Human Gene TCTN3 (ENST00000371217.10_10) from GENCODE V47lift37
  Description: tectonic family member 3, transcript variant 1 (from RefSeq NM_015631.6)
Gencode Transcript: ENST00000371217.10_10
Gencode Gene: ENSG00000119977.22_18
Transcript (Including UTRs)
   Position: hg19 chr10:97,423,158-97,453,684 Size: 30,527 Total Exon Count: 14 Strand: -
Coding Region
   Position: hg19 chr10:97,423,824-97,453,656 Size: 29,833 Coding Exon Count: 14 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:97,423,158-97,453,684)mRNA (may differ from genome)Protein (607 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: TECT3_HUMAN
DESCRIPTION: RecName: Full=Tectonic-3; Flags: Precursor;
FUNCTION: Part of the tectonic-like complex which is required for tissue-specific ciliogenesis and may regulate ciliary membrane composition (By similarity). May be involved in apoptosis regulation. Necessary for signal transduction through the sonic hedgehog (Shh) signaling pathway.
SUBUNIT: Part of the tectonic-like complex (also named B9 complex) (By similarity).
SUBCELLULAR LOCATION: Membrane; Single-pass type I membrane protein (Potential).
DISEASE: Defects in TCTN3 are the cause of orofaciodigital syndrome 4 (OFD4) [MIM:258860]. A form of orofaciodigital syndrome, a group of heterogeneous disorders characterized by malformations of the oral cavity, face and digits, and associated phenotypic abnormalities that lead to the delineation of various subtypes. OFD4 patients have tongue nodules, multiple frenulae, broad flat nose, hypertelorism, and short rib polydactyly with tibial dysplasia (Majewski syndrome). The presence of severe tibial aplasia differentiates OFD4 from OFD1. Additional features of cystic dysplastic kidneys and brain malformation, including occipital encephalocele, are observed in severely affected patients.
DISEASE: Defects in TCTN3 are the cause of Joubert syndrome 18 (JBTS18) [MIM:614815]. A form of Joubert syndrome, a disorder presenting with cerebellar ataxia, oculomotor apraxia, hypotonia, neonatal breathing abnormalities and psychomotor delay. Neuroradiologically, it is characterized by cerebellar vermian hypoplasia/aplasia, thickened and reoriented superior cerebellar peduncles, and an abnormally large interpeduncular fossa, giving the appearance of a molar tooth on transaxial slices (molar tooth sign). Additional variable features include retinal dystrophy and renal disease. JBTS18 patients have vermis agenesis and the molar tooth sign as well as severe kyphoscoliosis. Other features include intrauterine growth retardation, oral anomalies, micrognathism, polydactyly and camptodactyly, joint laxity, horseshoe kidney, and ventricular septal defect. Note=TCTN3- mutated fibroblasts from JBTS18 patients fail to respond to Shh agonists suggesting that at least some of the defects in affected individuals may be secondary to reduced Shh signaling (PubMed:22883145).
SIMILARITY: Belongs to the tectonic family.
SEQUENCE CAUTION: Sequence=AAH68449.2; Type=Erroneous initiation; Note=Translation N-terminally shortened; Sequence=ABB90564.1; Type=Erroneous initiation; Note=Translation N-terminally shortened; Sequence=BAC11567.1; Type=Frameshift; Positions=238; Sequence=BAC87634.1; Type=Erroneous initiation; Note=Translation N-terminally shortened; Sequence=CAI16768.2; Type=Erroneous initiation; Note=Translation N-terminally shortened;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: TCTN3
Diseases sorted by gene-association score: orofaciodigital syndrome iv* (1369), joubert syndrome 18* (1230), tctn3-related joubert syndrome* (400), orofaciodigital syndrome vi* (143), orofaciodigital syndrome (16), occipital encephalocele (11), horseshoe kidney (11), short-rib thoracic dysplasia 6 with or without polydactyly (9), encephalocele (6), asphyxiating thoracic dystrophy (1), joubert syndrome 1 (1), meckel syndrome 1 (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 23.46 RPKM in Thyroid
Total median expression: 619.43 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -4.6028-0.164 Picture PostScript Text
3' UTR -190.90666-0.287 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011677 - DUF1619

