Human Gene SHB (ENST00000377707.4_7) from GENCODE V47lift37
  Description: SH2 domain containing adaptor protein B (from RefSeq NM_003028.3)
Gencode Transcript: ENST00000377707.4_7
Gencode Gene: ENSG00000107338.10_10
Transcript (Including UTRs)
   Position: hg19 chr9:37,915,895-38,069,224 Size: 153,330 Total Exon Count: 6 Strand: -
Coding Region
   Position: hg19 chr9:37,919,818-38,068,642 Size: 148,825 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr9:37,915,895-38,069,224)mRNA (may differ from genome)Protein (509 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: SHB_HUMAN
DESCRIPTION: RecName: Full=SH2 domain-containing adapter protein B;
FUNCTION: Adapter protein which regulates several signal transduction cascades by linking activated receptors to downstream signaling components. May play a role in angiogenesis by regulating FGFR1, VEGFR2 and PDGFR signaling. May also play a role in T-cell antigen receptor/TCR signaling, interleukin-2 signaling, apoptosis and neuronal cells differentiation by mediating basic- FGF and NGF-induced signaling cascades. May also regulate IRS1 and IRS2 signaling in insulin-producing cells.
SUBUNIT: Interacts with PTPN11 (By similarity). Interacts with phosphorylated 'Tyr-720' of the ligand-activated receptor PDGFRA via its SH2 domain. Interacts with the ligand-activated receptors PDGFRB, FGFR1, KDR/VEGFR2, IL2RB and IL2RG. Interacts with EPS8 and V-SRC. Interacts with GRB2 and GRAP. Interacts with CD3Z. Interacts with tyrosine-phosphorylated LAT upon T-cell antigen receptor activation. Interacts with PLCG1. Interacts with ZAP70, LCP2/SLP-76, VAV1 and GRAP2. Interacts with JAK1 and JAK3. Interacts with PTK2/FAK1. Interacts with CRK/CrKII. Interacts with IRS2.
SUBCELLULAR LOCATION: Cytoplasm. Cell membrane; Peripheral membrane protein; Cytoplasmic side. Note=Associates with membrane lipid rafts upon TCR stimulation.
TISSUE SPECIFICITY: Widely expressed.
DOMAIN: The SH2 domain preferentially binds phosphopeptides with the consensus sequence Y-[TVI]-X-L and mediates interaction with PDGFRA, PDGFRB, FGRFR1, IL2RB, IL2RG, CD3Z and CRK/CrKII.
PTM: Phosphorylated upon PDGFRA, PDGFRB, TCR, IL2 receptor, FGFR1 or VEGFR2 activation.
SIMILARITY: Contains 1 SH2 domain.
SEQUENCE CAUTION: Sequence=AAH94765.1; Type=Erroneous initiation; Sequence=CAA53091.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: SHB
Diseases sorted by gene-association score: sulfhemoglobinemia (13)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 16.39 RPKM in Liver
Total median expression: 385.69 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -342.90582-0.589 Picture PostScript Text
3' UTR -1515.403923-0.386 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000980 - SH2

Pfam Domains:
PF00017 - SH2 domain

SCOP Domains:
55550 - SH2 domain

ModBase Predicted Comparative 3D Structure on Q15464
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0001784 phosphotyrosine binding
GO:0005070 SH3/SH2 adaptor activity
GO:0005515 protein binding

Biological Process:
GO:0001525 angiogenesis
GO:0006915 apoptotic process
GO:0007165 signal transduction
GO:0007275 multicellular organism development
GO:0009967 positive regulation of signal transduction
GO:0030154 cell differentiation
GO:0048010 vascular endothelial growth factor receptor signaling pathway

Cellular Component:
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0036464 cytoplasmic ribonucleoprotein granule


