Human Gene SPAG17 (ENST00000336338.10_10) from GENCODE V47lift37
  Description: sperm associated antigen 17 (from RefSeq NM_206996.4)
Gencode Transcript: ENST00000336338.10_10
Gencode Gene: ENSG00000155761.14_14
Transcript (Including UTRs)
   Position: hg19 chr1:118,496,213-118,727,851 Size: 231,639 Total Exon Count: 49 Strand: -
Coding Region
   Position: hg19 chr1:118,506,422-118,727,780 Size: 221,359 Coding Exon Count: 48 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:118,496,213-118,727,851)mRNA (may differ from genome)Protein (2223 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MalacardsMGIOMIMPubMedUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: SPG17_HUMAN
DESCRIPTION: RecName: Full=Sperm-associated antigen 17; AltName: Full=Projection protein PF6 homolog;
FUNCTION: Seems to be important for the structural integrity of the central apparatus of the sperm axoneme (By similarity).
SUBUNIT: Interacts (via the C-terminus) with SPAG6; the interaction probably occurs on polymerized microtubules (By similarity).
SUBCELLULAR LOCATION: Cytoplasm (By similarity). Cytoplasm, cytoskeleton, flagellum axoneme (By similarity). Note=Detected in the cytoplasm of round spermatids and in condensing spermatids. Localized to the central pair of the sperm flagellar axoneme. Colocalizes with SPAG6 on microtubules (By similarity).
TISSUE SPECIFICITY: Highly expressed in testis. Expressed in organs that contain cilia-bearing cells including brain, oviduct, lung, and uterus.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: SPAG17
Diseases sorted by gene-association score: primary ciliary dyskinesia (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
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-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 11.97 RPKM in Testis
Total median expression: 24.18 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -24.3071-0.342 Picture PostScript Text
3' UTR -102.80460-0.223 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR026173 - SPAG17

Pfam Domains:
PF14874 - Flagellar-associated PapD-like

ModBase Predicted Comparative 3D Structure on Q6Q759
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Biological Process:
GO:0003351 epithelial cilium movement
GO:0030030 cell projection organization
GO:1904158 axonemal central apparatus assembly

Cellular Component:
GO:0005737 cytoplasm
GO:0005856 cytoskeleton
GO:0005874 microtubule
GO:0005929 cilium
GO:0031514 motile cilium
GO:0042995 cell projection
GO:1990716 axonemal central apparatus


-  Descriptions from all associated GenBank mRNAs
  AY555274 - Homo sapiens PF6 mRNA, complete cds.
AL833485 - Homo sapiens mRNA; cDNA DKFZp686H1229 (from clone DKFZp686H1229).
BX648110 - Homo sapiens mRNA; cDNA DKFZp686G2032 (from clone DKFZp686G2032).
BC148427 - Synthetic construct Homo sapiens clone IMAGE:100015375, MGC:183010 sperm associated antigen 17 (SPAG17) mRNA, encodes complete protein.
AB527095 - Synthetic construct DNA, clone: pF1KB7345, Homo sapiens SPAG17 gene for sperm associated antigen 17, without stop codon, in Flexi system.
HM370394 - Homo sapiens sperm associated antigen 17 (SPAG17) mRNA, partial cds, alternatively spliced.
AK091816 - Homo sapiens cDNA FLJ34497 fis, clone HLUNG2005133.
AX747199 - Sequence 724 from Patent EP1308459.
JD224244 - Sequence 205268 from Patent EP1572962.
BC043251 - Homo sapiens sperm associated antigen 17, mRNA (cDNA clone IMAGE:5296393), containing frame-shift errors.
AK126319 - Homo sapiens cDNA FLJ44343 fis, clone TRACH3005479, highly similar to Homo sapiens sperm associated antigen 17 (SPAG17), mRNA.
AL137581 - Homo sapiens mRNA; cDNA DKFZp434B0610 (from clone DKFZp434B0610); partial cds.
JD040386 - Sequence 21410 from Patent EP1572962.
JD363000 - Sequence 344024 from Patent EP1572962.
AK126327 - Homo sapiens cDNA FLJ44353 fis, clone TRACH3006470.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000336338.1, ENST00000336338.2, ENST00000336338.3, ENST00000336338.4, ENST00000336338.5, ENST00000336338.6, ENST00000336338.7, ENST00000336338.8, ENST00000336338.9, NM_206996, Q6Q759, Q8NAZ1, Q9NT21, SPG17_HUMAN, uc317umr.1, uc317umr.2
UCSC ID: ENST00000336338.10_10
RefSeq Accession: NM_206996.4
Protein: Q6Q759 (aka SPG17_HUMAN)

-  Gene Model Information
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-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.