.8, ENST00000354882.9, NM_198536, Q6UW68, TM205_HUMAN, uc317yvh.1, uc317yvh.2, UNQ501/PRO1018
UCSC ID: ENST00000354882.10_8
RefSeq Accession: NM_198536.3
Protein: Q6UW68 (aka TM205_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.