Human Gene SPRY1 (ENST00000651917.1_3) from GENCODE V47lift37
  Description: sprouty RTK signaling antagonist 1, transcript variant 5 (from RefSeq NM_001375410.1)
Gencode Transcript: ENST00000651917.1_3
Gencode Gene: ENSG00000164056.11_10
Transcript (Including UTRs)
   Position: hg19 chr4:124,317,950-124,324,910 Size: 6,961 Total Exon Count: 3 Strand: +
Coding Region
   Position: hg19 chr4:124,322,747-124,323,706 Size: 960 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr4:124,317,950-124,324,910)mRNA (may differ from genome)Protein (319 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: SPY1_HUMAN
DESCRIPTION: RecName: Full=Protein sprouty homolog 1; Short=Spry-1;
FUNCTION: May function as an antagonist of fibroblast growth factor (FGF) pathways and may negatively modulate respiratory organogenesis.
SUBCELLULAR LOCATION: Cytoplasm. Membrane; Peripheral membrane protein. Note=Found in the cytoplasm in unstimulated cells but is translocated to the membrane ruffles in cells stimulated with EGF (epidermal growth factor).
INDUCTION: By FGF signaling.
DOMAIN: The Cys-rich domain is responsible for the localization of the protein to the membrane ruffles.
SIMILARITY: Belongs to the sprouty family.
SIMILARITY: Contains 1 SPR (sprouty) domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: SPRY1
Diseases sorted by gene-association score: adrenal cortical adenocarcinoma (11), legius syndrome (8)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
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+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -156.00439-0.355 Picture PostScript Text
3' UTR -282.001204-0.234 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR007875 - Sprouty

Pfam Domains:
PF05210 - Sprouty protein (Spry)

ModBase Predicted Comparative 3D Structure on O43609
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding

Biological Process:
GO:0000132 establishment of mitotic spindle orientation
GO:0001656 metanephros development
GO:0001657 ureteric bud development
GO:0001759 organ induction
GO:0007275 multicellular organism development
GO:0008285 negative regulation of cell proliferation
GO:0009966 regulation of signal transduction
GO:0034260 negative regulation of GTPase activity
GO:0040037 negative regulation of fibroblast growth factor receptor signaling pathway
GO:0042059 negative regulation of epidermal growth factor receptor signaling pathway
GO:0043407 negative regulation of MAP kinase activity
GO:0046580 negative regulation of Ras protein signal transduction
GO:0051387 negative regulation of neurotrophin TRK receptor signaling pathway
GO:0060449 bud elongation involved in lung branching
GO:0060940 epithelial to mesenchymal transition involved in cardiac fibroblast development
GO:0070373 negative regulation of ERK1 and ERK2 cascade

Cellular Component:
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005794 Golgi apparatus
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0016020 membrane


-  Descriptions from all associated GenBank mRNAs
  HQ447467 - Synthetic construct Homo sapiens clone IMAGE:100070796; CCSB014273_01 sprouty homolog 1, antagonist of FGF signaling (Drosophila) (SPRY1) gene, encodes complete protein.
KJ892978 - Synthetic construct Homo sapiens clone ccsbBroadEn_02372 SPRY1 gene, encodes complete protein.
AY192146 - Homo sapiens sprouty 1 protein mRNA, complete cds; alternatively spliced.
AK026960 - Homo sapiens cDNA: FLJ23307 fis, clone HEP11549, highly similar to AF041037 Homo sapiens novel antagonist of FGF signaling (sprouty-1) mRNA.
BC063856 - Homo sapiens sprouty homolog 1, antagonist of FGF signaling (Drosophila), mRNA (cDNA clone MGC:75188 IMAGE:6181674), complete cds.
JD433988 - Sequence 415012 from Patent EP1572962.
JD268443 - Sequence 249467 from Patent EP1572962.
CU687836 - Synthetic construct Homo sapiens gateway clone IMAGE:100022783 5' read SPRY1 mRNA.
AY590694 - Homo sapiens clone IMAGE:6028920 sprouty 1 mRNA, partial cds.
AF041037 - Homo sapiens novel antagonist of FGF signaling (sprouty-1) mRNA, partial cds.
JD528812 - Sequence 509836 from Patent EP1572962.
JD070758 - Sequence 51782 from Patent EP1572962.
JD260849 - Sequence 241873 from Patent EP1572962.
JD219397 - Sequence 200421 from Patent EP1572962.
JD312821 - Sequence 293845 from Patent EP1572962.
JD418624 - Sequence 399648 from Patent EP1572962.
JD290195 - Sequence 271219 from Patent EP1572962.
JD403098 - Sequence 384122 from Patent EP1572962.
JD378463 - Sequence 359487 from Patent EP1572962.
JD258150 - Sequence 239174 from Patent EP1572962.
JD148493 - Sequence 129517 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_spryPathway - Sprouty regulation of tyrosine kinase signals

Reactome (by CSHL, EBI, and GO)

Protein O43609 (Reactome details) participates in the following event(s):

R-HSA-183089 CBL binds and ubiquitinates phosphorylated Sprouty
R-HSA-182990 Sprouty sequesters CBL away from active EGFR
R-HSA-183051 CBL ubiquitinates Sprouty
R-HSA-182971 EGFR downregulation
R-HSA-177929 Signaling by EGFR
R-HSA-9006934 Signaling by Receptor Tyrosine Kinases
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: D3DNX6, NM_001375410, O43609, Q6PNE0, SPY1_HUMAN, uc328tpl.1, uc328tpl.2
UCSC ID: ENST00000651917.1_3
RefSeq Accession: NM_001258038.2
Protein: O43609 (aka SPY1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.