Human Gene SNORA56 (ENST00000383966.1) from GENCODE V47lift37

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Description: small nucleolar RNA, H/ACA box 56 (from RefSeq NR_002984.1)
Gencode Transcript: ENST00000383966.1
Gencode Gene: ENSG00000206693.1
Transcript (Including UTRs)
Position: hg19 chrX:154,003,273-154,003,401 Size: 129 Total Exon Count: 1 Strand: +

Page Index	Sequence and Links	Primers	CTD	RNA-Seq Expression	Other Species
mRNA Descriptions	Other Names	Model Information	Methods

Data last updated at UCSC: 2024-08-22 23:36:26

Sequence and Links to Tools and Databases

Genomic Sequence (chrX:154,003,273-154,003,401)			mRNA (may differ from genome)		No protein
Gene Sorter	Genome Browser	Other Species FASTA	Gene interactions	Table Schema	BioGPS
Ensembl	Entrez Gene	ExonPrimer	HGNC	PubMed	BioGrid CRISPR DB

Primer design for this transcript

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3

Comparative Toxicogenomics Database (CTD)


	The following chemicals interact with this gene D000393 Air Pollutants

RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)


	Highest median expression: 1.66 RPKM in Testis Total median expression: 35.10 RPKM View in GTEx track of Genome Browser View at GTEx portal View GTEx Body Map

Orthologous Genes in Other Species

Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.

Mouse	Rat	Zebrafish	D. melanogaster	C. elegans	S. cerevisiae
No ortholog	No ortholog	No ortholog	No ortholog	No ortholog	No ortholog

Descriptions from all associated GenBank mRNAs


	LF211549 - JP 2014500723-A/19052: Polycomb-Associated Non-Coding RNAs. LF385329 - JP 2014500723-A/192832: Polycomb-Associated Non-Coding RNAs. JF279874 - Homo sapiens dyskeratosis congenita 1 isoform 3 (DKC1) mRNA, complete cds, alternatively spliced. AJ609449 - Homo sapiens ACA56 snoRNA gene. LF380962 - JP 2014500723-A/188465: Polycomb-Associated Non-Coding RNAs. MA620906 - JP 2018138019-A/192832: Polycomb-Associated Non-Coding RNAs. MA447126 - JP 2018138019-A/19052: Polycomb-Associated Non-Coding RNAs. MA616539 - JP 2018138019-A/188465: Polycomb-Associated Non-Coding RNAs.

Other Names for This Gene


	Alternate Gene Symbols: NR_002984, uc318rkl.1 UCSC ID: ENST00000383966.1 RefSeq Accession: NR_002984.1

Gene Model Information


	Click here for a detailed description of the fields of the table above.

Methods, Credits, and Use Restrictions


	Click here for details on how this gene model was made and data restrictions if any.