Human Gene STK35 (ENST00000381482.8_4) from GENCODE V47lift37
  Description: serine/threonine kinase 35 (from RefSeq NM_080836.4)
Gencode Transcript: ENST00000381482.8_4
Gencode Gene: ENSG00000125834.13_7
Transcript (Including UTRs)
   Position: hg19 chr20:2,082,473-2,129,201 Size: 46,729 Total Exon Count: 4 Strand: +
Coding Region
   Position: hg19 chr20:2,082,528-2,098,024 Size: 15,497 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr20:2,082,473-2,129,201)mRNA (may differ from genome)Protein (534 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMGIOMIMPubMedUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: STK35_HUMAN
DESCRIPTION: RecName: Full=Serine/threonine-protein kinase 35; EC=2.7.11.1; AltName: Full=CLP-36-interacting kinase 1; Short=CLIK-1; AltName: Full=PDLIM1-interacting kinase 1; AltName: Full=Serine/threonine-protein kinase 35 L1;
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
SUBUNIT: Interacts with PDLIM1/CLP-36.
SUBCELLULAR LOCATION: Nucleus. Nucleus, nucleolus. Cytoplasm. Note=When associated with PDLIM1, it is mostly found in cytoplasm, localized to actin stress fibers (PubMed:11973348). However, PubMed:19756140 detected STK35 only in the nucleus, and the presence of PDLIM1 had no influence on its location.
TISSUE SPECIFICITY: Expressed in testis.
PTM: Autophosphorylated.
MISCELLANEOUS: Association with PDLIM1 is controversial (PubMed:11973348).
SIMILARITY: Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
SIMILARITY: Contains 1 protein kinase domain.
SEQUENCE CAUTION: Sequence=AAI40884.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=AAI40885.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=BAG37270.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=CAI15590.1; Type=Erroneous gene model prediction;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 22.51 RPKM in Testis
Total median expression: 332.64 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -17.9055-0.325 Picture PostScript Text
3' UTR -1737.794809-0.361 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011009 - Kinase-like_dom
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR008271 - Ser/Thr_kinase_AS

Pfam Domains:
PF00069 - Protein kinase domain
PF07714 - Protein tyrosine and serine/threonine kinase

SCOP Domains:
56112 - Protein kinase-like (PK-like)

ModBase Predicted Comparative 3D Structure on Q8TDR2
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity

Biological Process:
GO:0006468 protein phosphorylation
GO:0016310 phosphorylation

Cellular Component:
GO:0005634 nucleus
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0016604 nuclear body


-  Descriptions from all associated GenBank mRNAs
  GQ281297 - Homo sapiens serine threonine kinase 35 long form (STK35L1) mRNA, complete cds.
AK314728 - Homo sapiens cDNA, FLJ95588, Homo sapiens serine/threonine kinase 35 (STK35), mRNA.
BC140883 - Homo sapiens serine/threonine kinase 35, mRNA (cDNA clone MGC:176560 IMAGE:9021751), complete cds.
BC140884 - Homo sapiens serine/threonine kinase 35, mRNA (cDNA clone MGC:176561 IMAGE:9021752), complete cds.
AB527968 - Synthetic construct DNA, clone: pF1KE0690, Homo sapiens STK35 gene for serine/threonine kinase 35, without stop codon, in Flexi system.
KJ903816 - Synthetic construct Homo sapiens clone ccsbBroadEn_13210 STK35 gene, encodes complete protein.
AF195026 - Homo sapiens serine/threonine kinase CLIK1 (CLIK1) mRNA, complete cds.
BC111573 - Homo sapiens serine/threonine kinase 35, mRNA (cDNA clone IMAGE:40031844), partial cds.
BC017340 - Homo sapiens serine/threonine kinase 35, mRNA (cDNA clone IMAGE:4869353), partial cds.
AK302629 - Homo sapiens cDNA FLJ50299 complete cds, highly similar to Serine/threonine-protein kinase 35 (EC 2.7.11.1).
LF205894 - JP 2014500723-A/13397: Polycomb-Associated Non-Coding RNAs.
LF383503 - JP 2014500723-A/191006: Polycomb-Associated Non-Coding RNAs.
MA619080 - JP 2018138019-A/191006: Polycomb-Associated Non-Coding RNAs.
MA441471 - JP 2018138019-A/13397: Polycomb-Associated Non-Coding RNAs.
AK024394 - Homo sapiens cDNA FLJ14332 fis, clone PLACE4000344.
DQ595105 - Homo sapiens piRNA piR-61217, complete sequence.
DQ584866 - Homo sapiens piRNA piR-51978, complete sequence.
DQ597452 - Homo sapiens piRNA piR-35518, complete sequence.
DQ583504 - Homo sapiens piRNA piR-50616, complete sequence.
DQ582341 - Homo sapiens piRNA piR-32453, complete sequence.
DQ594679 - Homo sapiens piRNA piR-60791, complete sequence.
DQ577351 - Homo sapiens piRNA piR-45463, complete sequence.
AK026555 - Homo sapiens cDNA: FLJ22902 fis, clone KAT05581.
DQ586839 - Homo sapiens piRNA piR-53951, complete sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: B2RBM3, C7ENV8, CLIK1, ENST00000381482.1, ENST00000381482.2, ENST00000381482.3, ENST00000381482.4, ENST00000381482.5, ENST00000381482.6, ENST00000381482.7, NM_080836, PDIK1, Q2NKW6, Q5T3R1, Q5T3R2, Q8TDR2, Q96AB4, Q9BZ06, STK35L1, STK35_HUMAN, uc318qhb.1, uc318qhb.2
UCSC ID: ENST00000381482.8_4
RefSeq Accession: NM_080836.4
Protein: Q8TDR2 (aka STK35_HUMAN or ST35_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.