Human Gene STK4 (ENST00000372806.8_5) from GENCODE V47lift37
  Description: serine/threonine kinase 4, transcript variant 1 (from RefSeq NM_006282.5)
Gencode Transcript: ENST00000372806.8_5
Gencode Gene: ENSG00000101109.14_10
Transcript (Including UTRs)
   Position: hg19 chr20:43,595,153-43,708,662 Size: 113,510 Total Exon Count: 11 Strand: +
Coding Region
   Position: hg19 chr20:43,595,210-43,703,817 Size: 108,608 Coding Exon Count: 11 

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Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr20:43,595,153-43,708,662)mRNA (may differ from genome)Protein (487 aa)
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-  Comments and Description Text from UniProtKB
  ID: STK4_HUMAN
DESCRIPTION: RecName: Full=Serine/threonine-protein kinase 4; EC=2.7.11.1; AltName: Full=Mammalian STE20-like protein kinase 1; Short=MST-1; AltName: Full=STE20-like kinase MST1; AltName: Full=Serine/threonine-protein kinase Krs-2; Contains: RecName: Full=Serine/threonine-protein kinase 4 37kDa subunit; Short=MST1/N; Contains: RecName: Full=Serine/threonine-protein kinase 4 18kDa subunit; Short=MST1/C;
FUNCTION: Stress-activated, pro-apoptotic kinase which, following caspase-cleavage, enters the nucleus and induces chromatin condensation followed by internucleosomal DNA fragmentation. Key component of the Hippo signaling pathway which plays a pivotal role in organ size control and tumor suppression by restricting proliferation and promoting apoptosis. The core of this pathway is composed of a kinase cascade wherein STK3/MST2 and STK4/MST1, in complex with its regulatory protein SAV1, phosphorylates and activates LATS1/2 in complex with its regulatory protein MOB1, which in turn phosphorylates and inactivates YAP1 oncoprotein and WWTR1/TAZ. Phosphorylation of YAP1 by LATS2 inhibits its translocation into the nucleus to regulate cellular genes important for cell proliferation, cell death, and cell migration. STK3/MST2 and STK4/MST1 are required to repress proliferation of mature hepatocytes, to prevent activation of facultative adult liver stem cells (oval cells), and to inhibit tumor formation (By similarity). Phosphorylates 'Ser-14' of histone H2B (H2BS14ph) during apoptosis. Phosphorylates FOXO3 upon oxidative stress, which results in its nuclear translocation and cell death initiation. Phosphorylates MOBKL1A, MOBKL1B and RASSF2. Phosphorylates TNNI3 (cardiac Tn-I) and alters its binding affinity to TNNC1 (cardiac Tn-C) and TNNT2 (cardiac Tn-T). Phosphorylates FOXO1 on 'Ser-212' and regulates its activation and stimulates transcription of PMAIP1 in a FOXO1-dependent manner. Phosphorylates SIRT1 and inhibits SIRT1-mediated p53/TP53 deacetylation, thereby promoting p53/TP53 dependent transcription and apoptosis upon DNA damage. Acts as an inhibitor of PKB/AKT1. Phosphorylates AR on 'Ser-650' and suppresses its activity by intersecting with PKB/AKT1 signaling and antagonizing formation of AR-chromatin complexes.
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
COFACTOR: Magnesium.
ENZYME REGULATION: Inhibited by the C-terminal non-catalytic region. Activated by caspase-cleavage. Full activation also requires homodimerization and autophosphorylation of Thr-183. Activated by RASSF1 which acts by preventing its dephosphorylation.
SUBUNIT: Homodimer; mediated via the coiled-coil region. Interacts with NORE1, which inhibits autoactivation. Interacts with and stabilizes SAV1. Interacts with RASSF1. Interacts with FOXO3. Interacts with RASSF2 (via SARAH domain). Interacts with AR, PKB/AKT1, TNNI3 and SIRT1.
INTERACTION: Self; NbExp=3; IntAct=EBI-367376, EBI-367376; O95166:GABARAP; NbExp=2; IntAct=EBI-367376, EBI-712001; Q9H0R8:GABARAPL1; NbExp=2; IntAct=EBI-367376, EBI-746969; P60520:GABARAPL2; NbExp=2; IntAct=EBI-367376, EBI-720116; Q9GZQ8:MAP1LC3B; NbExp=7; IntAct=EBI-367376, EBI-373144; P35700:Prdx1 (xeno); NbExp=3; IntAct=EBI-367376, EBI-444948; Q9NS23-2:RASSF1; NbExp=4; IntAct=EBI-367376, EBI-438698; P50749:RASSF2; NbExp=4; IntAct=EBI-367376, EBI-960081; Q86WH2:RASSF3; NbExp=2; IntAct=EBI-367376, EBI-2845202; Q9H2L5:RASSF4; NbExp=3; IntAct=EBI-367376, EBI-2933362; Q8WWW0:RASSF5; NbExp=3; IntAct=EBI-367376, EBI-367390; Q8WWW0-2:RASSF5; NbExp=4; IntAct=EBI-367376, EBI-960502; Q8WWW0-3:RASSF5; NbExp=2; IntAct=EBI-367376, EBI-960507; Q6ZTQ3:RASSF6; NbExp=2; IntAct=EBI-367376, EBI-2933412; Q9H4B6:SAV1; NbExp=6; IntAct=EBI-367376, EBI-1017775; Q13188:STK3; NbExp=3; IntAct=EBI-367376, EBI-992580; Q91VJ4:Stk38 (xeno); NbExp=2; IntAct=EBI-367376, EBI-2527046;
SUBCELLULAR LOCATION: Cytoplasm. Nucleus. Note=The caspase-cleaved form cycles between the nucleus and cytoplasm.
TISSUE SPECIFICITY: Expressed in prostate cancer and levels increase from the normal to the malignant state (at protein level). Ubiquitously expressed.
INDUCTION: Activity increases during mitosis.
PTM: Autophosphorylated on serine and threonine residues. Phosphorylation at Thr-120 and Thr-387 by PKB/AKT1, leads to inhibition of its: kinase activity, nuclear translocation and autophosphorylation at Thr-183. It also diminishes its cleavage by caspases and its ability to phosphorylate FOXO3.
PTM: Proteolytically cleaved by caspase-3 during apoptosis at Asp- 326 and Asp-349 resulting in a 37 kDa or a 39 kDa subunit respectively. The 39 kDa subunit is further cleaved into the 37 kDa form. Proteolytic cleavage results in kinase activation and nuclear translocation of the truncated form (MST1/N). It is less likely that cleavage at Asp-349 is a prerequisite for activation as this site is not conserved in the murine ortholog.
SIMILARITY: Belongs to the protein kinase superfamily. STE Ser/Thr protein kinase family. STE20 subfamily.
SIMILARITY: Contains 1 protein kinase domain.
SIMILARITY: Contains 1 SARAH domain.
SEQUENCE CAUTION: Sequence=AAH29511.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence; Sequence=AAH58916.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence;
WEB RESOURCE: Name=Atlas of Genetics and Cytogenetics in Oncology and Haematology; URL="http://atlasgeneticsoncology.org/Genes/STK4ID42440ch20q11.html";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: STK4
Diseases sorted by gene-association score: t-cell immunodeficiency, recurrent infections, autoimmunity, and cardiac malformations* (1350), hyper-ige recurrent infection syndrome (6)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 28.78 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 232.97 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -18.5057-0.325 Picture PostScript Text
3' UTR -1473.704845-0.304 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011009 - Kinase-like_dom
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR011524 - SARAH
IPR024205 - SARAH_domain
IPR002290 - Ser/Thr_dual-sp_kinase_dom

