Human Gene STK39 (ENST00000355999.5_7) from GENCODE V47lift37
  Description: serine/threonine kinase 39 (from RefSeq NM_013233.3)
Gencode Transcript: ENST00000355999.5_7
Gencode Gene: ENSG00000198648.12_12
Transcript (Including UTRs)
   Position: hg19 chr2:168,810,532-169,104,105 Size: 293,574 Total Exon Count: 18 Strand: -
Coding Region
   Position: hg19 chr2:168,812,006-169,103,945 Size: 291,940 Coding Exon Count: 18 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:168,810,532-169,104,105)mRNA (may differ from genome)Protein (545 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: STK39_HUMAN
DESCRIPTION: RecName: Full=STE20/SPS1-related proline-alanine-rich protein kinase; Short=Ste-20-related kinase; EC=2.7.11.1; AltName: Full=DCHT; AltName: Full=Serine/threonine-protein kinase 39;
FUNCTION: May act as a mediator of stress-activated signals.
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
SUBUNIT: The phosphorylated form forms a complex with WNK2 (By similarity).
SUBCELLULAR LOCATION: Cytoplasm (Probable). Nucleus (Probable). Note=Nucleus when caspase-cleaved (Probable).
TISSUE SPECIFICITY: Predominantly expressed in brain and pancreas followed by heart, lung, kidney, skeletal muscle, liver, placenta and testis.
DOMAIN: PAPA box (proline-alanine repeats) may target the kinase to a specific subcellular location by facilitating interaction with intracellular proteins such as actin or actin-like proteins.
PTM: Phosphorylated at Ser-309 by PRKCQ.
SIMILARITY: Belongs to the protein kinase superfamily. STE Ser/Thr protein kinase family. STE20 subfamily.
SIMILARITY: Contains 1 protein kinase domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: STK39
Diseases sorted by gene-association score: epilepsy, familial temporal lobe, 4 (8), renal tubular transport disease (5)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 30.22 RPKM in Minor Salivary Gland
Total median expression: 516.31 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -86.00160-0.538 Picture PostScript Text
3' UTR -301.571474-0.205 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011009 - Kinase-like_dom
IPR024678 - Kinase_OSR1/WNK_CCT
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR002290 - Ser/Thr_dual-sp_kinase_dom

Pfam Domains:
PF00069 - Protein kinase domain
PF03109 - ABC1 atypical kinase-like domain
PF07714 - Protein tyrosine and serine/threonine kinase
PF12202 - Oxidative-stress-responsive kinase 1 C-terminal domain

SCOP Domains:
56112 - Protein kinase-like (PK-like)

ModBase Predicted Comparative 3D Structure on Q9UEW8
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
Gene SorterGene Sorter Gene SorterGene Sorter 
 RGDEnsembl WormBase 
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0019901 protein kinase binding

Biological Process:
GO:0000187 activation of MAPK activity
GO:0001933 negative regulation of protein phosphorylation
GO:0006468 protein phosphorylation
GO:0007346 regulation of mitotic cell cycle
GO:0008217 regulation of blood pressure
GO:0016310 phosphorylation
GO:0018105 peptidyl-serine phosphorylation
GO:0018107 peptidyl-threonine phosphorylation
GO:0023014 signal transduction by protein phosphorylation
GO:0023016 signal transduction by trans-phosphorylation
GO:0031098 stress-activated protein kinase signaling cascade
GO:0032147 activation of protein kinase activity
GO:0032414 positive regulation of ion transmembrane transporter activity
GO:0035556 intracellular signal transduction
GO:0036438 maintenance of lens transparency
GO:0042981 regulation of apoptotic process
GO:0043268 positive regulation of potassium ion transport
GO:0046777 protein autophosphorylation
GO:0050727 regulation of inflammatory response
GO:0050801 ion homeostasis
GO:0071476 cellular hypotonic response
GO:0090188 negative regulation of pancreatic juice secretion
GO:1901017 negative regulation of potassium ion transmembrane transporter activity
GO:1901380 negative regulation of potassium ion transmembrane transport
GO:1905408 negative regulation of creatine transmembrane transporter activity
GO:2000650 negative regulation of sodium ion transmembrane transporter activity

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0016020 membrane
GO:0016323 basolateral plasma membrane
GO:0016324 apical plasma membrane
GO:0019898 extrinsic component of membrane
GO:0043231 intracellular membrane-bounded organelle


-  Descriptions from all associated GenBank mRNAs
  BX647113 - Homo sapiens mRNA; cDNA DKFZp686K05124 (from clone DKFZp686K05124).
AF099989 - Homo sapiens Ste-20 related kinase SPAK mRNA, complete cds.
BC146813 - Homo sapiens cDNA clone IMAGE:8860382, containing frame-shift errors.
AY629298 - Homo sapiens small intestine SPAK-like kinase mRNA, complete cds.
AF030403 - Homo sapiens Ste20-like protein kinase mRNA, complete cds.
AF017635 - Homo sapiens DCHT mRNA, complete cds.
BC166614 - Synthetic construct Homo sapiens clone IMAGE:100066340, MGC:195477 serine threonine kinase 39 (STE20/SPS1 homolog, yeast) (STK39) mRNA, encodes complete protein.
KJ535059 - Homo sapiens clone STK39_iso-C_fetal-F14 serine threonine kinase 39 isoform C (STK39) mRNA, complete cds, alternatively spliced.
KJ534948 - Homo sapiens clone STK39_iso-A_adult-A04 serine threonine kinase 39 isoform A (STK39) mRNA, partial cds, alternatively spliced.
KJ534949 - Homo sapiens clone STK39_iso-A_fetal-F01 serine threonine kinase 39 isoform A (STK39) mRNA, partial cds, alternatively spliced.
KJ534950 - Homo sapiens clone STK39_iso-D_fetal-F02 serine threonine kinase 39 isoform D (STK39) mRNA, partial cds, alternatively spliced.
KJ534951 - Homo sapiens clone STK39_iso-B_fetal-F09 serine threonine kinase 39 isoform B (STK39) mRNA, partial cds, alternatively spliced.
KJ534999 - Homo sapiens clone STK39_iso-E_fetal-F03 serine threonine kinase 39 isoform E (STK39) mRNA, complete cds, alternatively spliced.
AK126343 - Homo sapiens cDNA FLJ44371 fis, clone TRACH3009001.
JD297316 - Sequence 278340 from Patent EP1572962.
JD337095 - Sequence 318119 from Patent EP1572962.
JD239745 - Sequence 220769 from Patent EP1572962.
JD129965 - Sequence 110989 from Patent EP1572962.
JD049907 - Sequence 30931 from Patent EP1572962.
JD239202 - Sequence 220226 from Patent EP1572962.
JD553621 - Sequence 534645 from Patent EP1572962.
JD126727 - Sequence 107751 from Patent EP1572962.
JD127135 - Sequence 108159 from Patent EP1572962.
JD190596 - Sequence 171620 from Patent EP1572962.
JD492599 - Sequence 473623 from Patent EP1572962.
JD490316 - Sequence 471340 from Patent EP1572962.
JD255308 - Sequence 236332 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000355999.1, ENST00000355999.2, ENST00000355999.3, ENST00000355999.4, NM_013233, O14774, PASK , Q53S90, Q53SL7, Q53SS1, Q9UER4, Q9UEW8, SPAK , STK39_HUMAN, uc317ziu.1, uc317ziu.2, X5D9C8
UCSC ID: ENST00000355999.5_7
RefSeq Accession: NM_013233.3
Protein: Q9UEW8 (aka STK39_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.