Pfam Domains:
PF07773 - Protein of unknown function (DUF1619)

ModBase Predicted Comparative 3D Structure on Q6NUS6
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Biological Process:
GO:0006915 apoptotic process
GO:0007224 smoothened signaling pathway
GO:0030030 cell projection organization
GO:0043065 positive regulation of apoptotic process
GO:0060271 cilium assembly
GO:0097711 ciliary basal body docking

Cellular Component:
GO:0005634 nucleus
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0060170 ciliary membrane


-  Descriptions from all associated GenBank mRNAs
  AK075357 - Homo sapiens cDNA PSEC0041 fis, clone NT2RP1000921.
AL050022 - Homo sapiens mRNA; cDNA DKFZp564D116 (from clone DKFZp564D116).
AK098295 - Homo sapiens cDNA FLJ40976 fis, clone UTERU2013586.
BC068449 - Homo sapiens tectonic family member 3, mRNA (cDNA clone MGC:87002 IMAGE:5298627), complete cds.
DQ278872 - Homo sapiens TECT3 (TECT3) mRNA, complete cds.
JD412078 - Sequence 393102 from Patent EP1572962.
BC009494 - Homo sapiens tectonic family member 3, mRNA (cDNA clone IMAGE:3940375), partial cds.
JD324396 - Sequence 305420 from Patent EP1572962.
AK299141 - Homo sapiens cDNA FLJ58250 complete cds, highly similar to Tectonic 3 precursor.
JD419703 - Sequence 400727 from Patent EP1572962.
JD465324 - Sequence 446348 from Patent EP1572962.
AY359022 - Homo sapiens clone DNA83560 RTPQ1881 (UNQ1881) mRNA, complete cds.
AK128834 - Homo sapiens cDNA FLJ46329 fis, clone TESTI4044770.
JD313601 - Sequence 294625 from Patent EP1572962.
DQ578386 - Homo sapiens piRNA piR-46498, complete sequence.
JD181416 - Sequence 162440 from Patent EP1572962.
KJ902420 - Synthetic construct Homo sapiens clone ccsbBroadEn_11814 TCTN3 gene, encodes complete protein.
KJ893523 - Synthetic construct Homo sapiens clone ccsbBroadEn_02917 TCTN3 gene, encodes complete protein.
BC061582 - Homo sapiens tectonic family member 3, mRNA (cDNA clone IMAGE:6174336), partial cds.
CU686635 - Synthetic construct Homo sapiens gateway clone IMAGE:100023240 5' read TCTN3 mRNA.
JD409958 - Sequence 390982 from Patent EP1572962.
JD288012 - Sequence 269036 from Patent EP1572962.
JD060181 - Sequence 41205 from Patent EP1572962.
JD086709 - Sequence 67733 from Patent EP1572962.
JD528374 - Sequence 509398 from Patent EP1572962.
JD171324 - Sequence 152348 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q6NUS6 (Reactome details) participates in the following event(s):

R-HSA-5626681 Recruitment of transition zone proteins
R-HSA-5638009 CEP164 recruits RAB3IP-carrying Golgi-derived vesicles to the basal body
R-HSA-5617816 RAB3IP stimulates nucleotide exchange on RAB8A
R-HSA-5620912 Anchoring of the basal body to the plasma membrane
R-HSA-5617833 Cilium Assembly
R-HSA-1852241 Organelle biogenesis and maintenance

-  Other Names for This Gene
  Alternate Gene Symbols: A6NIC8, B0QZ90, B4DR81, C10orf61, ENST00000371217.1, ENST00000371217.2, ENST00000371217.3, ENST00000371217.4, ENST00000371217.5, ENST00000371217.6, ENST00000371217.7, ENST00000371217.8, ENST00000371217.9, NM_015631, PSEC0041, Q6NUS6, Q6P7P3, Q6UW27, Q6ZQQ0, Q8N7K1, Q8NBQ0, Q96GF7, Q9Y3U1, TECT3, TECT3_HUMAN, uc318izl.1, uc318izl.2, UNQ1881/PRO4324
UCSC ID: ENST00000371217.10_10
RefSeq Accession: NM_015631.6
Protein: Q6NUS6 (aka TECT3_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene TCTN3:
joubert (Joubert Syndrome)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.