Pfam Domains:
PF00069 - Protein kinase domain
PF03109 - ABC1 atypical kinase-like domain
PF07714 - Protein tyrosine and serine/threonine kinase
PF11629 - C terminal SARAH domain of Mst1
PF17667 - Fungal protein kinase

SCOP Domains:
47986 - DEATH domain
56112 - Protein kinase-like (PK-like)

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2JO8 - NMR MuPIT 3COM - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q13043
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0000287 magnesium ion binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0008134 transcription factor binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0042802 identical protein binding
GO:0042803 protein homodimerization activity
GO:0043539 protein serine/threonine kinase activator activity
GO:0046872 metal ion binding
GO:0046983 protein dimerization activity

Biological Process:
GO:0000902 cell morphogenesis
GO:0001569 branching involved in blood vessel morphogenesis
GO:0001841 neural tube formation
GO:0001934 positive regulation of protein phosphorylation
GO:0003157 endocardium development
GO:0006468 protein phosphorylation
GO:0006915 apoptotic process
GO:0007165 signal transduction
GO:0007346 regulation of mitotic cell cycle
GO:0007417 central nervous system development
GO:0008285 negative regulation of cell proliferation
GO:0016310 phosphorylation
GO:0018105 peptidyl-serine phosphorylation
GO:0023014 signal transduction by protein phosphorylation
GO:0030216 keratinocyte differentiation
GO:0031098 stress-activated protein kinase signaling cascade
GO:0032092 positive regulation of protein binding
GO:0033138 positive regulation of peptidyl-serine phosphorylation
GO:0035329 hippo signaling
GO:0035556 intracellular signal transduction
GO:0043065 positive regulation of apoptotic process
GO:0045600 positive regulation of fat cell differentiation
GO:0046621 negative regulation of organ growth
GO:0046777 protein autophosphorylation
GO:0050821 protein stabilization
GO:0060215 primitive hemopoiesis
GO:0060706 cell differentiation involved in embryonic placenta development
GO:0060800 regulation of cell differentiation involved in embryonic placenta development
GO:0071902 positive regulation of protein serine/threonine kinase activity
GO:0090090 negative regulation of canonical Wnt signaling pathway
GO:0097284 hepatocyte apoptotic process
GO:1902043 positive regulation of extrinsic apoptotic signaling pathway via death domain receptors
GO:1905461 positive regulation of vascular associated smooth muscle cell apoptotic process

