Human Gene SOCS5 (ENST00000394861.3_4) from GENCODE V47lift37
  Description: suppressor of cytokine signaling 5, transcript variant 2 (from RefSeq NM_144949.3)
Gencode Transcript: ENST00000394861.3_4
Gencode Gene: ENSG00000171150.9_8
Transcript (Including UTRs)
   Position: hg19 chr2:46,926,434-46,990,268 Size: 63,835 Total Exon Count: 2 Strand: +
Coding Region
   Position: hg19 chr2:46,985,670-46,987,280 Size: 1,611 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:46,926,434-46,990,268)mRNA (may differ from genome)Protein (536 aa)
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-  Comments and Description Text from UniProtKB
  ID: SOCS5_HUMAN
DESCRIPTION: RecName: Full=Suppressor of cytokine signaling 5; Short=SOCS-5; AltName: Full=Cytokine-inducible SH2 protein 6; Short=CIS-6; AltName: Full=Cytokine-inducible SH2-containing protein 5;
FUNCTION: SOCS family proteins form part of a classical negative feedback system that regulates cytokine signal transduction. May be a substrate-recognition component of a SCF-like ECS (Elongin BC-CUL2/5-SOCS-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Inhibits for instance EGF signaling by mediating the degradation of the EGF receptor/EGFR. Involved in the regulation of T-helper cell differentiation by inhibiting of the IL4 signaling pathway which promotes differentiation into the Th2 phenotype. Can also partially inhibit IL6 and LIF signaling.
PATHWAY: Protein modification; protein ubiquitination.
SUBUNIT: Interacts with IL4R; inhibits IL4 signaling (By similarity). Interacts with EGFR. Interacts with TCEB1 AND TCEB2; mediates EGFR ubiquitination and degradation.
INDUCTION: Up-regulated by EGF (at protein level).
DOMAIN: The SOCS box domain mediates the interaction with the Elongin BC complex, an adapter module in different E3 ubiquitin ligase complexes.
PTM: Phosphorylated. Phosphorylation is induced by EGF.
SIMILARITY: Contains 1 SH2 domain.
SIMILARITY: Contains 1 SOCS box domain.
SEQUENCE CAUTION: Sequence=BAA31646.2; Type=Erroneous initiation;

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 16.82 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 317.22 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -80.50167-0.482 Picture PostScript Text
3' UTR -667.802988-0.223 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000980 - SH2
IPR022252 - SOCS
IPR001496 - SOCS_C

Pfam Domains:
PF00017 - SH2 domain
PF07525 - SOCS box
PF12610 - Suppressor of cytokine signalling

SCOP Domains:
158235 - SOCS box-like
55550 - SH2 domain

ModBase Predicted Comparative 3D Structure on O75159
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004860 protein kinase inhibitor activity
GO:0005154 epidermal growth factor receptor binding
GO:0005515 protein binding
GO:0030971 receptor tyrosine kinase binding

Biological Process:
GO:0007173 epidermal growth factor receptor signaling pathway
GO:0007175 negative regulation of epidermal growth factor-activated receptor activity
GO:0007259 JAK-STAT cascade
GO:0009968 negative regulation of signal transduction
GO:0016049 cell growth
GO:0016567 protein ubiquitination
GO:0019221 cytokine-mediated signaling pathway
GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0032715 negative regulation of interleukin-6 production
GO:0035556 intracellular signal transduction
GO:0040008 regulation of growth
GO:0043687 post-translational protein modification
GO:0045627 positive regulation of T-helper 1 cell differentiation
GO:0045629 negative regulation of T-helper 2 cell differentiation
GO:0046426 negative regulation of JAK-STAT cascade
GO:0050728 negative regulation of inflammatory response
GO:0071404 cellular response to low-density lipoprotein particle stimulus
GO:0071638 negative regulation of monocyte chemotactic protein-1 production
GO:0097699 vascular endothelial cell response to fluid shear stress

