Human Gene STK36 (ENST00000295709.8_4) from GENCODE V47lift37
  Description: serine/threonine kinase 36, transcript variant 1 (from RefSeq NM_015690.5)
Gencode Transcript: ENST00000295709.8_4
Gencode Gene: ENSG00000163482.12_13
Transcript (Including UTRs)
   Position: hg19 chr2:219,536,809-219,567,438 Size: 30,630 Total Exon Count: 27 Strand: +
Coding Region
   Position: hg19 chr2:219,537,553-219,566,732 Size: 29,180 Coding Exon Count: 26 

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Gene AllelesRNA-Seq ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:219,536,809-219,567,438)mRNA (may differ from genome)Protein (1315 aa)
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-  Comments and Description Text from UniProtKB
  ID: STK36_HUMAN
DESCRIPTION: RecName: Full=Serine/threonine-protein kinase 36; EC=2.7.11.1; AltName: Full=Fused homolog;
FUNCTION: Serine/threonine protein kinase which plays an important role in the sonic hedgehog (Shh) pathway by regulating the activity of GLI transcription factors. Controls the activity of the transcriptional regulators GLI1, GLI2 and GLI3 by opposing the effect of SUFU and promoting their nuclear localization. GLI2 requires an additional function of STK36 to become transcriptionally active, but the enzyme does not need to possess an active kinase catalytic site for this to occur. Required for postnatal development, possibly by regulating the homeostasis of cerebral spinal fluid or ciliary function. Essential for construction of the central pair apparatus of motile cilia.
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
COFACTOR: Magnesium.
SUBUNIT: Interacts with SPAG16 and KIF27 (By similarity).
INTERACTION: Q9UMX1:SUFU; NbExp=2; IntAct=EBI-863797, EBI-740595;
SUBCELLULAR LOCATION: Cytoplasm. Nucleus. Note=Low levels also present in the nucleus.
TISSUE SPECIFICITY: Expressed at low levels in most fetal tissues, adult ovaries and at high levels in adult testis, where it is localized in germ cells.
SIMILARITY: Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
SIMILARITY: Contains 1 protein kinase domain.
SEQUENCE CAUTION: Sequence=BAA86592.1; Type=Erroneous initiation; Sequence=BAB14184.1; Type=Frameshift; Positions=987;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: STK36
Diseases sorted by gene-association score: congenital hydrocephalus (16), papillary serous adenocarcinoma (11), hydrocephalus (9), kartagener syndrome (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 41.18 RPKM in Testis
Total median expression: 479.78 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -61.90219-0.283 Picture PostScript Text
3' UTR -214.20706-0.303 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011989 - ARM-like
IPR016024 - ARM-type_fold
IPR011009 - Kinase-like_dom
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR002290 - Ser/Thr_dual-sp_kinase_dom
IPR008271 - Ser/Thr_kinase_AS

Pfam Domains:
PF00069 - Protein kinase domain
PF07714 - Protein tyrosine and serine/threonine kinase
PF13513 - HEAT-like repeat
PF13646 - HEAT repeats

SCOP Domains:
48371 - ARM repeat
48431 - Lipovitellin-phosvitin complex, superhelical domain
56112 - Protein kinase-like (PK-like)

ModBase Predicted Comparative 3D Structure on Q9NRP7
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0008134 transcription factor binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0046872 metal ion binding

Biological Process:
GO:0003351 epithelial cilium movement
GO:0006468 protein phosphorylation
GO:0007228 positive regulation of hh target transcription factor activity
GO:0007275 multicellular organism development
GO:0007420 brain development
GO:0009791 post-embryonic development
GO:0016310 phosphorylation
GO:0030030 cell projection organization
GO:0045880 positive regulation of smoothened signaling pathway
GO:0051090 regulation of sequence-specific DNA binding transcription factor activity
GO:0060271 cilium assembly

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  HM005501 - Homo sapiens clone HTL-T-188 testicular tissue protein Li 188 mRNA, complete cds.
AB033104 - Homo sapiens KIAA1278 mRNA for KIAA1278 protein.
BC026158 - Homo sapiens serine/threonine kinase 36, fused homolog (Drosophila), mRNA (cDNA clone MGC:26231 IMAGE:4839214), complete cds.
AB590296 - Synthetic construct DNA, clone: pFN21AE1427, Homo sapiens STK36 gene for serine/threonine kinase 36, fused homolog, without stop codon, in Flexi system.
DQ891739 - Synthetic construct clone IMAGE:100004369; FLH179565.01X; RZPDo839H11130D serine/threonine kinase 36 (fused homolog, Drosophila) (STK36) gene, encodes complete protein.
DQ894916 - Synthetic construct Homo sapiens clone IMAGE:100009376; FLH179561.01L; RZPDo839H11129D serine/threonine kinase 36 (fused homolog, Drosophila) (STK36) gene, encodes complete protein.
AF200815 - Homo sapiens FUSED serine/threonine kinase mRNA, complete cds.
JD444017 - Sequence 425041 from Patent EP1572962.
JD410635 - Sequence 391659 from Patent EP1572962.
JD175789 - Sequence 156813 from Patent EP1572962.
JD332157 - Sequence 313181 from Patent EP1572962.
AL133630 - Homo sapiens mRNA; cDNA DKFZp434N0223 (from clone DKFZp434N0223).
AK022692 - Homo sapiens cDNA FLJ12630 fis, clone NT2RM4001836.
JD254892 - Sequence 235916 from Patent EP1572962.
JD333656 - Sequence 314680 from Patent EP1572962.
JD399957 - Sequence 380981 from Patent EP1572962.
JD402681 - Sequence 383705 from Patent EP1572962.
JD230161 - Sequence 211185 from Patent EP1572962.
JD190052 - Sequence 171076 from Patent EP1572962.
JD154683 - Sequence 135707 from Patent EP1572962.
JD444273 - Sequence 425297 from Patent EP1572962.
JD228273 - Sequence 209297 from Patent EP1572962.
JD415584 - Sequence 396608 from Patent EP1572962.
JD390779 - Sequence 371803 from Patent EP1572962.
JD166704 - Sequence 147728 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: B7WPM3, ENST00000295709.1, ENST00000295709.2, ENST00000295709.3, ENST00000295709.4, ENST00000295709.5, ENST00000295709.6, ENST00000295709.7, KIAA1278 , NM_015690, Q8TC32, Q9H9N9, Q9NRP7, Q9UF35, Q9ULE2, STK36 , STK36_HUMAN, uc317lni.1, uc317lni.2
UCSC ID: ENST00000295709.8_4
RefSeq Accession: NM_015690.5
Protein: Q9NRP7 (aka STK36_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.