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0016604 nuclear body
GO:0032991 macromolecular complex


-  Descriptions from all associated GenBank mRNAs
  AB209315 - Homo sapiens mRNA for serine/threonine kinase 4 variant protein.
BC029511 - Homo sapiens serine/threonine kinase 4, mRNA (cDNA clone IMAGE:5301283), partial cds.
AK225326 - Homo sapiens mRNA for serine/threonine kinase 4 variant, clone: HEP10114.
BC015332 - Homo sapiens serine/threonine kinase 4, mRNA (cDNA clone IMAGE:4400771), partial cds.
BC038850 - Homo sapiens serine/threonine kinase 4, mRNA (cDNA clone IMAGE:5141115), with apparent retained intron.
CR933633 - Homo sapiens mRNA; cDNA DKFZp686A2068 (from clone DKFZp686A2068).
BC093768 - Homo sapiens serine/threonine kinase 4, mRNA (cDNA clone MGC:120803 IMAGE:7939613), complete cds.
AK315238 - Homo sapiens cDNA, FLJ96240, Homo sapiens serine/threonine kinase 4 (STK4), mRNA.
U60207 - Homo sapiens serine/threonine protein kinase Krs-2 mRNA, complete cds.
BC058916 - Homo sapiens serine/threonine kinase 4, mRNA (cDNA clone IMAGE:4390245), partial cds.
U18297 - Human MST1 (MST1) mRNA, complete cds.
AK309169 - Homo sapiens cDNA, FLJ99210.
BC005231 - Homo sapiens serine/threonine kinase 4, mRNA (cDNA clone IMAGE:3950315), complete cds.
BC039023 - Homo sapiens serine/threonine kinase 4, mRNA (cDNA clone IMAGE:6095545), with apparent retained intron.
KJ901769 - Synthetic construct Homo sapiens clone ccsbBroadEn_11163 STK4 gene, encodes complete protein.
Z25430 - H.sapiens protein-serine/threonine kinase gene, complete CDS.
AY227114 - Homo sapiens kinase/transmembrane domain fusion protein (STK4/SLC36AL fusion) mRNA, partial cds.
JD184970 - Sequence 165994 from Patent EP1572962.
JD293773 - Sequence 274797 from Patent EP1572962.
JD499278 - Sequence 480302 from Patent EP1572962.
JD418290 - Sequence 399314 from Patent EP1572962.
JD479181 - Sequence 460205 from Patent EP1572962.
JD280289 - Sequence 261313 from Patent EP1572962.
JD349206 - Sequence 330230 from Patent EP1572962.
BC065215 - Homo sapiens cDNA clone IMAGE:5103522, partial cds.
JD552600 - Sequence 533624 from Patent EP1572962.
DQ587077 - Homo sapiens piRNA piR-54189, complete sequence.
DQ590765 - Homo sapiens piRNA piR-57877, complete sequence.
JD536913 - Sequence 517937 from Patent EP1572962.
JD082011 - Sequence 63035 from Patent EP1572962.
AK027088 - Homo sapiens cDNA: FLJ23435 fis, clone HRC12631.
BC042861 - Homo sapiens serine/threonine kinase 4, mRNA (cDNA clone IMAGE:5269433).
JD523052 - Sequence 504076 from Patent EP1572962.
JD513585 - Sequence 494609 from Patent EP1572962.
JD257493 - Sequence 238517 from Patent EP1572962.
JD219925 - Sequence 200949 from Patent EP1572962.
JD219924 - Sequence 200948 from Patent EP1572962.
JD183062 - Sequence 164086 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q13043 (Reactome details) participates in the following event(s):

R-HSA-2028692 Cleavage of p-STK4 (p-MST1) by caspase 3
R-HSA-2028284 Phosphorylation of STK4 (MST1) and SAV1 by STK4
R-HSA-2028555 Phosphorylation of LATS1 and 2 by p-STK4 (p-MST1)
R-HSA-2028629 Phosphorylation of MOB1A and B by p-STK4 (p-MST1)
R-HSA-2028670 Phosphorylation of MOB1A and B by p-STK4(MST1)/N
R-HSA-2028679 Phosphorylation of LATS1 and 2 by p-STK4(MST1)/N
R-HSA-2028269 Signaling by Hippo
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: B2RCR8, ENST00000372806.1, ENST00000372806.2, ENST00000372806.3, ENST00000372806.4, ENST00000372806.5, ENST00000372806.6, ENST00000372806.7, KRS2, MST1, NM_006282, Q13043, Q15802, Q4G156, Q5H982, Q6PD60, Q9BR32, Q9NTZ4, STK4_HUMAN, uc318kfo.1, uc318kfo.2
UCSC ID: ENST00000372806.8_5
RefSeq Accession: NM_006282.5
Protein: Q13043 (aka STK4_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.