Cellular Component:
GO:0005737 cytoplasm
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  AK290194 - Homo sapiens cDNA FLJ75616 complete cds, highly similar to Homo sapiens suppressor of cytokine signaling 5 (SOCS5), transcript variant 1, mRNA.
AK296796 - Homo sapiens cDNA FLJ51885 complete cds, highly similar to Suppressor of cytokine signaling 5.
AB014571 - Homo sapiens KIAA0671 mRNA for KIAA0671 protein.
AL136896 - Homo sapiens mRNA; cDNA DKFZp434C198 (from clone DKFZp434C198).
BC032862 - Homo sapiens suppressor of cytokine signaling 5, mRNA (cDNA clone MGC:33746 IMAGE:5264754), complete cds.
AF073958 - Homo sapiens cytokine-inducible SH2 protein 6 (CISH6) mRNA, complete cds.
JD310493 - Sequence 291517 from Patent EP1572962.
JD396540 - Sequence 377564 from Patent EP1572962.
JD126146 - Sequence 107170 from Patent EP1572962.
JD512259 - Sequence 493283 from Patent EP1572962.
CU689568 - Synthetic construct Homo sapiens gateway clone IMAGE:100019811 5' read SOCS5 mRNA.
AB385369 - Synthetic construct DNA, clone: pF1KA0671, Homo sapiens SOCS5 gene for suppressor of cytokine signaling 5, complete cds, without stop codon, in Flexi system.
DQ894396 - Synthetic construct Homo sapiens clone IMAGE:100008856; FLH170204.01L; RZPDo839C1197D suppressor of cytokine signaling 5 (SOCS5) gene, encodes complete protein.
DQ891213 - Synthetic construct clone IMAGE:100003843; FLH170208.01X; RZPDo839C1198D suppressor of cytokine signaling 5 (SOCS5) gene, encodes complete protein.
KJ898065 - Synthetic construct Homo sapiens clone ccsbBroadEn_07459 SOCS5 gene, encodes complete protein.
JD023535 - Sequence 4559 from Patent EP1572962.
JD030655 - Sequence 11679 from Patent EP1572962.
JD091064 - Sequence 72088 from Patent EP1572962.
JD503030 - Sequence 484054 from Patent EP1572962.
JD047094 - Sequence 28118 from Patent EP1572962.
JD209038 - Sequence 190062 from Patent EP1572962.
JD086726 - Sequence 67750 from Patent EP1572962.
JD562550 - Sequence 543574 from Patent EP1572962.
JD101138 - Sequence 82162 from Patent EP1572962.
JD091038 - Sequence 72062 from Patent EP1572962.
JD562663 - Sequence 543687 from Patent EP1572962.
JD301907 - Sequence 282931 from Patent EP1572962.
JD237691 - Sequence 218715 from Patent EP1572962.
JD048721 - Sequence 29745 from Patent EP1572962.
JD354170 - Sequence 335194 from Patent EP1572962.
JD562624 - Sequence 543648 from Patent EP1572962.
JD244006 - Sequence 225030 from Patent EP1572962.
JD056548 - Sequence 37572 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein O75159 (Reactome details) participates in the following event(s):

R-HSA-6785821 SOCS5,(SOCS1) bind IL4RA
R-HSA-8952039 NEDD8:AcM-UBE2F binds CRL5 E3 ubiquitin ligase complex
R-HSA-8955241 CAND1 binds cytosolic CRL E3 ubiquitin ligases
R-HSA-8952044 AcM-UBE2F transfers NEDD8 to CRL5 E3 ubiquitin ligase complex
R-HSA-8955289 COMMDs displace CAND1 from cytosolic CRL E3 ubiquitin ligase complexes
R-HSA-8956040 COP9 signalosome deneddylates cytosolic CRL E3 ubiquitin ligase complexes
R-HSA-6785807 Interleukin-4 and 13 signaling
R-HSA-449147 Signaling by Interleukins
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-8951664 Neddylation
R-HSA-168256 Immune System
R-HSA-597592 Post-translational protein modification
R-HSA-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: CIS6, CISH5, CISH6, ENST00000394861.1, ENST00000394861.2, KIAA0671, NM_144949, O75159, Q53SD4, Q8IYZ4, SOCS5_HUMAN, uc318wyx.1, uc318wyx.2
UCSC ID: ENST00000394861.3_4
RefSeq Accession: NM_144949.3
Protein: O75159 (aka SOCS5_HUMAN or SOC5_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.