Human Gene SNORD86 (ENST00000391196.1) from GENCODE V47lift37

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Description: small nucleolar RNA, C/D box 86 (from RefSeq NR_004399.1)
Gencode Transcript: ENST00000391196.1
Gencode Gene: ENSG00000212498.1
Transcript (Including UTRs)
Position: hg19 chr20:2,636,743-2,636,828 Size: 86 Total Exon Count: 1 Strand: +

Page Index	Sequence and Links	Primers	RNA-Seq Expression	Other Species	mRNA Descriptions
Other Names	Model Information	Methods

Data last updated at UCSC: 2024-08-22 23:36:26

Sequence and Links to Tools and Databases

Genomic Sequence (chr20:2,636,743-2,636,828)			mRNA (may differ from genome)		No protein
Gene Sorter	Genome Browser	Other Species FASTA	Gene interactions	Table Schema	BioGPS
Ensembl	Entrez Gene	ExonPrimer	HGNC	PubMed	BioGrid CRISPR DB

Primer design for this transcript

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3

RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)


	Highest median expression: 2.21 RPKM in Cells - EBV-transformed lymphocytes Total median expression: 47.72 RPKM View in GTEx track of Genome Browser View at GTEx portal View GTEx Body Map

Orthologous Genes in Other Species

Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.

Mouse	Rat	Zebrafish	D. melanogaster	C. elegans	S. cerevisiae
No ortholog	No ortholog	No ortholog	No ortholog	No ortholog	No ortholog

Descriptions from all associated GenBank mRNAs


	AK097186 - Homo sapiens cDNA FLJ39867 fis, clone SPLEN2015310, highly similar to NUCLEOLAR PROTEIN NOP56. BX641071 - Homo sapiens mRNA; cDNA DKFZp686H24193 (from clone DKFZp686H24193). MH499886 - Homo sapiens NOP56 ribonucleoprotein transcript variant 2 lncRNA (NOP56), complete sequence. BC004937 - Homo sapiens NOP56 ribonucleoprotein homolog (yeast), mRNA (cDNA clone IMAGE:3608097), complete cds.

Other Names for This Gene


	Alternate Gene Symbols: NR_004399, uc318uim.1 UCSC ID: ENST00000391196.1 RefSeq Accession: NR_004399.1

Gene Model Information


	Click here for a detailed description of the fields of the table above.

Methods, Credits, and Use Restrictions


	Click here for details on how this gene model was made and data restrictions if any.