-  Descriptions from all associated GenBank mRNAs
  BC094765 - Homo sapiens Src homology 2 domain containing adaptor protein B, mRNA (cDNA clone IMAGE:30520166), partial cds.
X75342 - H.sapiens SHB mRNA.
BC136581 - Homo sapiens Src homology 2 domain containing adaptor protein B, mRNA (cDNA clone MGC:168194 IMAGE:9020571), complete cds.
BC136582 - Homo sapiens Src homology 2 domain containing adaptor protein B, mRNA (cDNA clone MGC:168195 IMAGE:9020572), complete cds.
AK055947 - Homo sapiens cDNA FLJ31385 fis, clone NT2NE1000004.
JD040900 - Sequence 21924 from Patent EP1572962.
JD467630 - Sequence 448654 from Patent EP1572962.
JD321877 - Sequence 302901 from Patent EP1572962.
JD394275 - Sequence 375299 from Patent EP1572962.
JD391378 - Sequence 372402 from Patent EP1572962.
JD340326 - Sequence 321350 from Patent EP1572962.
JD099511 - Sequence 80535 from Patent EP1572962.
JD455946 - Sequence 436970 from Patent EP1572962.
JD517060 - Sequence 498084 from Patent EP1572962.
JD372052 - Sequence 353076 from Patent EP1572962.
JD187723 - Sequence 168747 from Patent EP1572962.
JD084696 - Sequence 65720 from Patent EP1572962.
JD062454 - Sequence 43478 from Patent EP1572962.
JD554557 - Sequence 535581 from Patent EP1572962.
JD191524 - Sequence 172548 from Patent EP1572962.
JD387907 - Sequence 368931 from Patent EP1572962.
JD513012 - Sequence 494036 from Patent EP1572962.
JD392126 - Sequence 373150 from Patent EP1572962.
JD531300 - Sequence 512324 from Patent EP1572962.
JD119234 - Sequence 100258 from Patent EP1572962.
JD037708 - Sequence 18732 from Patent EP1572962.
JD193846 - Sequence 174870 from Patent EP1572962.
JD306788 - Sequence 287812 from Patent EP1572962.
JD525591 - Sequence 506615 from Patent EP1572962.
JD306860 - Sequence 287884 from Patent EP1572962.
JD429087 - Sequence 410111 from Patent EP1572962.
JD190210 - Sequence 171234 from Patent EP1572962.
JD065781 - Sequence 46805 from Patent EP1572962.
JD342904 - Sequence 323928 from Patent EP1572962.
JD147680 - Sequence 128704 from Patent EP1572962.
JD524864 - Sequence 505888 from Patent EP1572962.
JD393309 - Sequence 374333 from Patent EP1572962.
JD214693 - Sequence 195717 from Patent EP1572962.
JD498125 - Sequence 479149 from Patent EP1572962.
JD170323 - Sequence 151347 from Patent EP1572962.
JD519301 - Sequence 500325 from Patent EP1572962.
JD261048 - Sequence 242072 from Patent EP1572962.
JD385098 - Sequence 366122 from Patent EP1572962.
JD320071 - Sequence 301095 from Patent EP1572962.
JD403661 - Sequence 384685 from Patent EP1572962.
AK096227 - Homo sapiens cDNA FLJ38908 fis, clone NT2NE2005358.
JD507064 - Sequence 488088 from Patent EP1572962.
JD145766 - Sequence 126790 from Patent EP1572962.
JD059031 - Sequence 40055 from Patent EP1572962.
JD089222 - Sequence 70246 from Patent EP1572962.
JD226328 - Sequence 207352 from Patent EP1572962.
JD124395 - Sequence 105419 from Patent EP1572962.
JD192730 - Sequence 173754 from Patent EP1572962.
JD542105 - Sequence 523129 from Patent EP1572962.
JD382274 - Sequence 363298 from Patent EP1572962.
JD396861 - Sequence 377885 from Patent EP1572962.
BC029953 - Homo sapiens Src homology 2 domain containing adaptor protein B, mRNA (cDNA clone IMAGE:5169391).
JD173197 - Sequence 154221 from Patent EP1572962.
JD464955 - Sequence 445979 from Patent EP1572962.
JD188570 - Sequence 169594 from Patent EP1572962.
JD206862 - Sequence 187886 from Patent EP1572962.
JD458707 - Sequence 439731 from Patent EP1572962.
JD474760 - Sequence 455784 from Patent EP1572962.
JD057269 - Sequence 38293 from Patent EP1572962.
JD464907 - Sequence 445931 from Patent EP1572962.
JD253065 - Sequence 234089 from Patent EP1572962.
JD140504 - Sequence 121528 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q15464 (Reactome details) participates in the following event(s):

R-HSA-4420099 p-6Y-VEGFR2 binds SHB
R-HSA-4420128 SRC-1 phosphorylates SHB
R-HSA-4420083 PTK2 binds p-S-SHB and is recruited to p-6Y-VEGFR2
R-HSA-5218642 PTK2 autophosphorylates
R-HSA-5218645 SRC-1 binds p-Y397-PTK2
R-HSA-5218643 HSP90AA1 binds p-6Y-VEGFR2
R-HSA-5218640 SRC-1 phosphorylates p-Y397-PTK2
R-HSA-5218838 PXN binds p-6Y,S732-PTK2
R-HSA-5218855 BCAR1 binds p-7Y-PTK2
R-HSA-5218851 p-Y402-PTK2B phosphorylates p-5Y,S732-PTK2 on Y407
R-HSA-5218826 Active ROCK1,ROCK2 phosphorylates p-5Y-PTK2 on S732
R-HSA-5218820 Src kinases phosphorylate VAV
R-HSA-5218830 SRC-1 phosphorylates PTK2-beta
R-HSA-5218809 PTK2 and SRC-1 phosphorylate PXN on Y31 and Y118
R-HSA-5218828 PTK2/SRC-1 phosphorylates BCAR1
R-HSA-5218822 CRK binds BCAR1 and or PXN
R-HSA-5218811 DOCK180:ELMO binds CRK
R-HSA-5218839 DOCK180:ELMO exchanges GTP for GDP, activating RAC1
R-HSA-4420097 VEGFA-VEGFR2 Pathway
R-HSA-194138 Signaling by VEGF
R-HSA-9006934 Signaling by Receptor Tyrosine Kinases
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: B9EGM0, D3DRQ5, ENST00000377707.1, ENST00000377707.2, ENST00000377707.3, NM_003028, Q15464, Q504U5, Q5VUM8, SHB_HUMAN, uc318nuh.1, uc318nuh.2
UCSC ID: ENST00000377707.4_7
RefSeq Accession: NM_003028.3
Protein: Q15464 (aka SHB_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.